Lag0008324 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008324
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 2-like
Locationchr9: 17647150 .. 17648997 (+)
RNA-Seq ExpressionLag0008324
SyntenyLag0008324
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGGCCCAAATTGTAGTGGCTTTGGATGGAATGATAGAGACAAGTGCAAAGAAGCAGAAAAACATATATTTGATGAATGGGTGAAGGTAAGTAAAAAGAATTTTTTTTATTTAATAGTTTATGATATAAATATCAAAGTGCATTAAAATGGATTTATATTTGTTTTTACAAAGTCATCCAACTGCAAAGGGACTCAAAAACAAGCCTTTTCCATTCTTTGAACAATTAGTCATTGTTTTTGGGAAAGATAGGGCCAATGGACTTGGTGCAGAAGGTCCAACTGTTTTTTTGGAAGCAGTGGAACAAGAAATGACCGACAATGAATTTTGGAGAGGAGACAGCTTTTATGTGCCTACTCCACCAATAGTTGGGGGGGATGGATTGAGTGTTCGACAAAGAGTTCGAGCTGGTAAGCTTATCACCAAAGATCAATCCTAGATTGATTACTTCTTTAATCTTCCAGCTGATGAAAGGTATGAATTTATAATGGAAGTTTTAGAAGAGAATACTGATCTTTAGTCTGTGTGAGTGTTGACACTTCAATGTAATAGGAGATTATATAACATGTTATGTATGGACATTTAGATTTTTTGGGCCCTTATCGGATGATGTATATATCATCTTTATTTTGAGTTAACATGTCATTGACATGCTATGGATGAACATTTATATTTTTTGTGCCCTATCGGATGATGTAATATTTTTATTTTGGGTTAGCATGTTATTGACATGCTATGGACGAACATTTATATTTTTTGTTCCCTATCTAATGATTAAATATCCTCATTTTGAATTAGCTTGCCACTATATCTTGTATTTGTATGGTCCATTATGAAGATAAATGTTCATTTTGTGTATGTTTAAGAGTCACTTTGATATTGATTATCCATTATTTTTTAAATATAATATTTATCATTAATATTCAATTTGATTGTTGAGCTAATTAAGTAGGATTAACCGTTTACACAATTTTATTAAATACATTTCTTTGAAGATAATTAATAATATTCATTGCTAAATAAAATCAACCGCCTAAAATTTAAGGTATATTATTTCTAATATTTCCTAATGAGTGACATTTTAATTGCTTAAAATAATTTTAATAATATGAGTTAATAAAAATAAATTAACTAACAACAATTAATTTATTTAAAATTAATTGATATAATTTTTTTTTGAAACACACTAACGTAAATTAATTGTTGGAAGTTAATTTTGATTAATTTTAATGTTTTATCATTGCATTAAATTGTTGAAAGTAATTGCATGAATCAAGTAAAAATATCATTTATTTATACGCGAATGTGACAACAATCCTATGCAACACCAAACACATACATCATTTATTCTTAGGAAATGTGATGACATTCCCTGGCACAACCAAACACAGTTATCTTTGATTCCCAGGCATATTATTCCCAGACATCTTTTATTCCCAGGCATCTGTAAAACCTTAAACCAAACAGGCCCTAAGAAGTTTAAGATTCTTGCTAAGATGGCTAAGGATATTTTGGCAATTCCACTTTCTACTGTAGCTTCAGAATCAGCTTTCTCTACTGGAGGTAGAGTACTTGATCCATCTCATAGTACTCTATCTCCAACTACAGTTGAAACACTCATCTGTTTGCAAAATTGGATTCGCTCATCACCTATTAGTAACATTGAGGAGATTATCGAAGGTGCTCCCGATGAAATAGCGAAGATCGTAGAAGGTAATAAATTCCTATTATTCTAATTTTCTCATTTTTTTTATTGACTTATATTGTGTTGTACTATATTATTATTCACTTTCATTTGTAGAATCTCAATCGACGAGTAGTGGAATTACCACAATTGATGAATGA

mRNA sequence

ATGTTAGGCCCAAATTGTAGTGGCTTTGGATGGAATGATAGAGACAAGTGCAAAGAAGCAGAAAAACATATATTTGATGAATGGGTGAAGGGACTCAAAAACAAGCCTTTTCCATTCTTTGAACAATTAGTCATTGTTTTTGGGAAAGATAGGGCCAATGGACTTGGTGCAGAAGGTCCAACTGTTTTTTTGGAAGCAGTGGAACAAGAAATGACCGACAATGAATTTTGGAGAGGAGACAGCTTTTATGTGCCTACTCCACCAATAGTTGGGGGGGATGGATTGAGTGTTCGACAAAGAGTTCGAGCTGGCATCTGTAAAACCTTAAACCAAACAGGCCCTAAGAAGTTTAAGATTCTTGCTAAGATGGCTAAGGATATTTTGGCAATTCCACTTTCTACTGTAGCTTCAGAATCAGCTTTCTCTACTGGAGGTAGAGTACTTGATCCATCTCATAGTACTCTATCTCCAACTACAGTTGAAACACTCATCTGTTTGCAAAATTGGATTCGCTCATCACCTATTAGTAACATTGAGGAGATTATCGAAGGTGCTCCCGATGAAATAGCGAAGATCGTAGAAGAATCTCAATCGACGAGTAGTGGAATTACCACAATTGATGAATGA

Coding sequence (CDS)

ATGTTAGGCCCAAATTGTAGTGGCTTTGGATGGAATGATAGAGACAAGTGCAAAGAAGCAGAAAAACATATATTTGATGAATGGGTGAAGGGACTCAAAAACAAGCCTTTTCCATTCTTTGAACAATTAGTCATTGTTTTTGGGAAAGATAGGGCCAATGGACTTGGTGCAGAAGGTCCAACTGTTTTTTTGGAAGCAGTGGAACAAGAAATGACCGACAATGAATTTTGGAGAGGAGACAGCTTTTATGTGCCTACTCCACCAATAGTTGGGGGGGATGGATTGAGTGTTCGACAAAGAGTTCGAGCTGGCATCTGTAAAACCTTAAACCAAACAGGCCCTAAGAAGTTTAAGATTCTTGCTAAGATGGCTAAGGATATTTTGGCAATTCCACTTTCTACTGTAGCTTCAGAATCAGCTTTCTCTACTGGAGGTAGAGTACTTGATCCATCTCATAGTACTCTATCTCCAACTACAGTTGAAACACTCATCTGTTTGCAAAATTGGATTCGCTCATCACCTATTAGTAACATTGAGGAGATTATCGAAGGTGCTCCCGATGAAATAGCGAAGATCGTAGAAGAATCTCAATCGACGAGTAGTGGAATTACCACAATTGATGAATGA

Protein sequence

MLGPNCSGFGWNDRDKCKEAEKHIFDEWVKGLKNKPFPFFEQLVIVFGKDRANGLGAEGPTVFLEAVEQEMTDNEFWRGDSFYVPTPPIVGGDGLSVRQRVRAGICKTLNQTGPKKFKILAKMAKDILAIPLSTVASESAFSTGGRVLDPSHSTLSPTTVETLICLQNWIRSSPISNIEEIIEGAPDEIAKIVEESQSTSSGITTIDE
Homology
BLAST of Lag0008324 vs. NCBI nr
Match: XP_038886815.1 (uncharacterized protein LOC120077046 [Benincasa hispida])

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-18
Identity = 50/97 (51.55%), Postives = 63/97 (64.95%), Query Frame = 0

Query: 1   MLGPNCSGFGWNDRDKCKEAEKHIFDEWV------KGLKNKPFPFFEQLVIVFGKDRANG 60
           MLGPN SGFGWN+R KC    K +FD+WV      KGL+NK FP+ +++ ++FGKDRANG
Sbjct: 37  MLGPNFSGFGWNERQKCFHCSKDVFDDWVKSHPSAKGLRNKSFPYLDEMAMIFGKDRANG 96

Query: 61  LGAEGPTVFLEAVEQEMTDNEFWRGDSF---YVPTPP 89
           L AEGP    E ++ E T+N  W  D F   YV  PP
Sbjct: 97  LRAEGPDDMAEKIDME-TNNGMW--DDFSDCYVSHPP 130

BLAST of Lag0008324 vs. NCBI nr
Match: XP_026662506.2 (uncharacterized protein LOC113463064 [Phoenix dactylifera])

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-18
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 1   MLGPNCSGFGWNDRDKCKEAEKHIFDEWVK------GLKNKPFPFFEQLVIVFGKDRANG 60
           MLGPNC  FGWNDRDKC  A+K ++D W+K      GL+NKPFP++E L IVFGKDRANG
Sbjct: 296 MLGPNCLEFGWNDRDKCVVADKDVYDLWMKSHPHAAGLRNKPFPYYEDLSIVFGKDRANG 355

Query: 61  LGAEGPTVFLEAVEQE 71
            GAE P    E +E+E
Sbjct: 356 EGAENPVDACEQIEKE 371

BLAST of Lag0008324 vs. NCBI nr
Match: XP_024029924.1 (uncharacterized protein LOC21412682 [Morus notabilis] >XP_024029925.1 uncharacterized protein LOC21412682 [Morus notabilis] >XP_024029927.1 uncharacterized protein LOC21412682 [Morus notabilis] >XP_024029928.1 uncharacterized protein LOC21412682 [Morus notabilis])

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-17
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 0

Query: 1  MLGPNCSGFGWNDRDKCKEAEKHIFDEWV------KGLKNKPFPFFEQLVIVFGKDRANG 60
          MLGP  SGFGWND+DKC   EK +FDEWV      KGL+NKPFP++++L +VFGKDRANG
Sbjct: 1  MLGPAGSGFGWNDKDKCVVVEKDVFDEWVKSHPSAKGLRNKPFPYYDELGLVFGKDRANG 60

Query: 61 LGAEGPTVFLEAVEQEMTDNE 76
           GA G T  ++ +++E T+N+
Sbjct: 61 QGAMGLTDMVDDIDKE-TEND 80

BLAST of Lag0008324 vs. NCBI nr
Match: XP_038978687.1 (uncharacterized protein LOC103695460 [Phoenix dactylifera])

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-17
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 1   MLGPNCSGFGWNDRDKCKEAEKHIFDEWVK------GLKNKPFPFFEQLVIVFGKDRANG 60
           MLGPNCS FGWNDR+KC   +K ++D WVK      GL+NKPFP++E L IVFGKDRANG
Sbjct: 289 MLGPNCSRFGWNDREKCVVVDKDVYDLWVKSHPHVAGLRNKPFPYYEDLSIVFGKDRANG 348

Query: 61  LGAEGPTVFLEAVEQE 71
            GAE      E +E+E
Sbjct: 349 EGAEDRADACEQIEKE 364

BLAST of Lag0008324 vs. NCBI nr
Match: XP_008777637.2 (uncharacterized protein LOC103697538 [Phoenix dactylifera])

HSP 1 Score: 98.2 bits (243), Expect = 8.8e-17
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 1   MLGPNCSGFGWNDRDKCKEAEKHIFDEWVK------GLKNKPFPFFEQLVIVFGKDRANG 60
           MLGPN   FGWNDR+KC  A+K ++D WVK      GL+NKPFP++E L IVFGKDR NG
Sbjct: 298 MLGPNYLEFGWNDREKCVVADKDVYDLWVKSHPHAAGLRNKPFPYYEDLSIVFGKDRPNG 357

Query: 61  LGAEGPTVFLEAVEQE 71
            GAE PT   E +E+E
Sbjct: 358 EGAEDPTDACEQIEKE 373

BLAST of Lag0008324 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 8.3e-10
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 116 KFKILAKMAKDILAIPLSTVASESAFSTGGRVLDPSHSTLSPTTVETLICLQNWIRSS 174
           ++ IL ++A+D+LAI +STVASESAFS GGRV+DP  + L    VE LIC ++W+ +S
Sbjct: 697 EYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWVAAS 754

BLAST of Lag0008324 vs. ExPASy Swiss-Prot
Match: P03010 (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.3e-10
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 116 KFKILAKMAKDILAIPLSTVASESAFSTGGRVLDPSHSTLSPTTVETLICLQNWIRSS 174
           ++ IL ++A+D+LAI +STVASESAFS GGRV+DP  + L    VE LIC ++W+ +S
Sbjct: 666 EYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWVAAS 723

BLAST of Lag0008324 vs. ExPASy Swiss-Prot
Match: Q75HY5 (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-07
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 116 KFKILAKMAKDILAIPLSTVASE----SAFSTGGRVLDPSHSTLSPTTVETLICLQNWIR 175
           KF  L+KMA+D+LAIP+S V+S     SA +TG ++LD   S+L P TVE L C ++W++
Sbjct: 675 KFPTLSKMARDVLAIPMSMVSSGSSIFSATATGSQMLDDYRSSLRPETVEALFCAKDWLQ 734

BLAST of Lag0008324 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 116 KFKILAKMAKDILAIPLSTVAS-ESAFS--TGGRVLDPSHSTLSPTTVETLICLQNWIRS 175
           KF  L++MA+DILAIP+S V+S  S FS  TG R+LD   S+L P  VE L+C ++W++ 
Sbjct: 645 KFPTLSRMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKDWLQY 704

BLAST of Lag0008324 vs. ExPASy Swiss-Prot
Match: Q0JMB2 (Zinc finger BED domain-containing protein RICESLEEPER 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0518400 PE=2 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 3.3e-06
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 111 QTGPKKFKILAKMAKDILAIPLSTVASESAF---STGGRVLDPSHSTLSPTTVETLICLQ 170
           Q    K+  L++MA+D+LAIP+STV   S+      G R LD   S+L P  VE L+C +
Sbjct: 618 QDNTLKYPTLSRMARDVLAIPMSTVGVGSSVFLPDNGSRSLDDYRSSLRPELVEALLCAK 677

Query: 171 NWIRSSP 175
           +W++ SP
Sbjct: 678 DWLQYSP 684

BLAST of Lag0008324 vs. ExPASy TrEMBL
Match: A0A5C7HLQ5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015538 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-17
Identity = 49/102 (48.04%), Postives = 63/102 (61.76%), Query Frame = 0

Query: 1   MLGPNCSGFGWNDRDKCKEAEKHIFDEWV------KGLKNKPFPFFEQLVIVFGKDRANG 60
           MLGP+ SGFGWND  KC   EK +FDEWV      KGL+NKPFP++E+L  VFGKDRANG
Sbjct: 34  MLGPSASGFGWNDDIKCVVVEKIVFDEWVKSHPTAKGLRNKPFPYYEELRTVFGKDRANG 93

Query: 61  LGAEGPTVFLEAVEQEMTDNEFWRGDSFYVPTPPIVGGDGLS 97
            G  G   F E VE+   +++    D  + P+  + G   +S
Sbjct: 94  QGVMG---FSETVEEIGNEDDQHNDDDPFYPSDELNGNVNMS 132

BLAST of Lag0008324 vs. ExPASy TrEMBL
Match: A0A6P5FXE5 (uncharacterized protein LOC109718933 isoform X1 OS=Ananas comosus OX=4615 GN=LOC109718933 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-16
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 1   MLGPNCSGFGWNDRDKCKEAEKHIFDEWVK------GLKNKPFPFFEQLVIVFGKDRANG 60
           MLGP+ SGFGW+D++KC E +K+++D WVK      GL+ K FP+FE+L IVFGKDRA G
Sbjct: 115 MLGPSASGFGWSDKNKCVECDKNVYDNWVKSHPNAVGLRGKSFPYFEELSIVFGKDRATG 174

Query: 61  LGAEGPTVFLEAVEQEMTD 74
           + AE P   +  +E E T+
Sbjct: 175 IAAESPADAVANIEGEETN 193

BLAST of Lag0008324 vs. ExPASy TrEMBL
Match: A0A6P5ESP3 (uncharacterized protein LOC109708977 isoform X2 OS=Ananas comosus OX=4615 GN=LOC109708977 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-16
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 1   MLGPNCSGFGWNDRDKCKEAEKHIFDEWVK------GLKNKPFPFFEQLVIVFGKDRANG 60
           MLGP+ SGFGW+D++KC E +K+++D WVK      GL+ K FP+FE+L IVFGKDRA G
Sbjct: 92  MLGPSASGFGWSDKNKCVECDKNVYDNWVKSHPNAVGLRGKSFPYFEELSIVFGKDRATG 151

Query: 61  LGAEGPTVFLEAVEQEMTD 74
           + AE P   +  +E E T+
Sbjct: 152 IAAESPADAVANIEGEETN 170

BLAST of Lag0008324 vs. ExPASy TrEMBL
Match: A0A6P5G5H8 (uncharacterized protein LOC109718933 isoform X2 OS=Ananas comosus OX=4615 GN=LOC109718933 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-16
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 1   MLGPNCSGFGWNDRDKCKEAEKHIFDEWVK------GLKNKPFPFFEQLVIVFGKDRANG 60
           MLGP+ SGFGW+D++KC E +K+++D WVK      GL+ K FP+FE+L IVFGKDRA G
Sbjct: 93  MLGPSASGFGWSDKNKCVECDKNVYDNWVKSHPNAVGLRGKSFPYFEELSIVFGKDRATG 152

Query: 61  LGAEGPTVFLEAVEQEMTD 74
           + AE P   +  +E E T+
Sbjct: 153 IAAESPADAVANIEGEETN 171

BLAST of Lag0008324 vs. ExPASy TrEMBL
Match: A0A6P5EZC9 (uncharacterized protein LOC109708977 isoform X1 OS=Ananas comosus OX=4615 GN=LOC109708977 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-16
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 1   MLGPNCSGFGWNDRDKCKEAEKHIFDEWVK------GLKNKPFPFFEQLVIVFGKDRANG 60
           MLGP+ SGFGW+D++KC E +K+++D WVK      GL+ K FP+FE+L IVFGKDRA G
Sbjct: 114 MLGPSASGFGWSDKNKCVECDKNVYDNWVKSHPNAVGLRGKSFPYFEELSIVFGKDRATG 173

Query: 61  LGAEGPTVFLEAVEQEMTD 74
           + AE P   +  +E E T+
Sbjct: 174 IAAESPADAVANIEGEETN 192

BLAST of Lag0008324 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 51.6 bits (122), Expect = 8.8e-07
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 116 KFKILAKMAKDILAIPLSTVASESAFSTGGRVLDPSHSTLSPTTVETLICLQNWIRSSPI 175
           K+  L+KMA+DIL+IP+S  A +  F    R +D   ++L P TVE LIC + W+  S  
Sbjct: 620 KYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWLLESNA 679

Query: 176 SN 178
           S+
Sbjct: 680 SS 681

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038886815.11.2e-1851.55uncharacterized protein LOC120077046 [Benincasa hispida][more]
XP_026662506.22.7e-1860.53uncharacterized protein LOC113463064 [Phoenix dactylifera][more]
XP_024029924.11.0e-1756.79uncharacterized protein LOC21412682 [Morus notabilis] >XP_024029925.1 uncharacte... [more]
XP_038978687.13.0e-1759.21uncharacterized protein LOC103695460 [Phoenix dactylifera][more]
XP_008777637.28.8e-1759.21uncharacterized protein LOC103697538 [Phoenix dactylifera][more]
Match NameE-valueIdentityDescription
P087708.3e-1053.45Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2[more]
P030108.3e-1053.45Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1[more]
Q75HY52.3e-0747.62Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. j... [more]
Q6AVI01.1e-0650.00Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j... [more]
Q0JMB23.3e-0641.79Zinc finger BED domain-containing protein RICESLEEPER 4 OS=Oryza sativa subsp. j... [more]
Match NameE-valueIdentityDescription
A0A5C7HLQ54.3e-1748.04Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015538 PE=4 SV=1[more]
A0A6P5FXE54.7e-1651.90uncharacterized protein LOC109718933 isoform X1 OS=Ananas comosus OX=4615 GN=LOC... [more]
A0A6P5ESP34.7e-1651.90uncharacterized protein LOC109708977 isoform X2 OS=Ananas comosus OX=4615 GN=LOC... [more]
A0A6P5G5H84.7e-1651.90uncharacterized protein LOC109718933 isoform X2 OS=Ananas comosus OX=4615 GN=LOC... [more]
A0A6P5EZC94.7e-1651.90uncharacterized protein LOC109708977 isoform X1 OS=Ananas comosus OX=4615 GN=LOC... [more]
Match NameE-valueIdentityDescription
AT3G42170.18.8e-0741.94BED zinc finger ;hAT family dimerisation domain [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 115..170
e-value: 6.9E-18
score: 64.2
NoneNo IPR availablePANTHERPTHR23272BED FINGER-RELATEDcoord: 107..177
NoneNo IPR availablePANTHERPTHR23272:SF145ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKEcoord: 107..177
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 115..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008324.1Lag0008324.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity