Lag0008233 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008233
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr9: 15364834 .. 15365322 (+)
RNA-Seq ExpressionLag0008233
SyntenyLag0008233
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCTCGCCCTTCACATCTTGCCTCAGGCAGTGGTCAACCCCTGATTCAGGCGGAATTCAGGATGGTCTCTCGCCCTTCAAATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCTCTCGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCAGAATTCAGGATGGTCTCTCGCCTTTCTCATCTTGCCTCAGGCAGTGATCAACCCTTGATTCAGGCGGAATTCAGGATGGTCTCTTGTCCTTTTCATCTTGTCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCTCTCGCCCTTCACATCTTGCCTCAGGAAGTGATCAATCCCTGATTCAGACGGAATTCAGGATGGTCTCTCGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGAAATTCAGGATGGTCACTCTATATTCTGTGATTTAA

mRNA sequence

ATGGTCTCTCGCCCTTCACATCTTGCCTCAGGCAGTGGTCAACCCCTGATTCAGGCGGAATTCAGGATGGTCTCTCGCCCTTCAAATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCTCTCGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCAGAATTCAGGATGGTCTCTCGCCTTTCTCATCTTGCCTCAGGCAGTGATCAACCCTTGATTCAGGCGGAATTCAGGATGGTCTCTTGTCCTTTTCATCTTGTCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCTCTCGCCCTTCACATCTTGCCTCAGGAAGTGATCAATCCCTGATTCAGACGGAATTCAGGATGGTCTCTCGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGAAATTCAGGATGGTCACTCTATATTCTGTGATTTAA

Coding sequence (CDS)

ATGGTCTCTCGCCCTTCACATCTTGCCTCAGGCAGTGGTCAACCCCTGATTCAGGCGGAATTCAGGATGGTCTCTCGCCCTTCAAATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCTCTCGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCAGAATTCAGGATGGTCTCTCGCCTTTCTCATCTTGCCTCAGGCAGTGATCAACCCTTGATTCAGGCGGAATTCAGGATGGTCTCTTGTCCTTTTCATCTTGTCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCTCTCGCCCTTCACATCTTGCCTCAGGAAGTGATCAATCCCTGATTCAGACGGAATTCAGGATGGTCTCTCGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGAAATTCAGGATGGTCACTCTATATTCTGTGATTTAA

Protein sequence

MVSRPSHLASGSGQPLIQAEFRMVSRPSNLASGSDQPLIQAEFRMVSRPSHLASGSDQPLIQAEFRMVSRLSHLASGSDQPLIQAEFRMVSCPFHLVSGSDQPLIQAEFRMVSRPSHLASGSDQSLIQTEFRMVSRPSHLASGSDQPLIQAKFRMVTLYSVI
Homology
BLAST of Lag0008233 vs. NCBI nr
Match: CAE1322405.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-11
Identity = 53/145 (36.55%), Postives = 57/145 (39.31%), Query Frame = 0

Query: 5   PSHLASGSGQPLIQAEFRMVSRPSNLASGSDQPLIQAEFRMVSRPSHLASGSDQPLIQAE 64
           P+HL S S  P I         PS+L S S  P I         P+HL S S  P I   
Sbjct: 47  PTHLLSSSVSPAILFRLTCYRLPSHLLSSSVSPAILFRLTCYPLPTHLLSLSVSPAILFR 106

Query: 65  FRMVSRLSHLASGSDQPLIQAEFRMVSCPFHLVSGSDQPLIQAEFRMVSRPSHLASGSDQ 124
                  SHL S SD P I         P HL+S SD P I         PSHL S S  
Sbjct: 107 LTCYPLPSHLPSSSDSPAILFRLTCYPLPTHLLSSSDSPAIFFRLTCYPLPSHLLSSSVS 166

Query: 125 SLIQTEFRMVSRPSHLASGSDQPLI 150
             I         PSHL S SD P I
Sbjct: 167 PAILFRLTCYLLPSHLLSYSDSPAI 191

BLAST of Lag0008233 vs. NCBI nr
Match: MBO4653699.1 (zinc-ribbon domain-containing protein [Lachnospiraceae bacterium])

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-08
Identity = 38/147 (25.85%), Postives = 77/147 (52.38%), Query Frame = 0

Query: 5   PSHLASGSGQPLIQAEFRMVSRPSNLASGSDQPLIQAEFRMVSRPSHLASGSDQPLIQAE 64
           P  +A+   QP+ QA   + + P  +A+  +QP+ QA   + + P  +A+  +QP+ QA 
Sbjct: 52  PEQVAAAVEQPVEQAVAAVEAAPEQVAAAVEQPVEQAVAAVEAAPEQVAAAVEQPVEQAV 111

Query: 65  FRMVSRLSHLASGSDQPLIQAEFRMVSCPFHLVSGSDQPLIQAEFRMVSRPSHLASGSDQ 124
             + +    +A+  +QP+ QA   + + P  + +  +QP+ QA   + + P  +A+  +Q
Sbjct: 112 AAVEAAPEQVAAAVEQPVEQAVAAVEAAPEQVAAAVEQPVEQAVAAVEAAPEQVAAAVEQ 171

Query: 125 SLIQTEFRMVSRPSHLASGSDQPLIQA 152
            + Q    + + P  +A+  +QP+ QA
Sbjct: 172 PVYQAAAAVEAAPEQVAAAVEQPVYQA 198

BLAST of Lag0008233 vs. NCBI nr
Match: CAE1298543.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-07
Identity = 49/149 (32.89%), Postives = 52/149 (34.90%), Query Frame = 0

Query: 5   PSHLASGSGQPLIQAEFRMVSRPSNLASGSDQPLIQAEFRMVSRPSHLASGSDQPLIQAE 64
           P HL S S  P I   F     P  L S S  P I         P+HL S S  P+I   
Sbjct: 444 PPHLLSSSTSPAILFRFTCYPLPPQLLSSSASPAILFRLTCYPLPTHLLSSSASPVILFH 503

Query: 65  FRMVSRLSHLASGSDQPLIQAEFRMVSCPFHLVSGSDQPLIQAEFRMVSRPSHLASGSDQ 124
           F       HL S S    I       S P HL+S S  P I   F     P HL S S  
Sbjct: 504 FTCHPLPPHLLSSSTSYAILFHLTCNSLPPHLLSSSTSPAILFHFTCHPLPPHLLSPSAS 563

Query: 125 SLIQTEFRMVSRPSHLASGSDQPLIQAKF 154
             I           HL S S  P I   F
Sbjct: 564 PAILFRLTCYPLTLHLLSSSTSPAILFHF 592

BLAST of Lag0008233 vs. NCBI nr
Match: MBN8962059.1 (negative regulator of septation ring formation [Hyphomicrobiales bacterium])

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-06
Identity = 39/157 (24.84%), Postives = 75/157 (47.77%), Query Frame = 0

Query: 6   SHLASGSGQPLIQAEFRMVSRPSNLASGSDQPLIQAEFRMVSRPSHLASGSDQPLIQAEF 65
           S L+ G+ + +   E ++ +  S+L  G+ Q +   + ++    +    G++Q L + + 
Sbjct: 626 SSLSGGTKKVVDTIEAKLTNLTSSLTDGAAQTIGAIDTKLSQLTASFTDGANQTLGEIDT 685

Query: 66  RMVSRLSHLASGSDQPLIQAEFRMVSCPFHLVSGSDQPLIQAEFRMVSRPSHLASGSDQS 125
           RM    S L  G++Q L Q + RM+     L +G+ Q L + + R+    S L  G+ Q+
Sbjct: 686 RMTRLTSSLTEGANQTLGQIDDRMMQLTSSLTAGATQTLDEIDTRLTRLTSTLTEGATQT 745

Query: 126 LIQTEFRMVSRPSHLASGSDQPLIQAKFRMVTLYSVI 163
           L + + +M    S L  G+ Q +     R+  L S +
Sbjct: 746 LGEIDTKMTRLTSSLNEGATQAIYSIDSRLAQLSSTL 782

BLAST of Lag0008233 vs. NCBI nr
Match: CAE1178059.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-06
Identity = 46/145 (31.72%), Postives = 51/145 (35.17%), Query Frame = 0

Query: 5   PSHLASGSGQPLIQAEFRMVSRPSNLASGSDQPLIQAEFRMVSRPSHLASGSDQPLIQAE 64
           P HL   S  P I          ++L S S   +I         P+HL S S    I   
Sbjct: 35  PPHLLFCSASPAILFRLTCYLLLTHLLSSSVSSVILFRLTCSPLPTHLLSSSSSSAILFR 94

Query: 65  FRMVSRLSHLASGSDQPLIQAEFRMVSCPFHLVSGSDQPLIQAEFRMVSRPSHLASGSDQ 124
               S   HL S S  P I         PFHL+S SD P I         P HL S    
Sbjct: 95  LTCYSVPPHLLSSSASPAILFFLTCYPLPFHLLSSSDSPAILFLLTCYPLPPHLLSSFAS 154

Query: 125 SLIQTEFRMVSRPSHLASGSDQPLI 150
             I         PSHL S SD P I
Sbjct: 155 PAILFRLTCYPLPSHLLSFSDSPAI 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAE1322405.13.3e-1136.55unnamed protein product [Sepia pharaonis][more]
MBO4653699.11.2e-0825.85zinc-ribbon domain-containing protein [Lachnospiraceae bacterium][more]
CAE1298543.12.9e-0732.89unnamed protein product [Sepia pharaonis][more]
MBN8962059.13.2e-0624.84negative regulator of septation ring formation [Hyphomicrobiales bacterium][more]
CAE1178059.15.5e-0631.72unnamed protein product [Sepia pharaonis][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008233.1Lag0008233.1mRNA