Lag0008214 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008214
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Nucleolar protein 58-like
Location	chr9: 14944438 .. 14945297 (-)
RNA-Seq Expression	Lag0008214
Synteny	Lag0008214

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCAATTTTTGCCAAGAGGCCGAGGACTAGGTCAATGGATGCCTCTCCTGCAGTTCATCCTACCATCGCACCGCCGAGCCAAAGGGAAATCACCTAAGGTTGCATCTCCAAAAATCCATTCACAGAGGTATTTAGAGATGTTAATTTTCAGGAACGGATGGAGATCATGAGAAAGAGAGATTTCCTCAATGAAAAGGGATTTCTAACAGAGCAGGAGCACTGCCAGAGTTCGTAACAAGAGTTATCTTCCAGTACAAGTGGCAGGAGTTCTGTGCTCACACTCAGGAGGCTGTCGTGCCTTTAGTTTGAGAGTTTTATGTCGGTCTGAGGGAGGAGAGTATAGCATGGCGGTTGTGAGGGGGAAGATGGTCAGTTTCTCCTCAGTCGACATTAATAGGGTGTACAGGATCAAGGCACCTTGAATCGAGAGGAATGATGTGATAAAGAACCCTTCGGCCAAACAGATGAAAGAAGCTCTGAAACTTGTGGCCAACAAGGGGTTCAGTGGAAAGAATCACAGACGAAAGTGAAGTCTTTAGTGCCAAGTGACCTAAAGCCAGAATCGACAGTTTGGCTTCACTTCGTCAAAAACCGCTTGATGCCAACCACCCACGACAGCACAATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGGAGATCAACGTGGGGAGCATTATCTGGGATGAGATTTTAGACTGTGGGAGAAAGCAAGCAGGCAAGCTTTTCTTTGGATCACTCATCACCCAGCTTTGCCAAAGGGTGAAGATTGTTCCACGCAAGGACGAGGAGCGTCACTTCTTCAAGCCGACCATTGACCTGGCCAATACGCTGACTCAATAA

mRNA sequence

ATGACCCAATTTTTGCCAAGAGGCCGAGGACTAGGTCAATGGATGCCTCTCCTGCAGTTCATCCTACCATCGCACCGCCGAGCCAAAGGGAAATCACCTAAGAGCAGGAGCACTGCCAGAGTTCGTAACAAGAGTTATCTTCCAGTACAAGTGGCAGGAGTTCTGTGCTCACACTCAGGAGGCTGTCGTGCCTTTAGTTTGAGAGTTTTATGTCGGTCTGAGGGAGGAGAGTATAGCATGGCGGTTGTGAGGGGGAAGATGTGGAAAGAATCACAGACGAAAGTGAAGTCTTTAGTGCCAAGTGACCTAAAGCCAGAATCGACAGTTTGGCTTCACTTCGTCAAAAACCGCTTGATGCCAACCACCCACGACAGCACAATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGGAGATCAACGTGGGGAGCATTATCTGGGATGAGATTTTAGACTGTGGGAGAAAGCAAGCAGGCAAGCTTTTCTTTGGATCACTCATCACCCAGCTTTGCCAAAGGGTGAAGATTGTTCCACGCAAGGACGAGGAGCGTCACTTCTTCAAGCCGACCATTGACCTGGCCAATACGCTGACTCAATAA

Coding sequence (CDS)

ATGACCCAATTTTTGCCAAGAGGCCGAGGACTAGGTCAATGGATGCCTCTCCTGCAGTTCATCCTACCATCGCACCGCCGAGCCAAAGGGAAATCACCTAAGAGCAGGAGCACTGCCAGAGTTCGTAACAAGAGTTATCTTCCAGTACAAGTGGCAGGAGTTCTGTGCTCACACTCAGGAGGCTGTCGTGCCTTTAGTTTGAGAGTTTTATGTCGGTCTGAGGGAGGAGAGTATAGCATGGCGGTTGTGAGGGGGAAGATGTGGAAAGAATCACAGACGAAAGTGAAGTCTTTAGTGCCAAGTGACCTAAAGCCAGAATCGACAGTTTGGCTTCACTTCGTCAAAAACCGCTTGATGCCAACCACCCACGACAGCACAATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGGAGATCAACGTGGGGAGCATTATCTGGGATGAGATTTTAGACTGTGGGAGAAAGCAAGCAGGCAAGCTTTTCTTTGGATCACTCATCACCCAGCTTTGCCAAAGGGTGAAGATTGTTCCACGCAAGGACGAGGAGCGTCACTTCTTCAAGCCGACCATTGACCTGGCCAATACGCTGACTCAATAA

Protein sequence

MTQFLPRGRGLGQWMPLLQFILPSHRRAKGKSPKSRSTARVRNKSYLPVQVAGVLCSHSGGCRAFSLRVLCRSEGGEYSMAVVRGKMWKESQTKVKSLVPSDLKPESTVWLHFVKNRLMPTTHDSTISVDRVMLLYCLMKGLEINVGSIIWDEILDCGRKQAGKLFFGSLITQLCQRVKIVPRKDEERHFFKPTIDLANTLTQ

Homology

[Close]

BLAST of Lag0008214 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-15
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 103 LKPESTVWLHFVKNRLMPTTHDSTISVDRVMLLYCLMKGLEINVGSIIWDEILDCGRKQA 162
           L P + VW HF+K+RL+PTTH  T+S DR++LLY ++ G  INVG +I  EI  C  +++
Sbjct: 41  LTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKS 100

Query: 163 GKLFFGSLITQLCQRVKIVPRKDEERHFFKPTID 197
           G LFF SLITQLC+  +     +EE+      ID
Sbjct: 101 GALFFPSLITQLCRNARAPFLVNEEKLHITGEID 134

[Close]

BLAST of Lag0008214 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 92.4 bits (228), Expect = 4.7e-15
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 85  GKMWKESQTKVKSLVPSDLKPESTVWLHFVKNRLMPTTHDSTISVDRVMLLYCLMKGLEI 144
           G  W  S     + + S L P + VW HF+K+RL+PTTH  T+S DR++LL+ ++ G  I
Sbjct: 152 GAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSI 211

Query: 145 NVGSIIWDEILDCGRKQAGKLFFGSLITQLCQRVKIVPRKDEER 189
           NVG +I  EI  C  ++ G LFF SLIT+LC+  +     +EE+
Sbjct: 212 NVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEK 255

[Close]

BLAST of Lag0008214 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 92.0 bits (227), Expect = 6.2e-15
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 79  SMAVVRGKMWKESQTKVKSLVPSDLKPESTVWLHFVKNRLMPTTHDSTISVDRVMLLYCL 138
           ++A+V G  W  S     + + S L P + VW HF+K+RL+PTTH  T+S + V LLY +
Sbjct: 168 TVAIV-GAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKEHVSLLYSM 227

Query: 139 MKGLEINVGSIIWDEILDCGRKQAGKLFFGSLITQLCQRVKIVPRKDEER 189
           + G  INVG +I  EI  C  +++G LFF SLIT +C+  +     +EE+
Sbjct: 228 LTGKSINVGRMIHREICACAARKSGALFFPSLITSMCRNTRAPYLVNEEK 276

[Close]

BLAST of Lag0008214 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 92.0 bits (227), Expect = 6.2e-15
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 83  VRGKMWKESQTKVKSLVPSDLKPESTVWLHFVKNRLMPTTHDSTISVDRVMLLYCLMKGL 142
           V G  W  S     + + S L P + VW HF+K+ L+PTTH  T+S DR++LL+ ++ G 
Sbjct: 141 VAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDRMLLLHSMLIGK 200

Query: 143 EINVGSIIWDEILDCGRKQAGKLFFGSLITQLCQRVKIVPRKDEER 189
            INVG +I  EI  C  ++ G LFF SLIT+LC+  +     +EE+
Sbjct: 201 SINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEK 246

[Close]

BLAST of Lag0008214 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 91.7 bits (226), Expect = 8.0e-15
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 83  VRGKMWKESQTKVKSLVPSDLKPESTVWLHFVKNRLMPTTHDSTISVDRVMLLYCLMKGL 142
           + G  W  S     + + S L P + VW HF+K+RL+PTTH  T+S +RV+LLY ++ G 
Sbjct: 57  IAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYSMLTGK 116

Query: 143 EINVGSIIWDEILDCGRKQAGKLFFGSLITQLCQRVKIVPRKDEER 189
            INVG II  EI     +++G LFF SLIT++C   +     +EE+
Sbjct: 117 SINVGQIIHREICAYAARKSGALFFPSLITRMCCNARAPYLVNEEK 162

[Close]

BLAST of Lag0008214 vs. ExPASy TrEMBL
Match: A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-15
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 103 LKPESTVWLHFVKNRLMPTTHDSTISVDRVMLLYCLMKGLEINVGSIIWDEILDCGRKQA 162
           L P + VW HF+K+RL+PTTH  T+S DR++LLY ++ G  INVG +I  EI  C  +++
Sbjct: 41  LTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKS 100

Query: 163 GKLFFGSLITQLCQRVKIVPRKDEERHFFKPTID 197
           G LFF SLITQLC+  +     +EE+      ID
Sbjct: 101 GALFFPSLITQLCRNARAPFLVNEEKLHITGEID 134

[Close]

BLAST of Lag0008214 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-15
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 85  GKMWKESQTKVKSLVPSDLKPESTVWLHFVKNRLMPTTHDSTISVDRVMLLYCLMKGLEI 144
           G  W  S     + + S L P + VW HF+K+RL+PTTH  T+S DR++LL+ ++ G  I
Sbjct: 152 GAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSI 211

Query: 145 NVGSIIWDEILDCGRKQAGKLFFGSLITQLCQRVKIVPRKDEER 189
           NVG +I  EI  C  ++ G LFF SLIT+LC+  +     +EE+
Sbjct: 212 NVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEK 255

[Close]

BLAST of Lag0008214 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-15
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 83  VRGKMWKESQTKVKSLVPSDLKPESTVWLHFVKNRLMPTTHDSTISVDRVMLLYCLMKGL 142
           V G  W  S     + + S L P + VW HF+K+ L+PTTH  T+S DR++LL+ ++ G 
Sbjct: 141 VAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDRMLLLHSMLIGK 200

Query: 143 EINVGSIIWDEILDCGRKQAGKLFFGSLITQLCQRVKIVPRKDEER 189
            INVG +I  EI  C  ++ G LFF SLIT+LC+  +     +EE+
Sbjct: 201 SINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEK 246

[Close]

BLAST of Lag0008214 vs. ExPASy TrEMBL
Match: A0A2P5DAQ2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-15
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 79  SMAVVRGKMWKESQTKVKSLVPSDLKPESTVWLHFVKNRLMPTTHDSTISVDRVMLLYCL 138
           ++A+V G  W  S     + + S L P + VW HF+K+RL+PTTH  T+S + V LLY +
Sbjct: 168 TVAIV-GAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKEHVSLLYSM 227

Query: 139 MKGLEINVGSIIWDEILDCGRKQAGKLFFGSLITQLCQRVKIVPRKDEER 189
           + G  INVG +I  EI  C  +++G LFF SLIT +C+  +     +EE+
Sbjct: 228 LTGKSINVGRMIHREICACAARKSGALFFPSLITSMCRNTRAPYLVNEEK 276

[Close]

BLAST of Lag0008214 vs. ExPASy TrEMBL
Match: A0A2P5CPE8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.9e-15
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 83  VRGKMWKESQTKVKSLVPSDLKPESTVWLHFVKNRLMPTTHDSTISVDRVMLLYCLMKGL 142
           + G  W  S     + + S L P + VW HF+K+RL+PTTH  T+S +RV+LLY ++ G 
Sbjct: 57  IAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYSMLTGK 116

Query: 143 EINVGSIIWDEILDCGRKQAGKLFFGSLITQLCQRVKIVPRKDEER 189
            INVG II  EI     +++G LFF SLIT++C   +     +EE+
Sbjct: 117 SINVGQIIHREICAYAARKSGALFFPSLITRMCCNARAPYLVNEEK 162

The following BLAST results are available for this feature:

BLAST of Lag0008214 vs. NCBI nr


Match Name	E-value	Identity	Description
PON59596.1	2.1e-15	46.81	hypothetical protein PanWU01x14_158080 [Parasponia andersonii]	[more]
PON46472.1	4.7e-15	42.31	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON70375.1	6.2e-15	40.91	hypothetical protein PanWU01x14_080440 [Parasponia andersonii]	[more]
PON35554.1	6.2e-15	41.51	hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]	[more]
PON62892.1	8.0e-15	41.51	hypothetical protein PanWU01x14_135680 [Parasponia andersonii]	[more]

BLAST of Lag0008214 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0008214 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5CEY2	1.0e-15	46.81	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE...	[more]
A0A2P5BCG4	2.3e-15	42.31	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5AGA5	3.0e-15	41.51	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5DAQ2	3.0e-15	40.91	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE...	[more]
A0A2P5CPE8	3.9e-15	41.51	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE...	[more]

BLAST of Lag0008214 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008214.1	Lag0008214.1	mRNA