Lag0008170 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008170
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr9: 13745926 .. 13746246 (+)
RNA-Seq Expression	Lag0008170
Synteny	Lag0008170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGCGAAGCCTCCTTCGTTCGATGGTCACTCTGAAAGTTCTGAAGTGGTAGAAGAATGGATTGCAGCGTTGGAAGCGCTATTTCAATTTCTTGGAGCTAATGCCCAACAACGTGTCGAAGGAGCTGCCTTTATGCTCAGACGCTATGCTCGCACTTGGTGGAACGTAGTGCGTCAACCCGAGAATCACCCAGAGAATCCCATTTCATGGTCAGGGTTTAAAGGTCTTGTGCGAGACCATTTTGGCTTGCGTTTTGCTGATGTTGAGCTAGAAGCGCAATTTATCTCGCTTGTTCAAGGGACCATGTCCGTAGAGTAG

mRNA sequence

ATGAGGGCGAAGCCTCCTTCGTTCGATGGTCACTCTGAAAGTTCTGAAGTGGTAGAAGAATGGATTGCAGCGTTGGAAGCGCTATTTCAATTTCTTGGAGCTAATGCCCAACAACGTGTCGAAGGAGCTGCCTTTATGCTCAGACGCTATGCTCGCACTTGGTGGAACGTAGTGCGTCAACCCGAGAATCACCCAGAGAATCCCATTTCATGGTCAGGGTTTAAAGGTCTTGTGCGAGACCATTTTGGCTTGCGTTTTGCTGATGTTGAGCTAGAAGCGCAATTTATCTCGCTTGTTCAAGGGACCATGTCCGTAGAGTAG

Coding sequence (CDS)

ATGAGGGCGAAGCCTCCTTCGTTCGATGGTCACTCTGAAAGTTCTGAAGTGGTAGAAGAATGGATTGCAGCGTTGGAAGCGCTATTTCAATTTCTTGGAGCTAATGCCCAACAACGTGTCGAAGGAGCTGCCTTTATGCTCAGACGCTATGCTCGCACTTGGTGGAACGTAGTGCGTCAACCCGAGAATCACCCAGAGAATCCCATTTCATGGTCAGGGTTTAAAGGTCTTGTGCGAGACCATTTTGGCTTGCGTTTTGCTGATGTTGAGCTAGAAGCGCAATTTATCTCGCTTGTTCAAGGGACCATGTCCGTAGAGTAG

Protein sequence

MRAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQPENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQGTMSVE

Homology

[Close]

BLAST of Lag0008170 vs. NCBI nr
Match: XP_022158749.1 (uncharacterized protein LOC111025213 [Momordica charantia])

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-18
Identity = 49/104 (47.12%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 2   RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQP 61
           R  PP+FDG SE +   EEWI  LEAL+ +LG   Q +V+GA FMLR  A  WW+ V   
Sbjct: 77  RYGPPTFDGESERATAAEEWIRELEALYAYLGCEDQFKVKGAVFMLRGEALNWWDSVAAA 136

Query: 62  ENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQGTMSV 106
           E+H   PI W+ FK L+ D++         EA+F+ LVQGT+SV
Sbjct: 137 EDHANVPIPWARFKNLLYDYYYPEIVKDMKEAEFLHLVQGTLSV 180

[Close]

BLAST of Lag0008170 vs. NCBI nr
Match: XP_022156326.1 (uncharacterized protein LOC111023247 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-18
Identity = 49/104 (47.12%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 2   RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQP 61
           R  PP+FDG SE +  VEEWI  LEAL+ +LG   Q +V+GA FMLR  A  WW+ V   
Sbjct: 46  RYGPPTFDGESERATAVEEWIRELEALYAYLGCEDQFKVKGAVFMLRGEALNWWDSVAAA 105

Query: 62  ENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQGTMSV 106
           E++   PI W+ FK L+ D++         EA+F+ LVQGT+SV
Sbjct: 106 EDYANVPIPWARFKNLLYDYYYPETVKDMKEAEFLHLVQGTLSV 149

[Close]

BLAST of Lag0008170 vs. NCBI nr
Match: XP_022156546.1 (uncharacterized protein LOC111023424 [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-17
Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 2   RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQP 61
           R  PP+F G SE + + EEW+  LEAL+ +LG   Q +V+GA FMLR  A  WW+ V   
Sbjct: 83  RYGPPTFGGGSERATLAEEWVRELEALYAYLGCEDQFKVKGAVFMLRSEALNWWDSVAAT 142

Query: 62  ENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQGTMSV 106
           E+H   P+ W+ FK L+ DH+     +   E +F+ LVQGT++V
Sbjct: 143 EDHANVPVPWARFKNLLYDHYYRETVEDMKEVEFLHLVQGTLTV 186

[Close]

BLAST of Lag0008170 vs. NCBI nr
Match: XP_022155000.1 (uncharacterized protein LOC111022144 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-17
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 2   RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQP 61
           R  PP+FDG SE +   EEWI  LEA + +LG   Q +V+GA FMLR  A  WW+ +   
Sbjct: 19  RYGPPTFDGESERATAAEEWIRELEAFYAYLGCEDQFKVKGAVFMLRGEALNWWDSIAAA 78

Query: 62  ENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQGTMSV 106
           E+H    I W+ FK L+ D++ L       EA+F+ LVQGT+SV
Sbjct: 79  EDHANVTIPWARFKDLLYDYYYLETVKDMKEAEFLHLVQGTLSV 122

[Close]

BLAST of Lag0008170 vs. NCBI nr
Match: XP_022151688.1 (uncharacterized protein LOC111019603 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-17
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 2   RAKPPSFDGHSESSEVVEEWIAALEALFQFLGANAQQRVEGAAFMLRRYARTWWNVVRQP 61
           R  PP+F+G SE + VVEEWI  LEAL+ +LG + Q +V+GA FMLR  A  WW+VV   
Sbjct: 72  RYGPPTFNGESEKATVVEEWIRELEALYTYLGCSDQLKVKGAVFMLRGEALNWWDVVATV 131

Query: 62  ENHPENPISWSGFKGLVRDHFGLRFADVELEAQFISLVQGTMSV 106
           E+H   PI+W+  K L+ D++  +    E E +F+ L Q T+ V
Sbjct: 132 EDHTNEPITWTTSKDLLYDYYFPKTIKDEKEIEFLHLTQRTLMV 175

The following BLAST results are available for this feature:

BLAST of Lag0008170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158749.1	2.4e-18	47.12	uncharacterized protein LOC111025213 [Momordica charantia]	[more]
XP_022156326.1	6.9e-18	47.12	uncharacterized protein LOC111023247 [Momordica charantia]	[more]
XP_022156546.1	2.0e-17	43.27	uncharacterized protein LOC111023424 [Momordica charantia]	[more]
XP_022155000.1	2.6e-17	45.19	uncharacterized protein LOC111022144 [Momordica charantia]	[more]
XP_022151688.1	2.6e-17	45.19	uncharacterized protein LOC111019603 [Momordica charantia]	[more]

BLAST of Lag0008170 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 43..106 e-value: 3.4E-6 score: 27.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008170.1	Lag0008170.1	mRNA