Lag0008063 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008063
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein NAR1
Location	chr9: 11204343 .. 11205597 (-)
RNA-Seq Expression	Lag0008063
Synteny	Lag0008063

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATGGATTCAGAAATCTACAAATGTTGTCAGAAAAATCAAAGTAGGAAAATGCGATTACCATTTTCTAGAGATCATGGCTTGTCCTTCTGGTGATTTTCTGCTTAATAATTTGAATAACTGTGATCAAACCAAGTTATTTGAATGGTAGATTGATCTATATTCAATGTCATTGTTATTAAAACAGGTTGTCTAAATGGAGGAGGCCAAATTAAACCCAAGCCTGGACAATCTTCAAAGGATTTGGTCGAGTTATTAGAAGCTGCTTATCAGGAAAATGTAAGTACATTCATATACAATTTATTATTTATTGCTTCCCATGCCCAATGTGGAACATATTTTGATAATATCCTTTTGTTTATTCTAGTTAAGATGTCATATTGATATTGTTTGTTTGTAAAAGTTGTCTCATGTTGTAAAGGTCTATGAAATATGTGGTTCTTATATCTACTTATCAACTCAAAAGCGAAAGGTGATGACCCATTTGTGTGTCTCTGAAAGCCATCTTGATAAGATTGGGAAGAAAAAACTACATAAATAATAGTAGGGGCAATATGCTGGTAGGACTCATGAAAAGGATAAGCTACTCTTAGGCAGATAGTAAATACTTATGTAGAAGGGACAAGGATGGCAATGTTCCAAGAGTTAGTTAGAGGGGTTGCGGGTTGAGCATATATGTTCAGCAGGAATCTAGGAGTGAGGTAATCAAAGTTTTGGTTAGGGAATGGTAAGGAGAGAAGTGACTTGCACTCTTGGATTGACATAGCGTTTGTAATTGAGCTTGTAGCCCTTCTTGCTTGTTTTCACTCGTTATTGTGAATATGATGGCCATCAGCTATCCATTTGGCTAGTTTGTATGACATACGTGAAATGATCAATAAGAGTTATTTTAGGGGGCGAGGGTCGTGAAGTAGCTATCTGAGTTGGTTAGCTGTTTGTTTGCCAAGTTGCGGACACTCTTTTATTTTGTGATATAACTCAATGTGCTTAATTAGTCTCACATTCCTATTATGTGCTTCTCACCGTTATTGGACTTGCAAGAACCACCGTCCTTTATCTGAGTTTTCTTATATATCTTAATTCTGTGGGGTATGTCATGACAGGTTTTAATTAGATATCCTTTTGAGAACCCAGTGGTGAAAGATATATTTGAGTGGTTAGAGCAGCCAGGTTCAGAGAAGGCCAAGAAGTATATGCACACTGAATACCACCCAGTGGTAAAAAGCATTACGGCCCAACTCCACAACTGGTGA

mRNA sequence

ATGCTATGGATTCAGAAATCTACAAATGTTGTCAGAAAAATCAAAGTAGGAAAATGCGATTACCATTTTCTAGAGATCATGGCTTGTCCTTCTGGTTGTCTAAATGGAGGAGGCCAAATTAAACCCAAGCCTGGACAATCTTCAAAGGATTTGGTCGAGTTATTAGAAGCTGCTTATCAGGAAAATGTTTTAATTAGATATCCTTTTGAGAACCCAGTGGTGAAAGATATATTTGAGTGGTTAGAGCAGCCAGGTTCAGAGAAGGCCAAGAAGTATATGCACACTGAATACCACCCAGTGGTAAAAAGCATTACGGCCCAACTCCACAACTGGTGA

Coding sequence (CDS)

ATGCTATGGATTCAGAAATCTACAAATGTTGTCAGAAAAATCAAAGTAGGAAAATGCGATTACCATTTTCTAGAGATCATGGCTTGTCCTTCTGGTTGTCTAAATGGAGGAGGCCAAATTAAACCCAAGCCTGGACAATCTTCAAAGGATTTGGTCGAGTTATTAGAAGCTGCTTATCAGGAAAATGTTTTAATTAGATATCCTTTTGAGAACCCAGTGGTGAAAGATATATTTGAGTGGTTAGAGCAGCCAGGTTCAGAGAAGGCCAAGAAGTATATGCACACTGAATACCACCCAGTGGTAAAAAGCATTACGGCCCAACTCCACAACTGGTGA

Protein sequence

MLWIQKSTNVVRKIKVGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSSKDLVELLEAAYQENVLIRYPFENPVVKDIFEWLEQPGSEKAKKYMHTEYHPVVKSITAQLHNW

Homology

[Close]

BLAST of Lag0008063 vs. NCBI nr
Match: XP_022142658.1 (protein NAR1 [Momordica charantia])

HSP 1 Score: 207.6 bits (527), Expect = 5.5e-50
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 9   NVVRKIKVGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSSKDLVELLEAAYQENVLIRYP 68
           NVVRKIK GKCDYHFLEIMACPSGCLNGGGQIKPKPGQS KDL+ELLEAAYQENVLIR P
Sbjct: 375 NVVRKIKTGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSPKDLIELLEAAYQENVLIRDP 434

Query: 69  FENPVVKDIF-EWLEQPGSEKAKKYMHTEYHPVVKSITAQLHNW 112
           FENPVVKDI+ EWLEQPGSEKAKK+MHTEYHPVVKSITAQLHNW
Sbjct: 435 FENPVVKDIYKEWLEQPGSEKAKKHMHTEYHPVVKSITAQLHNW 478

[Close]

BLAST of Lag0008063 vs. NCBI nr
Match: XP_038894944.1 (protein NAR1 [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 5.5e-50
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 9   NVVRKIKVGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSSKDLVELLEAAYQENVLIRYP 68
           NVVRKIK GKCDYHFLEIMACPSGCLNGGGQIKPKPGQS KDL+ELLEAAYQENVLIR P
Sbjct: 375 NVVRKIKTGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSPKDLIELLEAAYQENVLIRDP 434

Query: 69  FENPVVKDIF-EWLEQPGSEKAKKYMHTEYHPVVKSITAQLHNW 112
           FENPVVKDI+ EWLEQPGSEKAKK+MHTEYHPVVKSITAQLHNW
Sbjct: 435 FENPVVKDIYKEWLEQPGSEKAKKHMHTEYHPVVKSITAQLHNW 478

[Close]

BLAST of Lag0008063 vs. NCBI nr
Match: KAA0035679.1 (protein NAR1 [Cucumis melo var. makuwa] >TYK30864.1 protein NAR1 [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 7.9e-49
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 9   NVVRKIKVGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSSKDLVELLEAAYQENVLIRYP 68
           NVVRKIK GKCDYHFLEIMACPSGCLNGGGQIKPKPGQS KDL+ELLEAAYQENVL+R P
Sbjct: 157 NVVRKIKTGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSPKDLIELLEAAYQENVLVRDP 216

Query: 69  FENPVVKDIF-EWLEQPGSEKAKKYMHTEYHPVVKSITAQLHNW 112
           F NPVVK+I+ EWLEQPGSEKAKK+MHTEYHPVVKSITAQLHNW
Sbjct: 217 FNNPVVKEIYKEWLEQPGSEKAKKHMHTEYHPVVKSITAQLHNW 260

[Close]

BLAST of Lag0008063 vs. NCBI nr
Match: XP_008463602.1 (PREDICTED: protein NAR1 [Cucumis melo])

HSP 1 Score: 203.8 bits (517), Expect = 7.9e-49
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 9   NVVRKIKVGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSSKDLVELLEAAYQENVLIRYP 68
           NVVRKIK GKCDYHFLEIMACPSGCLNGGGQIKPKPGQS KDL+ELLEAAYQENVL+R P
Sbjct: 314 NVVRKIKTGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSPKDLIELLEAAYQENVLVRDP 373

Query: 69  FENPVVKDIF-EWLEQPGSEKAKKYMHTEYHPVVKSITAQLHNW 112
           F NPVVK+I+ EWLEQPGSEKAKK+MHTEYHPVVKSITAQLHNW
Sbjct: 374 FNNPVVKEIYKEWLEQPGSEKAKKHMHTEYHPVVKSITAQLHNW 417

[Close]

BLAST of Lag0008063 vs. NCBI nr
Match: XP_023001117.1 (protein NAR1-like [Cucurbita maxima])

HSP 1 Score: 202.2 bits (513), Expect = 2.3e-48
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 9   NVVRKIKVGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSSKDLVELLEAAYQENVLIRYP 68
           NVVRKIK GKCDYHFLEIMACPSGCLNGGGQIKPKPGQS KDL+ELLEAAYQENVLIR P
Sbjct: 376 NVVRKIKTGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSPKDLIELLEAAYQENVLIRDP 435

Query: 69  FENPVVKDIF-EWLEQPGSEKAKKYMHTEYHPVVKSITAQLHNW 112
           FENP+VKDI+ EWLE+ GSEKAKK+MHTEYHPVVKSITAQLHNW
Sbjct: 436 FENPMVKDIYKEWLEEAGSEKAKKHMHTEYHPVVKSITAQLHNW 479

[Close]

BLAST of Lag0008063 vs. ExPASy Swiss-Prot
Match: Q94CL6 (Protein NAR1 OS=Arabidopsis thaliana OX=3702 GN=NAR1 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.6e-36
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 5   QKSTNVVRKIKVGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSSKDLVELLEAAYQENVL 64
           Q   N+VR++K  KCDY ++EIMACP+GCLNGGGQIKPK GQS K+L+  LEA Y  +  
Sbjct: 366 QNLQNIVRRVKTRKCDYQYVEIMACPAGCLNGGGQIKPKTGQSQKELIHSLEATYMNDTT 425

Query: 65  IRY-PFENPVVKDIF-EWLEQPGSEKAKKYMHTEYHPVVKSITAQLHNW 112
           +   P++NP  K +F EWL++PGS +AKKY+HT+YHPVVKS+T+QL+NW
Sbjct: 426 LNTDPYQNPTAKRLFEEWLKEPGSNEAKKYLHTQYHPVVKSVTSQLNNW 474

[Close]

BLAST of Lag0008063 vs. ExPASy Swiss-Prot
Match: A2RRV9 (Cytosolic Fe-S cluster assembly factor narfl OS=Danio rerio OX=7955 GN=narfl PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 9   NVVRKIKVGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSSKDLVELLEAAYQENVLIRYP 68
           N+V+K+K GK  YHF+E+MACPSGCLNGGGQ+KP   QS+K+L++ +E  Y+       P
Sbjct: 309 NLVQKLKRGKSPYHFVEVMACPSGCLNGGGQLKPSADQSNKELLQQVEEVYRSE-HPSVP 368

Query: 69  FENPVVKDIFE-WLEQPGSEKAKKYMHTEYHPVVKSITAQLHNW 112
            ++  V ++++ WLE  G EKA++ +HT+YH V K+       W
Sbjct: 369 EDDSQVAELYQSWLESVGEEKARQLLHTQYHAVEKTANGLSIKW 411

[Close]

BLAST of Lag0008063 vs. ExPASy Swiss-Prot
Match: A8WH18 (Cytosolic Fe-S cluster assembly factor narfl OS=Xenopus tropicalis OX=8364 GN=narfl PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.7e-20
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 9   NVVRKIKVGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSSKDLVELLEAAYQENVLIRYP 68
           N+V+K+K G+C YH++E+MACPSGCLNGGGQIK + G+ SKDL++ +E  Y   V    P
Sbjct: 375 NLVQKLKRGRCPYHYVEVMACPSGCLNGGGQIKAE-GEGSKDLLQRVEDLY-NTVRTERP 434

Query: 69  FENPVVKDIF-EWLEQPGSEKAKKYMHTEYHPVVKSITAQLHNW 112
            E   V  ++ +WLE   S KA++ +HT+YH V K  +     W
Sbjct: 435 EEREEVAQLYGDWLEDKDSAKARQALHTQYHAVEKINSGLTIKW 476

[Close]

BLAST of Lag0008063 vs. ExPASy Swiss-Prot
Match: Q16ML2 (Probable cytosolic Fe-S cluster assembly factor AAEL012261 OS=Aedes aegypti OX=7159 GN=AAEL012261 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.1e-20
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 9   NVVRKIKVGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSSKDLVELLEAAYQENVLIRYP 68
           N+V+K+K GKC+YHF+EIMACPSGCLNGG Q++P  GQ+ ++L   LEA Y+  +L +  
Sbjct: 376 NMVQKLKRGKCNYHFIEIMACPSGCLNGGAQVRPNSGQTPRELTAELEAMYK--MLPQSN 435

Query: 69  FENPVVKDIF-EWLEQPG-SEKAKKYMHTEYHPVVKSITAQLHNW 112
            EN  V+ ++  +L+  G + K K+++HT YH + K  TA    W
Sbjct: 436 PENEAVEMVYTTFLDNAGDNNKRKEFLHTSYHQIEKMNTALNIKW 478

[Close]

BLAST of Lag0008063 vs. ExPASy Swiss-Prot
Match: B0WU52 (Probable cytosolic Fe-S cluster assembly factor CPIJ010948 OS=Culex quinquefasciatus OX=7176 GN=CPIJ010948 PE=3 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 9   NVVRKIKVGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSSKDLVELLEAAYQENVLIRYP 68
           N+V+K+K GKC+YH++EIMACPSGCLNGG QI+P  GQS ++L   LEA Y+   L    
Sbjct: 376 NMVQKLKRGKCNYHYIEIMACPSGCLNGGAQIRPTGGQSQRELTAELEALYRS--LPASN 435

Query: 69  FENPVVKDIF-EWLEQPGSEKAKK-YMHTEYHPVVKSITAQLHNW 112
            EN  V+ ++  +L+  G    +K ++HT YHP+ K  TA    W
Sbjct: 436 PENEAVEMVYTTFLDNAGDNNMRKEFLHTSYHPIEKMNTALNIKW 478

The following BLAST results are available for this feature:

BLAST of Lag0008063 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142658.1	5.5e-50	93.27	protein NAR1 [Momordica charantia]	[more]
XP_038894944.1	5.5e-50	93.27	protein NAR1 [Benincasa hispida]	[more]
KAA0035679.1	7.9e-49	90.38	protein NAR1 [Cucumis melo var. makuwa] >TYK30864.1 protein NAR1 [Cucumis melo v...	[more]
XP_008463602.1	7.9e-49	90.38	PREDICTED: protein NAR1 [Cucumis melo]	[more]
XP_023001117.1	2.3e-48	90.38	protein NAR1-like [Cucurbita maxima]	[more]

BLAST of Lag0008063 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CL6	3.6e-36	59.63	Protein NAR1 OS=Arabidopsis thaliana OX=3702 GN=NAR1 PE=1 SV=1	[more]
A2RRV9	1.5e-21	45.19	Cytosolic Fe-S cluster assembly factor narfl OS=Danio rerio OX=7955 GN=narfl PE=...	[more]
A8WH18	4.7e-20	46.15	Cytosolic Fe-S cluster assembly factor narfl OS=Xenopus tropicalis OX=8364 GN=na...	[more]
Q16ML2	8.1e-20	45.71	Probable cytosolic Fe-S cluster assembly factor AAEL012261 OS=Aedes aegypti OX=7...	[more]
B0WU52	1.1e-19	46.67	Probable cytosolic Fe-S cluster assembly factor CPIJ010948 OS=Culex quinquefasci...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003149	Iron hydrogenase, small subunit	SMART	SM00902	Fe_hyd_SSU_2	coord: 45..101 e-value: 1.7E-7 score: 40.9
IPR003149	Iron hydrogenase, small subunit	PFAM	PF02256	Fe_hyd_SSU	coord: 62..99 e-value: 3.9E-9 score: 36.4
None	No IPR available	GENE3D	3.40.50.1780		coord: 33..66 e-value: 1.3E-22 score: 82.6
None	No IPR available	GENE3D	3.40.950.10		coord: 6..94 e-value: 1.3E-22 score: 82.6
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 8..111
None	No IPR available	PANTHER	PTHR11615:SF258	CYTOSOLIC FE-S CLUSTER ASSEMBLY FACTOR CG17683-RELATED	coord: 8..111
IPR004108	Iron hydrogenase, large subunit, C-terminal	PFAM	PF02906	Fe_hyd_lg_C	coord: 5..37 e-value: 2.2E-10 score: 40.6
IPR009016	Iron hydrogenase	SUPERFAMILY	53920	Fe-only hydrogenase	coord: 6..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008063.1	Lag0008063.1	mRNA