Lag0008058 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008058
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr9: 10978739 .. 10979080 (-)
RNA-Seq ExpressionLag0008058
SyntenyLag0008058
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATCTCGTTGAGCGATGGAGGAGATGGAACCTAACGGAAAAGGAAGGAAGAGTGGTAGAAGCAGTGGATTGCAAGTTGTTGTTTGCGGCTGAGGACATTGATTTGTGTGTGGTTGCAAAACTGATTTCTAGTAAGGTGGCCAATTGTGCTGCTTACAGATCGGTCATGAGATCCGTTTGGAGGGTTCACCAACAGACAAGAATTGAGTCGGCAGGGGAGAATATTTTTTTCATCTATTTCAAGTCTAAGATGGAAAAGGCGAGAGTGTTGAGGTCTAGGCCATGGACGTTTGACAAGTCCCTCCTAGTGATGGTTTCGCCGAAGGAGAATGATTAG

mRNA sequence

ATGGATGATCTCGTTGAGCGATGGAGGAGATGGAACCTAACGGAAAAGGAAGGAAGAGTGGTAGAAGCAGTGGATTGCAAGTTGTTGTTTGCGGCTGAGGACATTGATTTGTGTGTGGTTGCAAAACTGATTTCTAGTAAGGTGGCCAATTGTGCTGCTTACAGATCGGTCATGAGATCCGTTTGGAGGGTTCACCAACAGACAAGAATTGAGTCGGCAGGGGAGAATATTTTTTTCATCTATTTCAAGTCTAAGATGGAAAAGGCGAGAGTGTTGAGGTCTAGGCCATGGACGTTTGACAAGTCCCTCCTAGTGATGGTTTCGCCGAAGGAGAATGATTAG

Coding sequence (CDS)

ATGGATGATCTCGTTGAGCGATGGAGGAGATGGAACCTAACGGAAAAGGAAGGAAGAGTGGTAGAAGCAGTGGATTGCAAGTTGTTGTTTGCGGCTGAGGACATTGATTTGTGTGTGGTTGCAAAACTGATTTCTAGTAAGGTGGCCAATTGTGCTGCTTACAGATCGGTCATGAGATCCGTTTGGAGGGTTCACCAACAGACAAGAATTGAGTCGGCAGGGGAGAATATTTTTTTCATCTATTTCAAGTCTAAGATGGAAAAGGCGAGAGTGTTGAGGTCTAGGCCATGGACGTTTGACAAGTCCCTCCTAGTGATGGTTTCGCCGAAGGAGAATGATTAG

Protein sequence

MDDLVERWRRWNLTEKEGRVVEAVDCKLLFAAEDIDLCVVAKLISSKVANCAAYRSVMRSVWRVHQQTRIESAGENIFFIYFKSKMEKARVLRSRPWTFDKSLLVMVSPKEND
Homology
BLAST of Lag0008058 vs. NCBI nr
Match: XP_022158119.1 (uncharacterized protein LOC111024676, partial [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-20
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 0

Query: 1   MDDLVERWRRWNLTEKEGRVVEAVDCKLLFAAEDIDLCVVAKLISSKVANCAAYRSVMRS 60
           MD++ E W  +NLT +E       + + +  AE+I LC V KL +SK  +  A  SVM+ 
Sbjct: 1   MDEITELWENFNLTNEEEETFIVDNQQPILTAENIQLCGVGKLHTSKRISAKALASVMKQ 60

Query: 61  VWRVHQQTRIESAGENIFFIYFKSKMEKARVLRSRPWTFDKSLLVMVSPKEND 114
           VW++H+ TRIE+AG NI+ I FK+ +EK RVL S PWTFDKSL V+VSP   D
Sbjct: 61  VWKIHESTRIEAAGLNIYVIAFKTMVEKKRVLSSGPWTFDKSLFVLVSPTAAD 113

BLAST of Lag0008058 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 7.9e-20
Identity = 55/109 (50.46%), Postives = 70/109 (64.22%), Query Frame = 0

Query: 1   MDDLVERWRRWNLTEKEGRVVEAVDCKLLFAAEDIDLCVVAKLISSKVANCAAYRSVMRS 60
           MD++ + W  +  T  E   V     K +  A+++ LCVVAKL +SK  +  A RSVM+S
Sbjct: 1   MDEITDLWEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 60

Query: 61  VWRVHQQTRIESAGENIFFIYFKSKMEKARVLRSRPWTFDKSLLVMVSP 110
           VWRVH  TR E  G NI+ I FKS  EK+RVL S PWTF+KSLLV+ SP
Sbjct: 61  VWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSP 109

BLAST of Lag0008058 vs. NCBI nr
Match: XP_022155933.1 (uncharacterized protein LOC111022932 [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 3.7e-17
Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 0

Query: 1   MDDLVERWRRWNLTEKEGRVVEAVDCKLLFAAEDIDLCVVAKLISSKVANCAAYRSVMRS 60
           MD++ E W  + LT+++   +     K L   E++    V KL +SK  +  A+RSVM+S
Sbjct: 1   MDEITELWENFTLTKEKEETIIIDSEKPLMTPENVQRYAVGKLHTSKRISVEAFRSVMKS 60

Query: 61  VWRVHQQTRIESAGENIFFIYFKSKMEKARVLRSRPWTFDKSLLVMVSPKEND 114
           +W+VH+ T IE+AG N++ I FKS  EK RVL S PW+F+ SLLV+ SP   D
Sbjct: 61  LWKVHESTHIETAGMNLYVIVFKSMAEKNRVLTSGPWSFETSLLVLTSPTATD 113

BLAST of Lag0008058 vs. NCBI nr
Match: XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 0

Query: 1   MDDLVERWRRWNLTEKEGRVVEAVDCKLLFAAEDIDLCVVAKLISSKVANCAAYRSVMRS 60
           MDD+ + W  + L ++E   +   + K +   ++I LC V KL  SK     A+ SVM+ 
Sbjct: 1   MDDITKLWENFTLIKEEEDTIVIDNQKPILTVDNIQLCAVGKLHPSKRITVEAFASVMKQ 60

Query: 61  VWRVHQQTRIESAGENIFFIYFKSKMEKARVLRSRPWTFDKSLLVMV 108
           VW++H  TRIE+AG NI+ I FK+  EK RV    PWTFDKSLL++V
Sbjct: 61  VWKIHNSTRIETAGLNIYVIAFKTMAEKIRVFSLGPWTFDKSLLILV 107

BLAST of Lag0008058 vs. NCBI nr
Match: XP_042962438.1 (uncharacterized protein LOC122296703 [Carya illinoinensis])

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-11
Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = 0

Query: 2   DDLVERWRRWNLTEKEGRVVEAVDCKLLFAAEDIDLCVVAKLISSKVANCAAYRSVMRSV 61
           +DL + W    LTE E   V+  D  L+ AA+    C++AK+I+ ++ N  A+RS M  V
Sbjct: 4   EDLSKLWEGLTLTEDEQAFVKVSDKDLMEAAQRGSFCLLAKVITERIFNKEAFRSTMLQV 63

Query: 62  WRVHQQTRIESAGENIFFIYFKSKMEKARVLRSRPWTFDKSLL 105
           W++         GE+ F + F  K++K ++LR RPWTFD+SL+
Sbjct: 64  WKLEGAVTFTELGESSFMMEFGMKVDKDKILRGRPWTFDRSLI 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158119.12.1e-2048.67uncharacterized protein LOC111024676, partial [Momordica charantia][more]
XP_022149484.17.9e-2050.46uncharacterized protein LOC111017902 [Momordica charantia][more]
XP_022155933.13.7e-1743.36uncharacterized protein LOC111022932 [Momordica charantia][more]
XP_022156711.11.8e-1643.93uncharacterized protein LOC111023555 [Momordica charantia][more]
XP_042962438.11.3e-1137.86uncharacterized protein LOC122296703 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 32..106
e-value: 2.1E-10
score: 40.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008058.1Lag0008058.1mRNA