Lag0008036 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008036
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribosomal protein L4/L1 family
Location	chr9: 10324025 .. 10324653 (-)
RNA-Seq Expression	Lag0008036
Synteny	Lag0008036

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAGACAGACGACCGGTGGGGAGAAGAACGAAAAAGATACGGCGAGAGACGTCGACAGCGAAGGAAGAAGGCGATCGCACGACGGAAAGATGCGTCGGGAGACGGCACGGCAGTGGAGGAAGAAGGCGATATCGTGCGATGGGGGGGGTCTTTGCGTTTTATCGAATGTGAGAGGAAGAGGGTTGTTGATTTAGGGCTTTAAACAAGGTTCTGCCGACGCTGTTAGTGACGACGTCGGCAGAGCACATCTCTCTTGGCGCGTTAATTGTGCACGTCGAGAGAGGTGACATCTCAACCGACTTCGTCACTAACAACGTCGGCAGAGACCGATAAAAAATTGTCTCTCTCGACGCGGTGGTTAGCTGTGTCGAGAGAGACTATTTTTTCTGACGCGTTTAGTGACTGCGTCGGCAGAAATTCCCCGAAATTGCTTCTCCCCACGTCGTTCCTTGCGTGTTGGGATATATCCCTTCTCTCGATGTGTTTTTGTGAGTTGGGAGAAAGTTGCGTTGGCGAAAAAAACTTTTTTCTTGTAGGGGCAAGGCATGGTATCAGACGACGATCTCAGGTAGTGATTACACCGAGTTCGAGAGCTTCTTGAAATGTCTCAGTGTCTCTCAGTAA

mRNA sequence

ATGTTGCAGACAGACGACCGGTGGGGAGAAGAACGAAAAAGATACGGCGAGAGACGTCGACAGCGAAGGAAGAAGGCGATCGCACGACGGAAAGATGCGTCGGGAGACGGCACGGCAGTGGAGGAAGAAGGCGATATCGGCTTTAAACAAGGTTCTGCCGACGCTGTTAGTGACGACGTCGGCAGAGCACATCTCTCTTGGCGCGTTAATTGTGCACGTCGAGAGAGGGGCAAGGCATGGTATCAGACGACGATCTCAGGTAGTGATTACACCGAGTTCGAGAGCTTCTTGAAATGTCTCAGTGTCTCTCAGTAA

Coding sequence (CDS)

ATGTTGCAGACAGACGACCGGTGGGGAGAAGAACGAAAAAGATACGGCGAGAGACGTCGACAGCGAAGGAAGAAGGCGATCGCACGACGGAAAGATGCGTCGGGAGACGGCACGGCAGTGGAGGAAGAAGGCGATATCGGCTTTAAACAAGGTTCTGCCGACGCTGTTAGTGACGACGTCGGCAGAGCACATCTCTCTTGGCGCGTTAATTGTGCACGTCGAGAGAGGGGCAAGGCATGGTATCAGACGACGATCTCAGGTAGTGATTACACCGAGTTCGAGAGCTTCTTGAAATGTCTCAGTGTCTCTCAGTAA

Protein sequence

MLQTDDRWGEERKRYGERRRQRRKKAIARRKDASGDGTAVEEEGDIGFKQGSADAVSDDVGRAHLSWRVNCARRERGKAWYQTTISGSDYTEFESFLKCLSVSQ

Homology

[Close]

BLAST of Lag0008036 vs. ExPASy Swiss-Prot
Match: Q9XF97 (60S ribosomal protein L4 OS=Prunus armeniaca OX=36596 GN=RPL4 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 77  GKAWYQTTISGSDYTEFESFLKCLSVSQ 105
           GKAWYQT IS SDYTEF++F K L VSQ
Sbjct: 381 GKAWYQTMISDSDYTEFDNFTKWLGVSQ 408

[Close]

BLAST of Lag0008036 vs. ExPASy Swiss-Prot
Match: P49691 (60S ribosomal protein L4-2 OS=Arabidopsis thaliana OX=3702 GN=RPL4D PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 3.4e-04
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 72  ARRERGKAWYQTTISGSDYTEFESFLKCLSVSQ 105
           A +  GKAWYQT IS SDYTEF++F K L  SQ
Sbjct: 375 AIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407

The following BLAST results are available for this feature:

BLAST of Lag0008036 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0008036 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF97	1.5e-04	75.00	60S ribosomal protein L4 OS=Prunus armeniaca OX=36596 GN=RPL4 PE=2 SV=1	[more]
P49691	3.4e-04	63.64	60S ribosomal protein L4-2 OS=Arabidopsis thaliana OX=3702 GN=RPL4D PE=1 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008036.1	Lag0008036.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome