Lag0008033 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008033
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein kinase domain-containing protein
Locationchr9: 10285684 .. 10286180 (+)
RNA-Seq ExpressionLag0008033
SyntenyLag0008033
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATATTGTTCATTGTGATCTAAAGCCTAGCAATATATTGCTCGATGACAATATGGTGGCTCATGTGGGGGAATTCGGGTTAGCTAAATTCATGTTGGAAGGATCAAATGATCAATCATCTTTTGGTCAAACCATGTCACTTGCACTTAAAGGTTCTATCGATATATCCCTCCAAGTATTTCTCTTCCATCTAAATTATATACCATATCTTTCAATTGCAATGGTTAGATCTTGATTTTTTGTTGGTATAATAATGAATGAACAATTGCAAATTACAACAAAGGTGGTAGAATTTCCATCGAAGGAGATATATTTAGCTACAGAATACTACTATTAGAGATGATCATCGAAAAAAATCCTACTGATGACACATTTGATAACGATGTGGATATTCTTTTTTTTTTTTTTTTTTTTGCTATAGTGGCATTGCCTCAAGGTGCCTTGGATATAATCGACCCTTTGATGCTATTAGAAGAAACACGTCAAGAAGAATAG

mRNA sequence

ATGTATATTGTTCATTGTGATCTAAAGCCTAGCAATATATTGCTCGATGACAATATGGTGGCTCATGTGGGGGAATTCGGGTTAGCTAAATTCATGTTGGAAGGATCAAATGATCAATCATCTTTTGGTCAAACCATGTCACTTGCACTTAAAGTGGCATTGCCTCAAGGTGCCTTGGATATAATCGACCCTTTGATGCTATTAGAAGAAACACGTCAAGAAGAATAG

Coding sequence (CDS)

ATGTATATTGTTCATTGTGATCTAAAGCCTAGCAATATATTGCTCGATGACAATATGGTGGCTCATGTGGGGGAATTCGGGTTAGCTAAATTCATGTTGGAAGGATCAAATGATCAATCATCTTTTGGTCAAACCATGTCACTTGCACTTAAAGTGGCATTGCCTCAAGGTGCCTTGGATATAATCGACCCTTTGATGCTATTAGAAGAAACACGTCAAGAAGAATAG

Protein sequence

MYIVHCDLKPSNILLDDNMVAHVGEFGLAKFMLEGSNDQSSFGQTMSLALKVALPQGALDIIDPLMLLEETRQEE
Homology
[Close]
BLAST of Lag0008033 vs. NCBI nr
Match: XP_023539713.1 (putative receptor-like protein kinase At3g47110 [Cucurbita pepo subsp. pepo] >XP_023539714.1 putative receptor-like protein kinase At3g47110 [Cucurbita pepo subsp. pepo] >XP_023539715.1 putative receptor-like protein kinase At3g47110 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-16
Identity = 59/127 (46.46%), Postives = 66/127 (51.97%), Query Frame = 0 

Query: 3   IVHCDLKPSNILLDDNMVAHVGEFGLAKFMLEGSNDQSSFGQTMSLALK----------- 62
           IVHCDLKPSN+LLDD+MVAHVG+FGLA+FMLEGSNDQSSF QTMSLALK           
Sbjct: 763 IVHCDLKPSNVLLDDDMVAHVGDFGLARFMLEGSNDQSSFSQTMSLALKGSIGYIPPEYA 822

Query: 63  -------------------------------------------VALPQGALDIIDPLMLL 76
                                                      +AL  GAL IIDP +L 
Sbjct: 823 TGGRVSSEGDIFSYGILLLEMIIGKRPTDSAFHSGVDIHMFTSMALSHGALAIIDPYLLY 882

[Close]
BLAST of Lag0008033 vs. NCBI nr
Match: KAG6596349.1 (putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 3.5e-16
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0 

Query: 3   IVHCDLKPSNILLDDNMVAHVGEFGLAKFMLEGSNDQSSFGQTMSLALKVALPQGALDII 62
           IVHCDLKPSN+LLDD+MVAHVG+FGLA+FMLEGSNDQSSF QTMSLALK     G++  I
Sbjct: 886 IVHCDLKPSNVLLDDDMVAHVGDFGLARFMLEGSNDQSSFSQTMSLALK-----GSIGYI 942

Query: 63  DP 65
            P
Sbjct: 946 PP 942

[Close]
BLAST of Lag0008033 vs. NCBI nr
Match: XP_022971303.1 (putative receptor-like protein kinase At3g47110 [Cucurbita maxima])

HSP 1 Score: 94.7 bits (234), Expect = 3.5e-16
Identity = 59/127 (46.46%), Postives = 65/127 (51.18%), Query Frame = 0 

Query: 3   IVHCDLKPSNILLDDNMVAHVGEFGLAKFMLEGSNDQSSFGQTMSLALK----------- 62
           IVHCDLKPSN+LLDD+MVAHVG+FGLA+FMLEGSNDQSSF QTMSLALK           
Sbjct: 724 IVHCDLKPSNVLLDDDMVAHVGDFGLARFMLEGSNDQSSFSQTMSLALKGSIGYIPPEYA 783

Query: 63  -------------------------------------------VALPQGALDIIDPLMLL 76
                                                       AL  GAL IIDP +L 
Sbjct: 784 TGGRVSSEGDTFSYGILLLEMIIGKRPTDKTFHSGVDIHMFTSTALSHGALAIIDPYLLY 843

[Close]
BLAST of Lag0008033 vs. NCBI nr
Match: KAG7027899.1 (putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.7 bits (234), Expect = 3.5e-16
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0 

Query: 3   IVHCDLKPSNILLDDNMVAHVGEFGLAKFMLEGSNDQSSFGQTMSLALKVALPQGALDII 62
           IVHCDLKPSN+LLDD+MVAHVG+FGLA+FMLEGSNDQSSF QTMSLALK     G++  I
Sbjct: 821 IVHCDLKPSNVLLDDDMVAHVGDFGLARFMLEGSNDQSSFSQTMSLALK-----GSIGYI 877

Query: 63  DP 65
            P
Sbjct: 881 PP 877

[Close]
BLAST of Lag0008033 vs. NCBI nr
Match: XP_022145647.1 (putative receptor-like protein kinase At3g47110 [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 6.0e-16
Identity = 59/127 (46.46%), Postives = 68/127 (53.54%), Query Frame = 0 

Query: 3   IVHCDLKPSNILLDDNMVAHVGEFGLAKFMLEGSNDQSSFGQTMSLALK----------- 62
           IVHCDLKP N+LLDD+MVAHVG+FGLA+F+LEGSN +SSFGQTMSLALK           
Sbjct: 842 IVHCDLKPGNVLLDDDMVAHVGDFGLARFILEGSN-ESSFGQTMSLALKGSIGYIPPEYG 901

Query: 63  -------------------------------------------VALPQGALDIIDPLMLL 76
                                                      +ALPQ ALDIIDP +L 
Sbjct: 902 TGGKISIEGDIFSYGILLLEMITGKRPTDEVFGDGVDIHLYIAMALPQHALDIIDPSLLF 961

[Close]
BLAST of Lag0008033 vs. ExPASy Swiss-Prot
Match: C0LGP4 (Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-07
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 3   IVHCDLKPSNILLDDNMVAHVGEFGLAKFMLEGSNDQSSFGQTMSLALK 52
           I HCDLKPSN+LLDD++ AHV +FGLA+ +L+  +++S F Q  S  ++
Sbjct: 835 IAHCDLKPSNVLLDDDLTAHVSDFGLARLLLK-FDEESFFNQLSSAGVR 882

[Close]
BLAST of Lag0008033 vs. ExPASy Swiss-Prot
Match: Q1MX30 (Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-07
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 3   IVHCDLKPSNILLDDNMVAHVGEFGLAKFMLEGSN--DQSSFGQTMSLALKVALPQGALD 62
           +VHCD+K SN+LLD +MVAHVG+FGLA+ +++G++   QS+        +  A P+  + 
Sbjct: 838 VVHCDIKSSNVLLDSDMVAHVGDFGLARILVDGTSLIQQSTSSMGFIGTIGYAAPEYGVG 897

[Close]
BLAST of Lag0008033 vs. ExPASy Swiss-Prot
Match: Q2R2D5 (Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. japonica OX=39947 GN=XA21 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-07
Identity = 21/35 (60.00%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 3   IVHCDLKPSNILLDDNMVAHVGEFGLAKFMLEGSN 38
           +VHCD+K SN+LLD +MVAHVG+FGLA+ +++G++
Sbjct: 850 VVHCDVKSSNVLLDSDMVAHVGDFGLARILVDGTS 884

[Close]
BLAST of Lag0008033 vs. ExPASy Swiss-Prot
Match: A0A075F7E9 (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK1 PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 21/31 (67.74%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 3   IVHCDLKPSNILLDDNMVAHVGEFGLAKFML 34
           I+HCD+KP NILLDDN+VA + +FGLAK +L
Sbjct: 643 IIHCDIKPQNILLDDNLVAKISDFGLAKLLL 673

[Close]
BLAST of Lag0008033 vs. ExPASy Swiss-Prot
Match: Q7FAZ3 (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 OS=Oryza sativa subsp. japonica OX=39947 GN=LECRK1 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 21/31 (67.74%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 3   IVHCDLKPSNILLDDNMVAHVGEFGLAKFML 34
           I+HCD+KP NILLDDN+VA + +FGLAK +L
Sbjct: 643 IIHCDIKPQNILLDDNLVAKISDFGLAKLLL 673

The following BLAST results are available for this feature:
BLAST of Lag0008033 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023539713.12.7e-1646.46putative receptor-like protein kinase At3g47110 [Cucurbita pepo subsp. pepo] >XP... [more]
KAG6596349.13.5e-1675.81putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita a... [more]
XP_022971303.13.5e-1646.46putative receptor-like protein kinase At3g47110 [Cucurbita maxima][more]
KAG7027899.13.5e-1675.81putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita a... [more]
XP_022145647.16.0e-1646.46putative receptor-like protein kinase At3g47110 [Momordica charantia][more]
BLAST of Lag0008033 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
C0LGP41.8e-0751.02Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidop... [more]
Q1MX302.4e-0741.94Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21... [more]
Q2R2D53.1e-0760.00Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. japonica OX=39947 GN=XA... [more]
A0A075F7E92.0e-0667.74G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 OS=Oryza sa... [more]
Q7FAZ32.0e-0667.74G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 OS=Oryza sa... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.510.10Transferase(Phosphotransferase) domain 1coord: 1..71
e-value: 5.0E-13
score: 50.7
NoneNo IPR availablePANTHERPTHR27000:SF733RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATEDcoord: 3..53
NoneNo IPR availablePANTHERPTHR27000LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATEDcoord: 3..53
IPR000719Protein kinase domainPFAMPF00069Pkinasecoord: 2..42
e-value: 5.9E-8
score: 32.4
IPR000719Protein kinase domainPROSITEPS50011PROTEIN_KINASE_DOMcoord: 1..75
score: 12.711427
IPR008271Serine/threonine-protein kinase, active sitePROSITEPS00108PROTEIN_KINASE_STcoord: 3..15
IPR011009Protein kinase-like domain superfamilySUPERFAMILY56112Protein kinase-like (PK-like)coord: 2..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008033.1Lag0008033.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0004672 protein kinase activity