Lag0008013 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008013
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr9: 9988651 .. 9989223 (-)
RNA-Seq Expression	Lag0008013
Synteny	Lag0008013

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTAATCGAGGAGAAGCGCAGAAGTGCCATTACTGATGAGTCCGAGGCCAGAGCTGCCAAAGCTGAAGCCAGGGCTGCCGAGACCGAGGCTAGGTTGGCCGAGGTAGAGGCTAAGAAGGAAAATCTCCCTTCGAAGACTGAGCTTCTGAACACACTAAAGAAGCTCGGAAATCCTTAGGGAGACCTGCAGAAGTTGAAGGACTCGGGAGAGCAAGACCTTGAAGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAACTGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAAACCGTATGATGGCAAGAAAGACCCCGTGGAGCAACTAAACGCCTACAAAAACTGGATGGACTTCCACGGTATCTCAGACGCAATCAGGTGTCGCACATTCTTTTTCACTCTGACAATATTAGCCAAGCATGGGTTTGAAAGGTTGAAGAGAAGATCCATCAACTCTTTCAAGGAATTAGCCCGAGCCTTCCTCGCACAGTTTATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACTGTCAAACAATAG

mRNA sequence

ATGAATCTAATCGAGGAGAAGCGCAGAAGTGCCATTACTGATGAGTCCGAGGCCAGAGCTGCCAAAGCTGAAGCCAGGGCTGCCGAGACCGAGGCTAGGTTGGCCGAGGGAGACCTGCAGAAGTTGAAGGACTCGGGAGAGCAAGACCTTGAAGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAACTGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAAACCGTATGATGGCAAGAAAGACCCCGTGGAGCAACTAAACGCCTACAAAAACTGGATGGACTTCCACGGTATCTCAGACGCAATCAGGTGTCGCACATTCTTTTTCACTCTGACAATATTAGCCAAGCATGGGTTTGAAAGGTTGAAGAGAAGATCCATCAACTCTTTCAAGGAATTAGCCCGAGCCTTCCTCGCACAGTTTATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACTGTCAAACAATAG

Coding sequence (CDS)

ATGAATCTAATCGAGGAGAAGCGCAGAAGTGCCATTACTGATGAGTCCGAGGCCAGAGCTGCCAAAGCTGAAGCCAGGGCTGCCGAGACCGAGGCTAGGTTGGCCGAGGGAGACCTGCAGAAGTTGAAGGACTCGGGAGAGCAAGACCTTGAAGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAACTGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAAACCGTATGATGGCAAGAAAGACCCCGTGGAGCAACTAAACGCCTACAAAAACTGGATGGACTTCCACGGTATCTCAGACGCAATCAGGTGTCGCACATTCTTTTTCACTCTGACAATATTAGCCAAGCATGGGTTTGAAAGGTTGAAGAGAAGATCCATCAACTCTTTCAAGGAATTAGCCCGAGCCTTCCTCGCACAGTTTATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACTGTCAAACAATAG

Protein sequence

MNLIEEKRRSAITDESEARAAKAEARAAETEARLAEGDLQKLKDSGEQDLEELIDQVDPPFTEEVMKTEVPQKFKVPTFKPYDGKKDPVEQLNAYKNWMDFHGISDAIRCRTFFFTLTILAKHGFERLKRRSINSFKELARAFLAQFMGAREQRKPHINLLTVKQ

Homology

[Close]

BLAST of Lag0008013 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 141.0 bits (354), Expect = 9.4e-30
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 49  DLEELIDQVDPPFTEEVMKTEVPQKFKVPTFKPYDGKKDPVEQLNAYKNWMDFHGISDAI 108
           DLEEL+ Q D PFTEE+M+ +VP KFK+PT KP+DG  +PV+ L+AY+ WMD +G+SDAI
Sbjct: 73  DLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMDIYGVSDAI 132

Query: 109 RCRTFFFTLTILAKHGFERLKRRSINSFKELARAFLAQFMGAREQRKPHINLLTVKQ 166
           RCR F  TL   A+  F +LKR SI+SFK LARAF+ QF+G R + +P   LLT+KQ
Sbjct: 133 RCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQ 189

[Close]

BLAST of Lag0008013 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-28
Identity = 66/117 (56.41%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 49  DLEELIDQVDPPFTEEVMKTEVPQKFKVPTFKPYDGKKDPVEQLNAYKNWMDFHGISDAI 108
           DLEEL+DQ D PFTEE+M+ +VP KFK+PT K +D   DPV+ L+AY+ WMD +G+S+A+
Sbjct: 168 DLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAV 227

Query: 109 RCRTFFFTLTILAKHGFERLKRRSINSFKELARAFLAQFMGAREQRKPHINLLTVKQ 166
           RCR F  TL   A+  F +LKR SI+SFK LARAF+ QF+G R + +P   LLT+KQ
Sbjct: 228 RCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQ 284

[Close]

BLAST of Lag0008013 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 5.5e-22
Identity = 54/103 (52.43%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 63  EEVMKTEVPQKFKVPTFKPYDGKKDPVEQLNAYKNWMDFHGISDAIRCRTFFFTLTILAK 122
           EE+MK +VP KFK+PT K +DG  D V+ L+AY+ WMD +G+S+A++CR F  TL+  A+
Sbjct: 2   EEIMKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSAR 61

Query: 123 HGFERLKRRSINSFKELARAFLAQFMGAREQRKPHINLLTVKQ 166
             F +LKR SI+SFK LA+AF+ QF+G R + +P   LLT+KQ
Sbjct: 62  VWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQ 104

[Close]

BLAST of Lag0008013 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 7.2e-22
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 66  MKTEVPQKFKVPTFKPYDGKKDPVEQLNAYKNWMDFHGISDAIRCRTFFFTLTILAKHGF 125
           MK +VP KFK+P  K YDG  DP++ L+ Y  W D +GI++AIRCR F FTLT   +  F
Sbjct: 1   MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 126 ERLKRRSINSFKELARAFLAQFMGAREQRKPHINLLTVKQ 166
           ++LKR+SI+SFKELARAF+ QF G   + +P   LLT+KQ
Sbjct: 61  QQLKRKSISSFKELARAFVTQFAGGWNRSRPVAYLLTIKQ 100

[Close]

BLAST of Lag0008013 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-20
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 66  MKTEVPQKFKVPTFKPYDGKKDPVEQLNAYKNWMDFHGISDAIRCRTFFFTLTILAKHGF 125
           MK +   KFK+P    YDG  DP++ L+AY+ W D + I +AIRCR F FTLT  A++ F
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 126 ERLKRRSINSFKELARAFLAQFMGAREQRKPHINLLTVKQ 166
            +LKR SI+SFKELA AF+ QF+G R + KP   LLT+KQ
Sbjct: 61  RQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQ 100

The following BLAST results are available for this feature:

BLAST of Lag0008013 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159109.1	9.4e-30	58.12	uncharacterized protein LOC111025548 [Momordica charantia]	[more]
XP_022158830.1	1.4e-28	56.41	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022150035.1	5.5e-22	52.43	uncharacterized protein LOC111018307 [Momordica charantia]	[more]
XP_022147761.1	7.2e-22	54.00	uncharacterized protein LOC111016619 [Momordica charantia]	[more]
XP_022158344.1	1.4e-20	53.00	uncharacterized protein LOC111024851 [Momordica charantia]	[more]

BLAST of Lag0008013 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 13..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008013.1	Lag0008013.1	mRNA