Lag0007990 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007990
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr9: 9561608 .. 9562216 (+)
RNA-Seq Expression	Lag0007990
Synteny	Lag0007990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACTAATTGACCAAGTCGACCCACCGCTCACAGAAGAAGTCATGAAAGCTGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAGGTCGTATGATGGCAAGAAAGACTCCGTGCAACATCTAAACGCCTACAAAAACTAGATGGACTTCCACGGTGTCTCAGACGCAATCAAGTGTTGCGCATTTTTTTTTCACTCTAACAGGATAGCCAAGCATTGGTTTGAAAGGTTGAAAAGGAGATCCATCACCTATTTCAAGGATTTAGCCCAAGCGTTCCTTGCACAGTTCATGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTCTTGACAATCAAACAGCAGCCAAGTGAGAGCTTGCGCGATTATATAACGCGTTTCAACGATGAAGCGCTACAGGTTGAGGGATACAGTGAGGGAGCAGCCCTGGTAGCTATCACAGCTGAATTGGAGGATGACAGATTGTTCAATTCAATAGGTAAGAGGCAACCACGAACCTATGTCGAGTTTGTTTCCAGGGCACAGAAGTATATGAGCGTAGAGGAACTACTGAAGTCAAAGAAGTCAGAACGAGAACACAAGAGACATTCTTCAGTCGATTAG

mRNA sequence

ATGGAAAAACTAATTGACCAAGTCGACCCACCGCTCACAGAAGAAGTCATGAAAGCTGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAGGATAGCCAAGCATTGGTTTGAAAGGTTGAAAAGGAGATCCATCACCTATTTCAAGGATTTAGCCCAAGCGTTCCTTGCACAGTTCATGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTCTTGACAATCAAACAGCAGCCAAGTGAGAGCTTGCGCGATTATATAACGCGTTTCAACGATGAAGCGCTACAGGTTGAGGGATACAGTGAGGGAGCAGCCCTGGTAGCTATCACAGCTGAATTGGAGGATGACAGATTGTTCAATTCAATAGGTAAGAGGCAACCACGAACCTATGTCGAGTTTGTTTCCAGGGCACAGAAGTATATGAGCGTAGAGGAACTACTGAAGTCAAAGAAGTCAGAACGAGAACACAAGAGACATTCTTCAGTCGATTAG

Coding sequence (CDS)

ATGGAAAAACTAATTGACCAAGTCGACCCACCGCTCACAGAAGAAGTCATGAAAGCTGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAGGATAGCCAAGCATTGGTTTGAAAGGTTGAAAAGGAGATCCATCACCTATTTCAAGGATTTAGCCCAAGCGTTCCTTGCACAGTTCATGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTCTTGACAATCAAACAGCAGCCAAGTGAGAGCTTGCGCGATTATATAACGCGTTTCAACGATGAAGCGCTACAGGTTGAGGGATACAGTGAGGGAGCAGCCCTGGTAGCTATCACAGCTGAATTGGAGGATGACAGATTGTTCAATTCAATAGGTAAGAGGCAACCACGAACCTATGTCGAGTTTGTTTCCAGGGCACAGAAGTATATGAGCGTAGAGGAACTACTGAAGTCAAAGAAGTCAGAACGAGAACACAAGAGACATTCTTCAGTCGATTAG

Protein sequence

MEKLIDQVDPPLTEEVMKAEVPQKFKVPTFRIAKHWFERLKRRSITYFKDLAQAFLAQFMGAREQRKPHINLLTIKQQPSESLRDYITRFNDEALQVEGYSEGAALVAITAELEDDRLFNSIGKRQPRTYVEFVSRAQKYMSVEELLKSKKSEREHKRHSSVD

Homology

[Close]

BLAST of Lag0007990 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-28
Identity = 81/197 (41.12%), Postives = 113/197 (57.36%), Query Frame = 0


Query: 1   MEKLIDQVDPPLTEEVMKAEVPQKFKVPTFR----------------------------- 60
           +E+L+DQ D P TEE+M+ +VP KFK+PT +                             
Sbjct: 169 LEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVR 228

Query: 61  ----------IAKHWFERLKRRSITYFKDLAQAFLAQFMGAREQRKPHINLLTIKQQPSE 120
                      A+ WF +LKR SI+ FK LA+AF+ QF+G R + +P   LLTIKQ+ +E
Sbjct: 229 CRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTE 288

Query: 121 SLRDYITRFNDEALQVEGYSEGAALVAITAELEDDRLFNSIGKRQPRTYVEFVSRAQKYM 159
           SLRDY+ RFN+E LQVEG ++  +L+A  + + D+ L  S GKR P T+ E +SRAQ+YM
Sbjct: 289 SLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYM 348

[Close]

BLAST of Lag0007990 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-26
Identity = 67/130 (51.54%), Postives = 96/130 (73.85%), Query Frame = 0


Query: 33  AKHWFERLKRRSITYFKDLAQAFLAQFMGAREQRKPHINLLTIKQQPSESLRDYITRFND 92
           A++WF +LKR SI+ FK+LA+AF+ QF+G R + KP   LLTIKQ+ +ESL++Y+ RFN+
Sbjct: 56  ARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQKATESLKEYVARFNE 115

Query: 93  EALQVEGYSEGAALVAITAELEDDRLFNSIGKRQPRTYVEFVSRAQKYMSVEELLK-SKK 152
           E LQVEG ++  AL+A  + ++D+RL  S GKR P T++E +SRAQKYMS  EL+  S+ 
Sbjct: 116 EKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFMEALSRAQKYMSAGELIHLSRD 175

Query: 153 SEREHKRHSS 162
            ERE   +S+
Sbjct: 176 LERERANYST 185

[Close]

BLAST of Lag0007990 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-25
Identity = 78/206 (37.86%), Postives = 111/206 (53.88%), Query Frame = 0


Query: 1   MEKLIDQVDPPLTEEVMKAEVPQKFKVPTFR----------------------------- 60
           +E+L+ Q D P TEE+M+ +VP KFK+PT +                             
Sbjct: 74  LEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMDIYGVSDAIR 133

Query: 61  ----------IAKHWFERLKRRSITYFKDLAQAFLAQFMGAREQRKPHINLLTIKQQPSE 120
                      A+ WF +LKR SI+ FK LA+AF+ QF+G R + +P   LLTIKQ+ +E
Sbjct: 134 CRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQRTAE 193

Query: 121 SLRDYITRFNDEALQVEGYSEGAALVAITAELEDDRLFNSIGKRQPRTYVEFVSRAQKYM 164
           SL DY+ RFN+E LQ+EG ++  +L+A  + + D+ L  S  KR P T+ E +SRAQ+YM
Sbjct: 194 SLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEKRTPSTFSEALSRAQRYM 253

[Close]

BLAST of Lag0007990 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-24
Identity = 71/177 (40.11%), Postives = 98/177 (55.37%), Query Frame = 0


Query: 14  EEVMKAEVPQKFKVPTFR---------------------------------------IAK 73
           EE+MK +VP KFK+PT +                                        A+
Sbjct: 2   EEIMKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSAR 61

Query: 74  HWFERLKRRSITYFKDLAQAFLAQFMGAREQRKPHINLLTIKQQPSESLRDYITRFNDEA 133
            WF +LKR SI+ FK LA+AF+ QF+G R + +P   LLTIKQ+ +ESL DY+ RFN+E 
Sbjct: 62  VWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESLHDYVARFNEEK 121

Query: 134 LQVEGYSEGAALVAITAELEDDRLFNSIGKRQPRTYVEFVSRAQKYMSVEELLKSKK 152
           LQVEG +   +L+A  +++ D+ L  S GK+ P T+ E +SRAQKYMS  E   SK+
Sbjct: 122 LQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKR 178

[Close]

BLAST of Lag0007990 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 58/119 (48.74%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 36  WFERLKRRSITYFKDLAQAFLAQFMGAREQRKPHINLLTIKQQPSESLRDYITRFNDEAL 95
           WF++LKR+SI+ FK+LA+AF+ QF G   + +P   LLTIKQ+ +ESL+DY+ RFN E L
Sbjct: 59  WFQQLKRKSISSFKELARAFVTQFAGGWNRSRPVAYLLTIKQKATESLKDYVARFNKEKL 118

Query: 96  QVEGYSEGAALVAITAELEDDRLFNSIGKRQPRTYVEFVSRAQKYMSVEELLKSKKSER 155
           QVEG ++   L+   + ++D++L  S GKR   T+ E  SRAQ YMSV EL+ SK+  +
Sbjct: 119 QVEGLTDAVVLLVFISGVKDEQLVFSFGKRTSGTFSEARSRAQTYMSVGELIHSKRDPK 177

The following BLAST results are available for this feature:

BLAST of Lag0007990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158830.1	3.9e-28	41.12	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022158344.1	2.1e-26	51.54	uncharacterized protein LOC111024851 [Momordica charantia]	[more]
XP_022159109.1	1.4e-25	37.86	uncharacterized protein LOC111025548 [Momordica charantia]	[more]
XP_022150035.1	1.5e-24	40.11	uncharacterized protein LOC111018307 [Momordica charantia]	[more]
XP_022147761.1	1.2e-21	48.74	uncharacterized protein LOC111016619 [Momordica charantia]	[more]

BLAST of Lag0007990 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 33..110 e-value: 9.4E-12 score: 45.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007990.1	Lag0007990.1	mRNA