Lag0007980 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007980
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	acetylornithine deacetylase-like
Location	chr9: 9281756 .. 9284091 (+)
RNA-Seq Expression	Lag0007980
Synteny	Lag0007980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCATTTTTTTTGCTTCTACAGAATTGGATTTTTTCACGAATCTTTTGCCATTGCTACCTTGGTATGGTTTCTTCACTACTGGTATGAACCTACTGGTTCGTTTTCCCCATTTTTTTTTTGTTTTTTTAGGGCACTATAAAAATACTACTTTTTTTTTTCATCTTCGTCGATTTAACCGGTGAGTTTTTACTTTTGCGTGAAACTGGAAACATACTCATTTTTTGTTCATCTTCTATGTTTCTTTTTGCTTATATATATAAATTTTTCCTCTTCGTCTGGGTTTTCTTTTTTGCTTCTTTTGAGTTTTATTTTACTTATGCGAAATTGGAAAAATATATTTTTTTTCTTCTGCATTTGCTTCTGCGTCTTTTTTTTGTACATTTTTAATCTACGTCTTCCGTATGGGTTTTTAATATTTGTTTCTTTGGTACATACCTGTTAAATACCTGATGTTTATTCTACATGTGGTATTTATTCTACATTTGCTTTTGCGTCTAGGTTTCTGCATTTTTTTTTGCTTTTGCGATTTTAATGTACGTCTTCCGTATGTGTTTTTAATCTGCGTTTCTTTGGTAAATACTCGATAATTACCCGTTTTAATTCGCGTCTTCCGTATCGGTTTTTTTGCTACTATTAAATACCCGTTAAATGCTCATTTTTGCTTATGCCCTTTTTTTTTGCTACTGGAACTAGTGCGTTTTAGTTTGGGTTTTCAAGGAACGCAAGCATCTTTGGTTGGTCTTATTACTTCTTATGTTCATGAATTTAACATGTAATTGGGGTTAGATTAAATACCCCTAAATATATATATTATGTTTAGGATAGTTATTTAAATACCCCTTGTTTGAATGTATAAAATTTTTAAGACATAGAATAAATACCACCTTGTTTTAAATACCCATGTTTGAATGTATAAAAATTTTGAGATATAGAATAATTTGGGACATAGAATATATACTTCGGTTGGTAAGATGGTTTTGGATATATATAACATGTTTTGGATGACTGATTAAATACCCATGGTTGGATATATATATATATAATGTTTGGATATATGTATAATGTTTGGGATGGACGATTAAATATATATACCATGGATTTATTTTCCATGTTCGTAGAATCAAAATGGTGAAGATAAAAAAGTTGCGAACACGGAAAGCCGAAAAAGTCAACAAATTTTAAGATCTTCGAGTAAGAATCCAAATAAAAAGACAAATGAAATGGAAACATAATTCTTCCTCTCATTCCAATTGTCACCAAATAGCATGCGTCCAAGAATAAGGTTGGTACCTTAAAAATGAAAATATAAGGTATATTCGGTAAATAGTGACCGACAACCCCTTTTTTTAATTATTTTATTAGATTTTTTTTTTTTGTAAAATTACAAATTTATGAGTTACCAAAAATGGATAAGAAAATCTAAGAATAAAAAATCTAAAATAATAAATTACAAATTTGGTGGTTGAAAAGAAAATTATCCACGATTCTACAAAAGATTTTCTCTAACTTTTAGATATGGGGTAAAAATGACAAAAATTGGATTGCTTGAAAACCAAAGAAATAGAAAACATGGTCTTGCAAAATTGGCTAAAATTGAAAAATGGAAAGAATACATTTTTCCATAAACAAAAGGCTAACAAAAATTGTTGTGAATATGAGCCGTGAAAATTGAATGATGAACAAAAACTGGGCACAAAACCCTAGTGAGCAACCAAAATGAGAGAAAAAAAAAAGAAAAGGAAATTGTTGTGCGCCAAAATGAAAAAAAATAAAAGAAAATTTATGTGAAATTATTTCCATTAAGAAGTTAACAAAATTCTAACATTTAGGAGAAAAAAAACAAATGGAAGACCAAAATCTATAATAAATAATATAATCTAATATTATATTTAATTAAAATTAATATAATCATTAAATGAAAAGGGCATTTTGGTAAAAAAAATTAACTCAACTAAGGTGTAAAAATCCACCAATAATAATTTAGGACATTTCCTAATTTTCTCATCTTTTAATTATTTCCTCGGTTGATTTTAATTTGTTTCTCATCATCTTTTTGTTATATAATTACTACTTGTAGGATGATGGCTATGATGTTCAGGCTGAAGGCTATGGTATGATTTTGTTAATTATGAATTCATTTCTTTACAACATTACAATGTGTTTTCTTAGCACATAGTTAACTCAATTTAATTTCTCTTCATTTCTTTTTGATTTTGTAATTTCAGGTTTAAGTGCTACATACCATGCTGAGAATGAGTATTGTAATTTTAGTGATATGGCCAATGGCTACAAAGTTTTCGCCAGCATCATCTCCCAACTCAAAGAAAATTGA

mRNA sequence

ATGTGCATTTTTTTTGCTTCTACAGAATTGGATTTTTTCACGAATCTTTTGCCATTGCTACCTTGGTATGGTTTCTTCACTACTGGTATGAACCTACTGGATGATGGCTATGATGTTCAGGCTGAAGGCTATGGTTTAAGTGCTACATACCATGCTGAGAATGAGTATTGTAATTTTAGTGATATGGCCAATGGCTACAAAGTTTTCGCCAGCATCATCTCCCAACTCAAAGAAAATTGA

Coding sequence (CDS)

ATGTGCATTTTTTTTGCTTCTACAGAATTGGATTTTTTCACGAATCTTTTGCCATTGCTACCTTGGTATGGTTTCTTCACTACTGGTATGAACCTACTGGATGATGGCTATGATGTTCAGGCTGAAGGCTATGGTTTAAGTGCTACATACCATGCTGAGAATGAGTATTGTAATTTTAGTGATATGGCCAATGGCTACAAAGTTTTCGCCAGCATCATCTCCCAACTCAAAGAAAATTGA

Protein sequence

MCIFFASTELDFFTNLLPLLPWYGFFTTGMNLLDDGYDVQAEGYGLSATYHAENEYCNFSDMANGYKVFASIISQLKEN

Homology

[Close]

BLAST of Lag0007980 vs. NCBI nr
Match: XP_038888364.1 (acetylornithine deacetylase-like [Benincasa hispida])

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-13
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 31  NLLDDGYDVQAEGYGLSATYHAENEYCNFSDMANGYKVFASIISQLKE 79
           +L  DGYDVQ  GYGLS TYHA+NEYCNFSDMANGYKVFASIISQL+E
Sbjct: 390 DLQKDGYDVQNVGYGLSDTYHADNEYCNFSDMANGYKVFASIISQLEE 437

[Close]

BLAST of Lag0007980 vs. NCBI nr
Match: KAG7036186.1 (Acetylornithine deacetylase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.7 bits (208), Expect = 3.8e-13
Identity = 38/49 (77.55%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 31  NLLDDGYDVQAEGYGLSATYHAENEYCNFSDMANGYKVFASIISQLKEN 80
           +L ++GYDVQA GYGL+ATYHA +EYCN+SDMANGYKVFASIISQL+E+
Sbjct: 390 DLQENGYDVQAIGYGLTATYHANDEYCNYSDMANGYKVFASIISQLEED 438

[Close]

BLAST of Lag0007980 vs. NCBI nr
Match: XP_022995510.1 (acetylornithine deacetylase-like [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 6.5e-13
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 31  NLLDDGYDVQAEGYGLSATYHAENEYCNFSDMANGYKVFASIISQLKEN 80
           +L D GYDVQ  GYGL+ATYHA +EYCN+SDMANGYKVFASIISQL+E+
Sbjct: 390 DLQDKGYDVQTIGYGLTATYHANDEYCNYSDMANGYKVFASIISQLEED 438

[Close]

BLAST of Lag0007980 vs. NCBI nr
Match: XP_038887566.1 (acetylornithine deacetylase-like [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 8.5e-13
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 32  LLDDGYDVQAEGYGLSATYHAENEYCNFSDMANGYKVFASIISQLKE 79
           L ++GYDVQ  GYGL+ TYHA+NEYCNFSDMANGYKVFASIISQL+E
Sbjct: 391 LQNEGYDVQTIGYGLTDTYHADNEYCNFSDMANGYKVFASIISQLEE 437

[Close]

BLAST of Lag0007980 vs. NCBI nr
Match: XP_023533590.1 (acetylornithine deacetylase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 37/49 (75.51%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 31  NLLDDGYDVQAEGYGLSATYHAENEYCNFSDMANGYKVFASIISQLKEN 80
           +L ++GYDVQ  GYGL+ATYHA +EYCN+SDMANGYKVFASIISQL+E+
Sbjct: 390 DLQENGYDVQTIGYGLTATYHANDEYCNYSDMANGYKVFASIISQLEED 438

[Close]

BLAST of Lag0007980 vs. ExPASy Swiss-Prot
Match: Q9C5C4 (Acetylornithine deacetylase OS=Arabidopsis thaliana OX=3702 GN=At4g17830 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.3e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 31  NLLDDGYDVQAEGYGLSATYHAENEYCNFSDMANGYKVFASIISQLKE 79
           +L D+G+DVQ  GYGL ATYHA+NEYC  +DM  G+ VF  IISQL++
Sbjct: 392 DLQDEGFDVQTSGYGLMATYHAKNEYCLLTDMCQGFDVFIRIISQLEQ 439

[Close]

BLAST of Lag0007980 vs. ExPASy Swiss-Prot
Match: P54638 (Acetylornithine deacetylase OS=Dictyostelium discoideum OX=44689 GN=argE PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-05
Identity = 21/49 (42.86%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 31  NLLDDGYDVQAEGYGLSATYHAENEYCNFSDMANGYKVFASIISQLKEN 80
           +L D G+D+Q  G+G   TYHA+NEY   SD  N  K+ +  I  L++N
Sbjct: 399 DLQDSGFDIQITGFGKEETYHADNEYALLSDFKNAIKILSRTIDLLEKN 447

The following BLAST results are available for this feature:

BLAST of Lag0007980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888364.1	1.7e-13	83.33	acetylornithine deacetylase-like [Benincasa hispida]	[more]
KAG7036186.1	3.8e-13	77.55	Acetylornithine deacetylase [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022995510.1	6.5e-13	77.55	acetylornithine deacetylase-like [Cucurbita maxima]	[more]
XP_038887566.1	8.5e-13	80.85	acetylornithine deacetylase-like [Benincasa hispida]	[more]
XP_023533590.1	1.1e-12	75.51	acetylornithine deacetylase-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0007980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5C4	8.3e-11	60.42	Acetylornithine deacetylase OS=Arabidopsis thaliana OX=3702 GN=At4g17830 PE=2 SV...	[more]
P54638	1.0e-05	42.86	Acetylornithine deacetylase OS=Dictyostelium discoideum OX=44689 GN=argE PE=1 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43808:SF21	SUBFAMILY NOT NAMED	coord: 31..78
None	No IPR available	PANTHER	PTHR43808	ACETYLORNITHINE DEACETYLASE	coord: 31..78
None	No IPR available	SUPERFAMILY	53187	Zn-dependent exopeptidases	coord: 13..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007980.1	Lag0007980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity