Lag0007974 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007974
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	zf-RVT domain-containing protein
Location	chr9: 9207460 .. 9209149 (+)
RNA-Seq Expression	Lag0007974
Synteny	Lag0007974

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTATATCCTTGATCCCATTGTCCTCTCACAAACTCAAGACTCGTGGAAATGGCTTCCTAGCTCTAGTGGCTTCTTCTCCACTAAATCTTTGTTGGTTGATATGGGAAATTCAACCACCTGCTTGGAGACATCTCTGGTTCGGGCTATTTGGAGAGACAAGTATCCAAAAAAGATCAAAATTTTCCTTTGGGAAGTGGCACATAGAGCTATTAGTACTAAAGATAATTTACGGGACGAATGCTTACTTTGGCCCTATCACCGAGTCGGTGTTCTTTGTGCAAGTAAAACGACGAAACTCTAGACCACTTATTTTTCCATTGTCCCTATGCTTGGAGGTTCTGGACCAAAATCTTCTCTGTCATTCCCTGGGACATCAAGAGAGTAGTAGGGTGAGGTTTTATTCCAATTAACCAAGTGACTTCCAGGTGAATAAACGAATAAACGACTCTGGGGGGCTTTCAAGAGGGAGAAGTAGTTGGCAAGGGAGGAATTCTCGTATCTTCACCAATGAAGAACAACATCCTAATCTCTTCTTTCTTCAATCATTTACTTATCTCTCTCATGGTATAAATTGATTCCACCCTTTCATAACTATAGTTTATTTTCCCTTATAGCACATTGGAATAGTTTTTTGTAATTCTCTAGATAGGACAGTTCTTTGTAATTTCATTTTATCGATGAAATGATTTGTTTCCAACCCAAAAAAAAAAAACTTATAAATACTACTACCACCCATAGTTTCCTTATTTTGTTAGTTTTTGTAAACCTTTTCAAGAAAGGTAGTTTTTAAAAACTTGTTTTTTATTTTAACTTTGGCTTGGAAATTTTTTTTTTTTTTTTTAATAGGAAACAATAAATTTCATTGATCAAATAAACTTACAAAATGAGAGACCTATCAATTACAAAAAACTTTTCCAATGGGCTTAAGAGAGCTTAAGTCATAATTACAAAAAAGGTAAAATCAATTTACACCAAGTGAGAGCAGTAAAAGTAATCGAAGATGTAAAAGAATCAAAATCCTGGCTAGCATTTGAGAAAATGTGTGAATTCTTATCGAGCCATAATGACCATAGAAAATGCCAAATTAAGTTAAGCCAAAGAGGTTTCTTCTCATTCTTGAAAGGGTGCGCAAGGAGAGTGTTAATCAAAAGGAACCACAAATCATTAGGTAAAGCCATCGACCAACCAAAACTCTATGTGGTGAAAGCCGAAAAGGTTCTAGCAATGAATGAAGAGGTGACTTCGAGATTCTGGACAACTTTTGCACATGATACAGTAGCTAGGAGATAAAGAAACACCCTTCAAGCAAGTGTGTATGACTTTTTTTAGGATAATTTCTGTTATTTCTGTTAGAGTATATATGTTAATATAGTAGCTTATTAGTCTTCGTCCTTTATTGGAATTTTAGTATTATTAGTTTAAGGCTTCTATGTATGCCTATATATGTTTGGCTCTAGTGTATAGAAAGAATATTGGATTCTCTCATATTTGATATAACATGGTATCAGAGTTTAGGGGTCGTTTGGTGCAAGGTTTTGGAGATGGGAATGGGCAAGGGTTTTGTTAGGCCTCCATTAACAAGGTTTATGCAAGGAGGGGTAAAAAAGGAAATCCCACAGGAAGTTAGTTATGTGGGGGGTCGTGCGGAAGCAAGCAAGGGCTGCTGTGGTCCCAAGAGAGAGTAA

mRNA sequence

ATGAATTATATCCTTGATCCCATTGTCCTCTCACAAACTCAAGACTCGTGGAAATGGCTTCCTAGCTCTAGTGGCTTCTTCTCCACTAAATCTTTGTTGGTTGATATGGGAAATTCAACCACCTGCTTGGAGACATCTCTGGTTCGGGCTATTTGGAGAGACAAGTATCCAAAAAAGATCAAAATTTTCCTTTGGGAAGTGGCACATAGAGCTATTAGTACTAAAGATAATTTACGGGACGAATGCTTACTTTGGCCCTATCACCGAGTCGGTGTTCTTTGTGCAAGTAAAGCCATCGACCAACCAAAACTCTATGTGGTGAAAGCCGAAAAGGTTCTAGCAATGAATGAAGAGAGTTTAGGGGTCGTTTGGTGCAAGGTTTTGGAGATGGGAATGGGCAAGGGTTTTGTTAGGCCTCCATTAACAAGGTTTATGCAAGGAGGGGTAAAAAAGGAAATCCCACAGGAAGTTAGTTATGTGGGGGGTCGTGCGGAAGCAAGCAAGGGCTGCTGTGGTCCCAAGAGAGAGTAA

Coding sequence (CDS)

ATGAATTATATCCTTGATCCCATTGTCCTCTCACAAACTCAAGACTCGTGGAAATGGCTTCCTAGCTCTAGTGGCTTCTTCTCCACTAAATCTTTGTTGGTTGATATGGGAAATTCAACCACCTGCTTGGAGACATCTCTGGTTCGGGCTATTTGGAGAGACAAGTATCCAAAAAAGATCAAAATTTTCCTTTGGGAAGTGGCACATAGAGCTATTAGTACTAAAGATAATTTACGGGACGAATGCTTACTTTGGCCCTATCACCGAGTCGGTGTTCTTTGTGCAAGTAAAGCCATCGACCAACCAAAACTCTATGTGGTGAAAGCCGAAAAGGTTCTAGCAATGAATGAAGAGAGTTTAGGGGTCGTTTGGTGCAAGGTTTTGGAGATGGGAATGGGCAAGGGTTTTGTTAGGCCTCCATTAACAAGGTTTATGCAAGGAGGGGTAAAAAAGGAAATCCCACAGGAAGTTAGTTATGTGGGGGGTCGTGCGGAAGCAAGCAAGGGCTGCTGTGGTCCCAAGAGAGAGTAA

Protein sequence

MNYILDPIVLSQTQDSWKWLPSSSGFFSTKSLLVDMGNSTTCLETSLVRAIWRDKYPKKIKIFLWEVAHRAISTKDNLRDECLLWPYHRVGVLCASKAIDQPKLYVVKAEKVLAMNEESLGVVWCKVLEMGMGKGFVRPPLTRFMQGGVKKEIPQEVSYVGGRAEASKGCCGPKRE

Homology

[Close]

BLAST of Lag0007974 vs. NCBI nr
Match: MCH92386.1 (putative non-LTR retroelement reverse transcriptase [Trifolium medium])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-07
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 4   ILDPIVLSQTQDSWKWLPSSSGFFSTKSLLVDM------GNSTTCLETSLVRAIWRDKYP 63
           +LD +VLS  +DSW+W+    G FS KS  V        G + + LETS+ R IW+   P
Sbjct: 124 LLDNVVLSIEEDSWRWVLDPEGCFSVKSSFVMFSREMVEGINLSFLETSIFRKIWKSPAP 183

Query: 64  KKIKIFLWEVAHRAISTKDNL 79
            K+ +F W++ H    TKDNL
Sbjct: 184 SKVVVFSWQLLHNRDPTKDNL 204

[Close]

BLAST of Lag0007974 vs. NCBI nr
Match: GAU38905.1 (hypothetical protein TSUD_119710 [Trifolium subterraneum])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 27/81 (33.33%), Postives = 41/81 (50.62%), Query Frame = 0


Query: 4   ILDPIVLSQTQDSWKWLPSSSGFFSTKSLL------VDMGNSTTCLETSLVRAIWRDKYP 63
           +LD + LS  +D W+W P   G FS  S        +    + + LE  +   IW+   P
Sbjct: 308 LLDSVTLSNEEDGWRWTPDPEGIFSVNSAFGLFSREIGEAPNLSSLEKRIFSFIWKSPAP 367

Query: 64  KKIKIFLWEVAHRAISTKDNL 79
            K+ +F+W++ H  I TKDNL
Sbjct: 368 SKVTVFIWQLLHNRIPTKDNL 388

[Close]

BLAST of Lag0007974 vs. NCBI nr
Match: GAU48842.1 (hypothetical protein TSUD_186170 [Trifolium subterraneum])

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-06
Identity = 32/105 (30.48%), Postives = 51/105 (48.57%), Query Frame = 0


Query: 1   MNYILDPIVLSQTQDSWKWLPSSSGFFSTKSLLVDMGNSTT------CLETSLVRAIWRD 60
           +N ILD   +S T DSW W    SG++S KS  + +  STT        E  L+  +W+ 
Sbjct: 430 LNEILDRSTISTTDDSWYWKHDGSGYYSVKSTFLALSRSTTNEVILSVEEQRLLPKVWKT 489

Query: 61  KYPKKIKIFLWEVAHRAISTKDNLRDECLLWPYHRVGVLCASKAI 100
             P K+ +F W++    + T+ N      LW +  +G + AS  +
Sbjct: 490 WAPSKVAVFSWQLLQDRLPTRQN------LWHWGVIGDVSASMCV 528

[Close]

BLAST of Lag0007974 vs. NCBI nr
Match: GAU29496.1 (hypothetical protein TSUD_360410 [Trifolium subterraneum])

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-05
Identity = 48/146 (32.88%), Postives = 70/146 (47.95%), Query Frame = 0


Query: 4    ILDPIVLSQTQDSWKWLPSSSGFFSTKS---LLVDMGNSTTCLETSLVRA---IWRDKYP 63
            +LDP+VLS  +D W+W P ++G FS  S   LLVD   S   LE + +     IW    P
Sbjct: 1108 LLDPVVLSLEEDWWRWRPETNGVFSVNSSYKLLVDELESEEVLEEAEITVFGQIWDSPAP 1167

Query: 64   KKIKIFLWEVAHRAISTKDNL--RDECLL-WPYHRVGVLCASKAIDQPKLYVVKAEKVLA 123
             K+  F W++ +  I T+ NL  RD  L   P+  VG  C            V++   L 
Sbjct: 1168 SKVIAFSWQLLYDQIPTRKNLEARDMVLADMPWECVG--CVGN---------VESSLHLF 1227

Query: 124  MNEESLGVVWCKVLEMGMGKGFVRPP 141
            ++  S  +VW +V +  +G   V PP
Sbjct: 1228 LHCPSAMLVWYEVFKW-LGLVIVIPP 1241

[Close]

BLAST of Lag0007974 vs. NCBI nr
Match: GAU35033.1 (hypothetical protein TSUD_103560 [Trifolium subterraneum])

HSP 1 Score: 58.5 bits (140), Expect = 6.5e-05
Identity = 36/111 (32.43%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 4   ILDPIVLSQTQDSWKWLPSSSGFFSTKS-------LLVDMGNSTTCLETSLVRAIWRDKY 63
           +L+ ++L+   D+W+W P S+G FS KS       L+ D G  T   + S  + +W+   
Sbjct: 90  VLNGVILTDQDDNWRWKPDSNGIFSVKSTYELVSNLMSDRGRITP-EQASAFKFLWKGLA 149

Query: 64  PKKIKIFLWEVAHRAISTKDNL-RDECLLWPYHRVGVLCASKAIDQPKLYV 107
           P K+  F W + H  I TK NL R   L     +V VLC +       L+V
Sbjct: 150 PSKVLGFAWLLLHDRIPTKVNLFRRRILQQVEDQVCVLCGNCVETSVHLFV 199

The following BLAST results are available for this feature:

BLAST of Lag0007974 vs. NCBI nr


Match Name	E-value	Identity	Description
MCH92386.1	1.1e-07	40.74	putative non-LTR retroelement reverse transcriptase [Trifolium medium]	[more]
GAU38905.1	1.2e-06	33.33	hypothetical protein TSUD_119710 [Trifolium subterraneum]	[more]
GAU48842.1	5.9e-06	30.48	hypothetical protein TSUD_186170 [Trifolium subterraneum]	[more]
GAU29496.1	2.2e-05	32.88	hypothetical protein TSUD_360410 [Trifolium subterraneum]	[more]
GAU35033.1	6.5e-05	32.43	hypothetical protein TSUD_103560 [Trifolium subterraneum]	[more]

BLAST of Lag0007974 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 43..80 e-value: 1.5E-6 score: 28.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007974.1	Lag0007974.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity