Lag0007972 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007972
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr9: 9189421 .. 9189738 (+)
RNA-Seq Expression	Lag0007972
Synteny	Lag0007972

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCCTCTTCGACTACCACTGTCAATCCCTCCTCAATGTCTTCTCCTCTATTTCATTTGTCAAATACATGCAATTTGGTGCCACTTCGCTTGGACTCTACTAATTATGTACTTTGGAAGTTCCAAATCTCTTCCATTCTGAAAGCCCACTCCCTTTTTGGTCATATTGATGATTCTCTTCCCCAACCAAGCAAGTTTGTTCGTTCTTCAACCTGGACAGACACCAATGACATAGACAACACCAACACCAACACCAGCGACACAGACAACACCGACACCACCATTATAGGGATCAGTCCTGATTATCTCTAA

mRNA sequence

ATGGCTTCTTCCTCTTCGACTACCACTGTCAATCCCTCCTCAATGTCTTCTCCTCTATTTCATTTGTCAAATACATGCAATTTGGTGCCACTTCGCTTGGACTCTACTAATTATGTACTTTGGAAGTTCCAAATCTCTTCCATTCTGAAAGCCCACTCCCTTTTTGGTCATATTGATGATTCTCTTCCCCAACCAAGCAAGTTTGTTCGTTCTTCAACCTGGACAGACACCAATGACATAGACAACACCAACACCAACACCAGCGACACAGACAACACCGACACCACCATTATAGGGATCAGTCCTGATTATCTCTAA

Coding sequence (CDS)

ATGGCTTCTTCCTCTTCGACTACCACTGTCAATCCCTCCTCAATGTCTTCTCCTCTATTTCATTTGTCAAATACATGCAATTTGGTGCCACTTCGCTTGGACTCTACTAATTATGTACTTTGGAAGTTCCAAATCTCTTCCATTCTGAAAGCCCACTCCCTTTTTGGTCATATTGATGATTCTCTTCCCCAACCAAGCAAGTTTGTTCGTTCTTCAACCTGGACAGACACCAATGACATAGACAACACCAACACCAACACCAGCGACACAGACAACACCGACACCACCATTATAGGGATCAGTCCTGATTATCTCTAA

Protein sequence

MASSSSTTTVNPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVRSSTWTDTNDIDNTNTNTSDTDNTDTTIIGISPDYL

Homology

[Close]

BLAST of Lag0007972 vs. NCBI nr
Match: TYK08059.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-17
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 11 NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVR 70
          NPS  +S LF LSN CNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K + 
Sbjct: 23 NPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLP 82

Query: 71 SST 74
          SST
Sbjct: 83 SST 85

[Close]

BLAST of Lag0007972 vs. NCBI nr
Match: KAA0048199.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-17
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 11 NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVR 70
          NPS  +S LF LSN CNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K + 
Sbjct: 23 NPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLP 82

Query: 71 SST 74
          SST
Sbjct: 83 SST 85

[Close]

BLAST of Lag0007972 vs. NCBI nr
Match: KAE8649781.1 (hypothetical protein Csa_012983 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 9.9e-17
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 11 NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVR 70
          NPS  +S LF LSN CNLVP+RLDS NYVLWK+Q+SSILKAHSLFGHIDDSLP P K + 
Sbjct: 23 NPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLS 82

Query: 71 SST 74
          SST
Sbjct: 83 SST 85

[Close]

BLAST of Lag0007972 vs. NCBI nr
Match: KAA0061282.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 5.4e-15
Identity = 52/88 (59.09%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 11  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVR 70
           NPS  +S LF LSN CNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K + 
Sbjct: 23  NPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLP 82

Query: 71  SSTWTDTNDIDNTNTNTSDTDNTDTTII 99
           SST    ++I+         D    T+I
Sbjct: 83  SSTLGTNSEINPEYLQWLSRDQALITLI 110

[Close]

BLAST of Lag0007972 vs. NCBI nr
Match: TYK11141.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 7.1e-15
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 11  NPSSMSSPLFHLSNTCNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPQPSKFVR 70
           NPS  +S LF LSN CNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K   
Sbjct: 51  NPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHSP 110

Query: 71  SSTWTDTNDIDNTNTNTSDTDNTDTTII 99
           SST    ++I+         D    T+I
Sbjct: 111 SSTLRTNSEINPEYVQWLSRDQALITLI 138

The following BLAST results are available for this feature:

BLAST of Lag0007972 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK08059.1	2.6e-17	76.19	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048199.1	2.6e-17	76.19	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAE8649781.1	9.9e-17	76.19	hypothetical protein Csa_012983 [Cucumis sativus]	[more]
KAA0061282.1	5.4e-15	59.09	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative m...	[more]
TYK11141.1	7.1e-15	59.09	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0007972 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 27..65 e-value: 1.3E-7 score: 31.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007972.1	Lag0007972.1	mRNA