Lag0007942 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007942
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr9: 8752261 .. 8755493 (+)
RNA-Seq Expression	Lag0007942
Synteny	Lag0007942

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTGGGTATGTGTGCGGAGCATGATGCGGAAATCACATGTGGGTGTGAGTGCGGAGCGTGACGCGAAAATCACGTGTGAGTAGCGTTGTGCATGGCGCATAATTCATGTGTTAGGTGGGTTTGAGGAGCGTGACGCGGAAATCACGTGTGGGATGTGAGTGCGAAGCGTGACGCGAAAATCATGTGTGAGTGTGCGGGCATGGCGCGGAAACCATATGGGGGTGCATAGCATGATGCGTGGATTCATGTTGTCATCCCATTTTTTGCATGAAACATGTGTCAGCATAACTTGTTTTCATAGTTAAGAGTATGTTGATTGTTTTACCGCTTTCAAAGTATGTGTGTGAATAGCATGTTGATGTGGTCGTTTGTTGTGTGTGACTCACCAGGTGTGAGTTACTTACCAGTACGGTGGTTGTACTGATACCCCCCCCCTTCTTCCGCCAACATTTTCAGATTATGCAGGTGATGAGCTTTATGTGTCCGGTGATGTGGATGAGGAGGTTCACGAGGGATGACCATATGGTTTTATTTATTAGTTTGTTTCCTTTCATTCGTTGGATAGGATAGTTCTTTGTTAGTTGATGGTTAGGTTGATTTTAGTATTTTTCTGCTGAGATAAAGAAATCTTTAGTTGTTAAACTTGTAGTAGTTAATGTTTCTGTTAGGTTGTAAATACGTTAAAGATCAATAAAGTTAAGTTGATTCTAGATATTAAGTGCATGTTATACGTAGGATTGTAGCTCTAACATTGATTGTGAATACGAGACCTGACTCGTACTGTGTTGTGAAGTTGAATTCTAATATGTTGAAGTTAGATGGAGTAGTCGGAAATAATATGTAAGTGTTGTTTTATGTCAAACAGGTGTATAAAAAAAATTGGTTTCATCCTATGTATGTCGTTATGCTGCCGAAATTTTCGGAGCTCTCGATTAGATTGAATATAAGAGTTTAGTAGCGTCACTAGGCTAGATAATAATAAAACCTAGGGCGTTACAGATCCACAGTTAATGAATGTTGATTAATGTGGTTAATGAGTTTAGTCAATTAATCTCATATCATTGGAGCTTCTGATTTGTAGGTTCATTAGGTCTCCTTCCTAGCTCGTAAAAGGTATTGAGGTAATTTAATCTTGAATGGAATTTGAAATGTTCAAATTTACTAAAGGAGTTAATATAATGTATGGTGATACATTATATTATAAAGTTTATATTTTAATTAAATTTTATGATATAAATTTAATTTTGGATATGATTCAAAATTAAATTATAAGAAAATTAAATATTTGAAGGAGTTCAAATATTAATTTGAATTGGATTCATATTAAAACTATGGATTAAATTTAATGCGCATTGGATGCACATTAAAACTATAGGTTATGAGAGAAATATATAATTGAATATGATTCAAATGTAGGCTTAAATTAAATATGAGATATTTAATTTGGTAATTAATTATTTATTTTATTTATTTTTATTTGATTTAATTAAATCAATTGAATTAATACCATAGGTTATATAAGAGATAATCATTTAAATATAGTTCAAATGATATAATTAATTAAATTAGATTAATTAATTAATAATTAGATTATTTATTAATTTAATTAACTAAATAAATATATAATTTATTTTTAGTTTTTTAAATTAAAATTAAATTAAAAACTCCCTGCAATTGCTGGGAGTTAGGTGTCACTACTAGAAAATTCATCTCTGCCGACGAAATTTCTCCCGACAAGGAAAATCGCGACGGCCTATACAGTAATTCTGACGCTAGAAAGTAGGCGTCGGGAACGTAAAGAATTCCCCAGCGGTCATTTTTTTACGTCGGCAGTTGGCATAACTCTTGACGCCAACCTTAATAGGCGTCGGGAGTTATGGTAATGGCTGACACTTTGCATACAACATCAGGAGTTTGACTCTCTCCCAACGCTATTATATGGGCGGTAGGAGAGGGTTATTTAAAAGCAACCCTAATTCTTTCTTTCATTCGAAAAATCGCAACCCCTTCGTAAAAAACGCAGCCCCTTCTCTATTCTCACCGTCCGTCTGTCCCTTTTCAGTGCCACCAGTTTCAAATCTCGTTGCTAGCTACAGTGTCGCCACCGTCTGCCAAGCTTGCTGCCATTTTTTAGCTATTTTTCGCCTACTGTAAGTTTTCTTCACTCCTTCTCCTCCAATTCACTTAGCTCTATATAATTGATGCATTTCATGTTAGTGGGGAAGTTACATGTAACTTCCCCCCATCTCTCATCCTCCTAATCGTGAAAGGCAGAAGAGAATGAATATACTCTCTGGCTTTTACACAGTTGATCAATCCAAGATTTCTCTTCTATCTCTTCTCTCTCTTGATTTTCACAGCCATGCATTCTTGGTGAAAATTCTCCCTACTATTCAAGATCTAAGGTTTCCACAAACCTTTCTCTAACACTCAAAGAATAGGAAGGTATCCAAGTGGTGGTGTTCTGTGATTTGTTCCAAAGGTACCTTGTTGTAATTCGTGAGTTTCCAACCAAGGGAGTTTCTCTTGCTGTATTCTGAATCTACAATGAAAGTAAGTGATCTTGATCCCTTTGCTGTAGACTATGCATGCTTAACCTTAGATTAATTACTTAGAATTTGTTCTCTGTAATTTTGCCCAATGTACTGGTATCTTGGAACCTTAATTGAACTACACACGATTCAATTCGCTTCCGCTGGGATTCGATCCTTTCACTATGGACTACTGGGAGTATATGACTAAAATTCTCAACAGTTTAGACACAATCAAAGCAGCCCGTACTATGTGGTCCATACGAGATATCAGGAACAAGGTAAAACACAGTGGAAAACTACCAATTTATTCCCAAATTTTCAAAGATATCCAAGCCAAGCTCAAAGATGAAGATTAAAGGAAATTCTAACCTCTCTTTAGGCAAGACAGAGAACCAACAAAGTCAGTTGCATTGGAGGCCTCGCCAATCAATTGTTGGAAAATCAATTTTGATTCCACGTGGTACGATTCCTCTAAAACAAGAGGGATTGGGTGGGCAATCCGTGACTCCCTGGGTTCTTTGGTCGGAGTTGGTTGCAAAAGAACGAAGAATGTTAGTGAGATTAAATGGCTGGAAGTGTTGGCCATTGTCGAAGGTCTCAATAAGCTTACCAGTAATTTAAGCATCATCAGAGATGGATTCATGTCGCCACTGGTTGTAAAATCGAACTCCAGCGACATCATTAAAGTCAATTAA

mRNA sequence

ATGTGTTGGGTATGTGTGCGGAGCATGATGCGGAAATCACATGTGGGTGTGAGTGCGGAGCGTGACGCGAAAATCACGTGTGAGTTACTTACCAGTACGGTGGTTGTACTGATACCCCCCCCCTTCTTCCGCCAACATTTTCAGATTATGCAGGTGATGAGCTTTATGTGTCCGGTGATGTGGATGAGGAGGATTGTAGCTCTAACATTGATTGTGAATACGAGACCTGACTCGTACTGTGTTGTGAAGTTGAATTCTAATATGTTGAAGTTAGATGGAGTAGTCGGAAATAATATGAGTTTGACTCTCTCCCAACGCTATTATATGGGCGTGCCACCAGTTTCAAATCTCGTTGCTAGCTACAGTGTCGCCACCGTCTGCCAAGCTTGCTGCCATTTTTTAGCTATTTTTCGCCTACTGCAAGACAGAGAACCAACAAAGTCAGTTGCATTGGAGGCCTCGCCAATCAATTGTTGGAAAATCAATTTTGATTCCACGTGGTACGATTCCTCTAAAACAAGAGGGATTGGGTGGGCAATCCGTGACTCCCTGGGTTCTTTGGTCGGAGTTGGTTGCAAAAGAACGAAGAATGTTAGTGAGATTAAATGGCTGGAAGTGTTGGCCATTGTCGAAGGTCTCAATAAGCTTACCAGTAATTTAAGCATCATCAGAGATGGATTCATGTCGCCACTGGTTGTAAAATCGAACTCCAGCGACATCATTAAAGTCAATTAA

Coding sequence (CDS)

ATGTGTTGGGTATGTGTGCGGAGCATGATGCGGAAATCACATGTGGGTGTGAGTGCGGAGCGTGACGCGAAAATCACGTGTGAGTTACTTACCAGTACGGTGGTTGTACTGATACCCCCCCCCTTCTTCCGCCAACATTTTCAGATTATGCAGGTGATGAGCTTTATGTGTCCGGTGATGTGGATGAGGAGGATTGTAGCTCTAACATTGATTGTGAATACGAGACCTGACTCGTACTGTGTTGTGAAGTTGAATTCTAATATGTTGAAGTTAGATGGAGTAGTCGGAAATAATATGAGTTTGACTCTCTCCCAACGCTATTATATGGGCGTGCCACCAGTTTCAAATCTCGTTGCTAGCTACAGTGTCGCCACCGTCTGCCAAGCTTGCTGCCATTTTTTAGCTATTTTTCGCCTACTGCAAGACAGAGAACCAACAAAGTCAGTTGCATTGGAGGCCTCGCCAATCAATTGTTGGAAAATCAATTTTGATTCCACGTGGTACGATTCCTCTAAAACAAGAGGGATTGGGTGGGCAATCCGTGACTCCCTGGGTTCTTTGGTCGGAGTTGGTTGCAAAAGAACGAAGAATGTTAGTGAGATTAAATGGCTGGAAGTGTTGGCCATTGTCGAAGGTCTCAATAAGCTTACCAGTAATTTAAGCATCATCAGAGATGGATTCATGTCGCCACTGGTTGTAAAATCGAACTCCAGCGACATCATTAAAGTCAATTAA

Protein sequence

MCWVCVRSMMRKSHVGVSAERDAKITCELLTSTVVVLIPPPFFRQHFQIMQVMSFMCPVMWMRRIVALTLIVNTRPDSYCVVKLNSNMLKLDGVVGNNMSLTLSQRYYMGVPPVSNLVASYSVATVCQACCHFLAIFRLLQDREPTKSVALEASPINCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEVLAIVEGLNKLTSNLSIIRDGFMSPLVVKSNSSDIIKVN

Homology

[Close]

BLAST of Lag0007942 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-06
Identity = 33/89 (37.08%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 152 EASPINCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEVLAIVE 211
           E  P++ W +N D++W DS+   GIGW IR   G +V  G +  +  + +K LE  AI+E
Sbjct: 72  EPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILE 131

Query: 212 GLNKLTSNLSIIRDGFMSPLVVKSNSSDI 241
           GL  LT NL ++R     PL ++++S+++
Sbjct: 132 GLRNLT-NLGVLR-----PLHIETDSAEV 154

[Close]

BLAST of Lag0007942 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 8.2e-06
Identity = 31/95 (32.63%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 149 VALEASPINCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEVLA 208
           V   A P NCWK+N D++W +  +  GIGW + D  G +V  G  + +   EI  LE++ 
Sbjct: 103 VRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMT 162

Query: 209 IVEGLNKLTSNLSIIRDGFMSPLVVKSNSSDIIKV 244
           I+ G       L  I     SP+ ++S+S ++I++
Sbjct: 163 IIRG-------LQFINMQSRSPIYLESDSVEVIRL 190

[Close]

BLAST of Lag0007942 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-05
Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 157 NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEVLAIVEGLNKL 216
           N WK+N D+ W   + T GIGW +RD  G ++  GC+  +    I +LEV+AI EGL   
Sbjct: 261 NSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLR-- 320

Query: 217 TSNLSIIRDGFMSPLVVKSNSSDII 242
                 IR     P+ ++S+S + I
Sbjct: 321 -----AIRQEHCRPIHLESDSLEAI 338

[Close]

BLAST of Lag0007942 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-05
Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 157 NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEVLAIVEGLNKL 216
           N WK+N D+ W   + T GIGW +RD  G ++  GC+  +    I +LEV+AI EGL   
Sbjct: 226 NSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLR-- 285

Query: 217 TSNLSIIRDGFMSPLVVKSNSSDII 242
                 IR     P+ ++S+S + I
Sbjct: 286 -----AIRQEHCRPIHLESDSLEAI 303

[Close]

BLAST of Lag0007942 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 6.9e-05
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 157 NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEVLAIVEGLNKL 216
           N WK+N D+ W   + T GIGW +RD  G ++   C+  +    I +LEV+AI EGL  +
Sbjct: 85  NSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAI 144

Query: 217 -TSNLSIIRDGFMSPLVVKSNSSDII 242
              +   I+     P+ ++S+S + I
Sbjct: 145 RQEHCRPIQQEHCRPIHLESDSLEAI 170

[Close]

BLAST of Lag0007942 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-06
Identity = 33/89 (37.08%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 152 EASPINCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEVLAIVE 211
           E  P++ W +N D++W DS+   GIGW IR   G +V  G +  +  + +K LE  AI+E
Sbjct: 72  EPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILE 131

Query: 212 GLNKLTSNLSIIRDGFMSPLVVKSNSSDI 241
           GL  LT NL ++R     PL ++++S+++
Sbjct: 132 GLRNLT-NLGVLR-----PLHIETDSAEV 154

[Close]

BLAST of Lag0007942 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-06
Identity = 31/95 (32.63%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 149 VALEASPINCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEVLA 208
           V   A P NCWK+N D++W +  +  GIGW + D  G +V  G  + +   EI  LE++ 
Sbjct: 103 VRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMT 162

Query: 209 IVEGLNKLTSNLSIIRDGFMSPLVVKSNSSDIIKV 244
           I+ G       L  I     SP+ ++S+S ++I++
Sbjct: 163 IIRG-------LQFINMQSRSPIYLESDSVEVIRL 190

[Close]

BLAST of Lag0007942 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.8e-06
Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 157 NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEVLAIVEGLNKL 216
           N WK+N D+ W   + T GIGW +RD  G ++  GC+  +    I +LEV+AI EGL   
Sbjct: 261 NSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLR-- 320

Query: 217 TSNLSIIRDGFMSPLVVKSNSSDII 242
                 IR     P+ ++S+S + I
Sbjct: 321 -----AIRQEHCRPIHLESDSLEAI 338

[Close]

BLAST of Lag0007942 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.8e-06
Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 157 NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEVLAIVEGLNKL 216
           N WK+N D+ W   + T GIGW +RD  G ++  GC+  +    I +LEV+AI EGL   
Sbjct: 226 NSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLR-- 285

Query: 217 TSNLSIIRDGFMSPLVVKSNSSDII 242
                 IR     P+ ++S+S + I
Sbjct: 286 -----AIRQEHCRPIHLESDSLEAI 303

[Close]

BLAST of Lag0007942 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-05
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 157 NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEVLAIVEGLNKL 216
           N WK+N D+ W   + T GIGW +RD  G ++   C+  +    I +LEV+AI EGL  +
Sbjct: 85  NSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAI 144

Query: 217 -TSNLSIIRDGFMSPLVVKSNSSDII 242
              +   I+     P+ ++S+S + I
Sbjct: 145 RQEHCRPIQQEHCRPIHLESDSLEAI 170

The following BLAST results are available for this feature:

BLAST of Lag0007942 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	4.8e-06	37.08	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022143317.1	8.2e-06	32.63	uncharacterized protein LOC111013216 [Momordica charantia]	[more]
XP_022154990.1	1.4e-05	36.47	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]
XP_022154991.1	1.4e-05	36.47	uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]	[more]
XP_022156777.1	6.9e-05	33.72	uncharacterized protein LOC111023608 [Momordica charantia]	[more]

BLAST of Lag0007942 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0007942 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	2.3e-06	37.08	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CQG0	4.0e-06	32.63	uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DL64	6.8e-06	36.47	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DQC9	6.8e-06	36.47	uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DSV1	3.4e-05	33.72	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Lag0007942 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 162..217 e-value: 4.9E-6 score: 26.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007942.1	Lag0007942.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity