Lag0007933 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007933
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	S-protein homolog
Location	chr9: 8515109 .. 8515549 (+)
RNA-Seq Expression	Lag0007933
Synteny	Lag0007933

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTGTGGCTGTTTTGTTGCTTGTCATGATGGCTTTGGTCGGGGCTTCGATACCGATGATCGTGGTACCTCCACTGCCCATTTCTAGGTGGTACATTCATGTGCTTAACGGACTAAGCAACGATGTTGCTTTGTTTGTTCACTGCAAGTCCAAGGACGATGATTTGGGGCCTCAATATTTGGTTCACCATGGAACTGAATTCCAATGGAGCTTTCACGTGAATATTTTGGAAACAACCCTCTTTTGGTGCTTTTTGGAGAAGCCGGGTGCCAGTGTCTCGTTTGAAAGCTTTTGGCCCGAGTCAAATAACTTATGGCTCCGTTATAGGTGCACCAATGGAATTGAAGGAACTTGTATTTGGATAGCCAAAGATGATGGAATTTACTTGAAAAACTTTCCTGCCAAGGTTGATGAGTTGATTCACAAGTGGAAATGA

mRNA sequence

ATGAAGCTTGTGGCTGTTTTGTTGCTTGTCATGATGGCTTTGGTCGGGGCTTCGATACCGATGATCGTGGTACCTCCACTGCCCATTTCTAGGTGGTACATTCATGTGCTTAACGGACTAAGCAACGATGTTGCTTTGTTTGTTCACTGCAAGTCCAAGGACGATGATTTGGGGCCTCAATATTTGGTTCACCATGGAACTGAATTCCAATGGAGCTTTCACGTGAATATTTTGGAAACAACCCTCTTTTGGTGCTTTTTGGAGAAGCCGGGTGCCAGTGTCTCGTTTGAAAGCTTTTGGCCCGAGTCAAATAACTTATGGCTCCGTTATAGGTGCACCAATGGAATTGAAGGAACTTGTATTTGGATAGCCAAAGATGATGGAATTTACTTGAAAAACTTTCCTGCCAAGGTTGATGAGTTGATTCACAAGTGGAAATGA

Coding sequence (CDS)

ATGAAGCTTGTGGCTGTTTTGTTGCTTGTCATGATGGCTTTGGTCGGGGCTTCGATACCGATGATCGTGGTACCTCCACTGCCCATTTCTAGGTGGTACATTCATGTGCTTAACGGACTAAGCAACGATGTTGCTTTGTTTGTTCACTGCAAGTCCAAGGACGATGATTTGGGGCCTCAATATTTGGTTCACCATGGAACTGAATTCCAATGGAGCTTTCACGTGAATATTTTGGAAACAACCCTCTTTTGGTGCTTTTTGGAGAAGCCGGGTGCCAGTGTCTCGTTTGAAAGCTTTTGGCCCGAGTCAAATAACTTATGGCTCCGTTATAGGTGCACCAATGGAATTGAAGGAACTTGTATTTGGATAGCCAAAGATGATGGAATTTACTTGAAAAACTTTCCTGCCAAGGTTGATGAGTTGATTCACAAGTGGAAATGA

Protein sequence

MKLVAVLLLVMMALVGASIPMIVVPPLPISRWYIHVLNGLSNDVALFVHCKSKDDDLGPQYLVHHGTEFQWSFHVNILETTLFWCFLEKPGASVSFESFWPESNNLWLRYRCTNGIEGTCIWIAKDDGIYLKNFPAKVDELIHKWK

Homology

[Close]

BLAST of Lag0007933 vs. NCBI nr
Match: XP_022933268.1 (S-protein homolog 1-like [Cucurbita moschata])

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-47
Identity = 92/145 (63.45%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 1   MKLVAVLLLVMMALVGASIPMIVVPPLPISRWYIHVLNGLSNDVALFVHCKSKDDDLGPQ 60
           +K + V  L  +ALVGA +P + +PPL  SR+YIHV+NGLSN + L VHC+SKDDDLG  
Sbjct: 2   IKNIVVFFLFTVALVGAQVPRVALPPLGPSRYYIHVVNGLSN-LGLLVHCQSKDDDLGYH 61

Query: 61  YLVHHGTEFQWSFHVNILETTLFWCFLEKPGASVSFESFWPESNNLWLRYRCTNGIEGTC 120
           +L++HG ++QW+F VN   TTLFWC +E P A VSFESFWPES +LWLR RC +G  GTC
Sbjct: 62  HLLNHGDDYQWNFKVNFWGTTLFWCKMETPDAYVSFESFWPESQHLWLRDRCKHGTVGTC 121

Query: 121 IWIAKDDGIYLKNFPAKVDELIHKW 146
           IW AKDDGIYL+NF A VDELIHKW
Sbjct: 122 IWTAKDDGIYLRNFLANVDELIHKW 145

[Close]

BLAST of Lag0007933 vs. NCBI nr
Match: XP_022933333.1 (S-protein homolog 1-like [Cucurbita moschata])

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-46
Identity = 91/145 (62.76%), Postives = 110/145 (75.86%), Query Frame = 0


Query: 1   MKLVAVLLLVMMALVGASIPMIVVPPLPISRWYIHVLNGLSNDVALFVHCKSKDDDLGPQ 60
           +K + V  L  +ALVGA +P + +PP   SR+YIHV+NGLS  + L VHC+SKDDDLG  
Sbjct: 2   IKNIVVFFLFTVALVGAQVPRVALPPPGPSRYYIHVVNGLSK-LGLLVHCQSKDDDLGYH 61

Query: 61  YLVHHGTEFQWSFHVNILETTLFWCFLEKPGASVSFESFWPESNNLWLRYRCTNGIEGTC 120
           +L++HG ++QW+F VN   TTLFWC LE P A VSFESFWPES +LWLR RC +G  GTC
Sbjct: 62  HLLNHGDDYQWNFKVNFWGTTLFWCKLETPDAYVSFESFWPESQHLWLRDRCKHGTVGTC 121

Query: 121 IWIAKDDGIYLKNFPAKVDELIHKW 146
           IW AKDDGIYL+NF A VDELIHKW
Sbjct: 122 IWTAKDDGIYLRNFLANVDELIHKW 145

[Close]

BLAST of Lag0007933 vs. NCBI nr
Match: XP_022974044.1 (S-protein homolog 1-like [Cucurbita maxima])

HSP 1 Score: 195.3 bits (495), Expect = 3.7e-46
Identity = 92/145 (63.45%), Postives = 110/145 (75.86%), Query Frame = 0


Query: 1   MKLVAVLLLVMMALVGASIPMIVVPPLPISRWYIHVLNGLSNDVALFVHCKSKDDDLGPQ 60
           +K + V  L  +ALVGA +P I +PP   SR+YIHV+NGLS  + L VHC+SKDDDLG  
Sbjct: 2   IKNIVVFFLFTVALVGAEVPRITLPPPGPSRYYIHVVNGLSK-LGLLVHCQSKDDDLGYH 61

Query: 61  YLVHHGTEFQWSFHVNILETTLFWCFLEKPGASVSFESFWPESNNLWLRYRCTNGIEGTC 120
            L++HG E+QW+F VN   TTL+WC LE P ASVSFESFWPE+ +LWLR RC +G  GTC
Sbjct: 62  RLLNHGDEYQWNFKVNFWGTTLYWCKLETPHASVSFESFWPETQHLWLRDRCKHGTVGTC 121

Query: 121 IWIAKDDGIYLKNFPAKVDELIHKW 146
           IW AKDDGIYL+NF A VDELIHKW
Sbjct: 122 IWTAKDDGIYLRNFLANVDELIHKW 145

[Close]

BLAST of Lag0007933 vs. NCBI nr
Match: XP_022974619.1 (S-protein homolog 1-like [Cucurbita maxima])

HSP 1 Score: 194.9 bits (494), Expect = 4.9e-46
Identity = 91/145 (62.76%), Postives = 110/145 (75.86%), Query Frame = 0


Query: 1   MKLVAVLLLVMMALVGASIPMIVVPPLPISRWYIHVLNGLSNDVALFVHCKSKDDDLGPQ 60
           +K + V  L  +ALVGA +P + +PP   SR+YIHV+NGLS  + L VHC+SKDDDLG  
Sbjct: 2   IKNIVVFFLFTVALVGAEVPRVALPPPGPSRYYIHVVNGLSK-LGLLVHCQSKDDDLGYH 61

Query: 61  YLVHHGTEFQWSFHVNILETTLFWCFLEKPGASVSFESFWPESNNLWLRYRCTNGIEGTC 120
            L++HG E+QW+F VN   TTL+WC LE P ASVSFESFWPE+ +LWLR RC +G  GTC
Sbjct: 62  RLLNHGDEYQWNFKVNFWGTTLYWCKLETPHASVSFESFWPETQHLWLRDRCKHGTVGTC 121

Query: 121 IWIAKDDGIYLKNFPAKVDELIHKW 146
           IW AKDDGIYL+NF A VDELIHKW
Sbjct: 122 IWTAKDDGIYLRNFLANVDELIHKW 145

[Close]

BLAST of Lag0007933 vs. NCBI nr
Match: XP_022991767.1 (S-protein homolog 74-like [Cucurbita maxima])

HSP 1 Score: 194.1 bits (492), Expect = 8.3e-46
Identity = 93/145 (64.14%), Postives = 110/145 (75.86%), Query Frame = 0


Query: 1   MKLVAVLLLVMMALVGASIPMIVVPPLPISRWYIHVLNGLSNDVALFVHCKSKDDDLGPQ 60
           +K V VLLL M+A VGA +P I+  P P SR+Y+HV NGLS  + L VHC+SKDDDLG  
Sbjct: 2   IKNVVVLLLGMVAFVGAQVPGIIYQPKP-SRYYVHVANGLST-LPLTVHCQSKDDDLGIH 61

Query: 61  YLVHHGTEFQWSFHVNILETTLFWCFLEKPGASVSFESFWPESNNLWLRYRCTNGIEGTC 120
           +L + G +FQW+F VN   TTLFWC LE+P A V+FE+FWPES N WLR RC NG +GTC
Sbjct: 62  HLPNRGDDFQWNFKVNFWGTTLFWCRLERPDAYVTFETFWPESKNTWLRDRCRNGTQGTC 121

Query: 121 IWIAKDDGIYLKNFPAKVDELIHKW 146
           +WIAKDDGIYL NFPA  DELIHKW
Sbjct: 122 LWIAKDDGIYLFNFPANNDELIHKW 144

[Close]

BLAST of Lag0007933 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.3e-21
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = 0


Query: 14  LVGASIPMIVVPPLPISRWYIHVLNGLSNDVALFVHCKSKDDDLGPQYLVHHGTEFQWSF 73
           LVG +    ++ P  IS W + V+NGL+    LF+HCKSK+DDLG +  +     F W+F
Sbjct: 24  LVGGTTTRDIIVP-KISEWQVTVVNGLTTGETLFIHCKSKEDDLG-EINLKFRNRFSWNF 83

Query: 74  HVNILETTLFWCFLEKPGASVSFESFWPESNNLWLRYRCTNGIEGTCIWIAKDDGIYLKN 133
             N+L +T FWC++ K    ++   FW   +++ L +RC       CIW AK DG+YL N
Sbjct: 84  GENMLHSTFFWCYMNKDNGHMNVNVFW---DDVILFHRCG---WKNCIWTAKTDGLYLWN 143

Query: 134 FPAKVDELIHKWK 147
             +  D L  KW+
Sbjct: 144 SASGEDVLSRKWE 148

[Close]

BLAST of Lag0007933 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-20
Identity = 52/125 (41.60%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 22  IVVPPLPISRWYIHVLNGLSNDVALFVHCKSKDDDLGPQYLVHHGTEFQWSFHVNILETT 81
           IVVP   IS W + V NGL+    LF+HCKSK++DLG   L      F W+F  N+L +T
Sbjct: 33  IVVP--KISEWQVTVANGLTTGETLFIHCKSKENDLGDINL-KFLDRFSWNFGENMLHST 92

Query: 82  LFWCFLEKPGASVSFESFWPESNNLWLRYRCTNGIEGTCIWIAKDDGIYLKNFPAKVDEL 141
           LFWC++ K    ++ + FW   +++ L +RC       C+W AK+DG+YL N     D L
Sbjct: 93  LFWCYMSKDDGHMNVKVFW---DDVILFHRCD---WKNCVWTAKNDGLYLWNSAIGEDVL 148

Query: 142 IHKWK 147
             KWK
Sbjct: 153 SEKWK 148

[Close]

BLAST of Lag0007933 vs. ExPASy Swiss-Prot
Match: Q9FI84 (S-protein homolog 27 OS=Arabidopsis thaliana OX=3702 GN=SPH27 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-10
Identity = 42/116 (36.21%), Postives = 55/116 (47.41%), Query Frame = 0


Query: 26  PLPISRWYIHVLNGLSNDVALFVHCKSKDDDLGPQYLVH-HGTEFQWSFHVNILETTLFW 85
           P PI      +    +ND  L +HCKSKDDDLG  + +H  G  + W FHVN   +TL++
Sbjct: 39  PFPIRGPLTRITVKNNNDYLLGIHCKSKDDDLG--FHIHKEGELYGWKFHVNFQNSTLYF 98

Query: 86  C-FLEKPGASVSFESFWPESNNLWLRYRCTNGIEGTCIWIAKDDGIY-LKNFPAKV 139
           C F +       F+    E +     YRC N     C W AK D +Y   N P  V
Sbjct: 99  CGFSQGQDNKGVFDIDRAERD----FYRCRN-----CTWNAKKDSLYGYSNLPQTV 143

[Close]

BLAST of Lag0007933 vs. ExPASy Swiss-Prot
Match: F2Q9V4 (S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09
Identity = 42/141 (29.79%), Postives = 70/141 (49.65%), Query Frame = 0


Query: 6   VLLLVMMALVGASIPMIVVPPLPISRWYIHVLNGLSNDVALFVHCKSKDDDLGPQYLVHH 65
           ++ +V+++L+G           P+      V+    ND  L VHCKS+DDD G  +++  
Sbjct: 4   IIFIVLISLIGCETLQHDGKVFPMKGPLTRVVIYNDNDYLLGVHCKSRDDDHG-FHILQK 63

Query: 66  GTEFQWSFHVNILETTLFWC-FLEKPGASVSFESFWPESNNLWLRYRCTNGIEGTCIWIA 125
           G  + W F+VN + +TL++C F ++      F+ +    ++     RC N     C W A
Sbjct: 64  GGLYGWMFYVNFMNSTLYFCGFSQEQVKKGVFDIYKAVRDS----SRCRN-----CTWEA 123

Query: 126 KDDGIYLKNFPAKVDELIHKW 146
           K+DGIY      K + L +KW
Sbjct: 124 KEDGIYGYGEIPKKNPLFYKW 134

[Close]

BLAST of Lag0007933 vs. ExPASy Swiss-Prot
Match: Q9FMQ4 (S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-09
Identity = 31/98 (31.63%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 34  IHVLNGLSNDVALFVHCKSKDDDLGPQYLVHHGTEFQWSFHVNILETTLFWCFLEKPGAS 93
           + + N L + + L +HCKS DDDLG + L  +G+ + + F  +I+ TTLF+C    PG S
Sbjct: 39  VRITNRLGDGLTLNLHCKSADDDLGLKILAPNGS-WSFKFRTSIVGTTLFYCHFTWPGQS 98

Query: 94  VSFESFWPESNNLWLRYRCTN-----GIEGTCIWIAKD 127
             F+ +  + + +     C N      I+G C++   D
Sbjct: 99  KRFDIYDDDRDGVRSHISCINCIWDISIQGPCMFSESD 135

The following BLAST results are available for this feature:

BLAST of Lag0007933 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933268.1	1.5e-47	63.45	S-protein homolog 1-like [Cucurbita moschata]	[more]
XP_022933333.1	2.8e-46	62.76	S-protein homolog 1-like [Cucurbita moschata]	[more]
XP_022974044.1	3.7e-46	63.45	S-protein homolog 1-like [Cucurbita maxima]	[more]
XP_022974619.1	4.9e-46	62.76	S-protein homolog 1-like [Cucurbita maxima]	[more]
XP_022991767.1	8.3e-46	64.14	S-protein homolog 74-like [Cucurbita maxima]	[more]

BLAST of Lag0007933 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JLS0	7.3e-21	38.35	S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1	[more]
Q2HQ46	1.3e-20	41.60	S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1	[more]
Q9FI84	7.6e-10	36.21	S-protein homolog 27 OS=Arabidopsis thaliana OX=3702 GN=SPH27 PE=2 SV=1	[more]
F2Q9V4	2.2e-09	29.79	S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2	[more]
Q9FMQ4	2.9e-09	31.63	S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 34..145 e-value: 2.8E-24 score: 85.6
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 24..138
None	No IPR available	PANTHER	PTHR31232:SF34	PUTATIVE-RELATED	coord: 24..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007933.1	Lag0007933.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060320	rejection of self pollen
cellular_component	GO:0005576	extracellular region