Lag0007912 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007912
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag/pol protein
Location	chr9: 7907370 .. 7907678 (+)
RNA-Seq Expression	Lag0007912
Synteny	Lag0007912

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAAATACAATTCAACCTGACCACCCTCCTCAATGAGCAACAGATTTACGAGTCCATGCTGAAAAGCAAGGGCAAGAATGTGGTAAAAGAAGAGGCCAATGTGGCCCATTCCAAGAAGAAGTTTCTGAAGGGTTCATCCTCAGGAACTAAATCTGTACCTCAAACTTCTTCATCGAAGCAAATCCAAAAAAGGAAGGGTGACAAGGGGAAGGCTCCTGCTCAGGCTGTTCAGGGAAAGGAAAGGCCAAGGTCGTGTCTGACAAGGACAAGTGCTTCCATTGCAATGTGGATGGTCACTGCATGA

mRNA sequence

ATGAAAAAAATACAATTCAACCTGACCACCCTCCTCAATGAGCAACAGATTTACGAGTCCATGCTGAAAAGCAAGGGCAAGAATGTGGTAAAAGAAGAGGCCAATGTGGCCCATTCCAAGAAGAAGTTTCTGAAGGGTTCATCCTCAGGAACTAAATCTGTACCTCAAACTTCTTCATCGAAGCAAATCCAAAAAAGGAAGGGTGACAAGGGGAAGGCTCCTGCTCAGGCTGTTCAGGGAAAGGAAAGGCCAAGGTCGTGTCTGACAAGGACAAGTGCTTCCATTGCAATGTGGATGGTCACTGCATGA

Coding sequence (CDS)

ATGAAAAAAATACAATTCAACCTGACCACCCTCCTCAATGAGCAACAGATTTACGAGTCCATGCTGAAAAGCAAGGGCAAGAATGTGGTAAAAGAAGAGGCCAATGTGGCCCATTCCAAGAAGAAGTTTCTGAAGGGTTCATCCTCAGGAACTAAATCTGTACCTCAAACTTCTTCATCGAAGCAAATCCAAAAAAGGAAGGGTGACAAGGGGAAGGCTCCTGCTCAGGCTGTTCAGGGAAAGGAAAGGCCAAGGTCGTGTCTGACAAGGACAAGTGCTTCCATTGCAATGTGGATGGTCACTGCATGA

Protein sequence

MKKIQFNLTTLLNEQQIYESMLKSKGKNVVKEEANVAHSKKKFLKGSSSGTKSVPQTSSSKQIQKRKGDKGKAPAQAVQGKERPRSCLTRTSASIAMWMVTA

Homology

[Close]

BLAST of Lag0007912 vs. NCBI nr
Match: XP_038874988.1 (uncharacterized protein LOC120067510 [Benincasa hispida])

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-11
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 1   MKKIQFNLTTLLNEQQIYESMLKSKGKNVVKEEANVAHSKKKFLKGSSSGTKSVPQTSSS 60
           MKK QFNLT          S+LK+KGK  ++ EA+VAHSK+KF KG SSGTK+V Q+S+S
Sbjct: 90  MKKTQFNLT----------SLLKNKGK--IEREASVAHSKRKFEKGLSSGTKAVSQSSTS 149

Query: 61  KQIQKRKGDKGKAPAQAVQGKERPR 86
           K+IQK KG+KGKAPA A +GK + +
Sbjct: 150 KKIQKNKGNKGKAPAAAAKGKGKTK 162

[Close]

BLAST of Lag0007912 vs. NCBI nr
Match: KAA0058447.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.7e-08
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 1   MKKIQFNLTTLLNEQQIYESMLKSKGKNVVKEEANVAHSKKKFLKGSSSGTKSVPQTSSS 60
           M KI + LTTLLNE Q +ES++K KG+   K EANVA S +KF KGS+SGTKS+P +S +
Sbjct: 88  MNKIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHKGSTSGTKSMPSSSGN 147

Query: 61  KQIQKRKGDKG 72
           K+++K+KG +G
Sbjct: 148 KKLKKKKGGQG 155

[Close]

BLAST of Lag0007912 vs. NCBI nr
Match: KAA0032020.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 1   MKKIQFNLTTLLNEQQIYESMLKSKGKNVVKEEANVAHSKKKFLKGSSSGTKSVPQTSSS 60
           M KI + LTTLLNE Q +ES++K KG+   K EANVA S +KF +GS+SGTKS+P +S S
Sbjct: 175 MNKIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGS 234

Query: 61  KQIQKRKGDKG 72
           K+ +K+KG +G
Sbjct: 235 KKWKKKKGGQG 242

[Close]

BLAST of Lag0007912 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-07
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 1   MKKIQFNLTTLLNEQQIYESMLKSKGKNVVKEEANVAHSKKKFLKGSSSGTKSVPQTSSS 60
           M KI + LTTLLNE Q +ES++K KG+   K EANVA S +KF +GS+SGTKS+P +S +
Sbjct: 175 MNKIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGN 234

Query: 61  KQIQKRKGDKG 72
           K+ +K+KG +G
Sbjct: 235 KKWKKKKGGQG 242

[Close]

BLAST of Lag0007912 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-07
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 1   MKKIQFNLTTLLNEQQIYESMLKSKGKNVVKEEANVAHSKKKFLKGSSSGTKSVPQTSSS 60
           M KI + LTTLLNE Q +ES++K KG+   K EANVA S +KF +GS+SGTKS+P +S +
Sbjct: 174 MNKIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGN 233

Query: 61  KQIQKRKGDKG 72
           K+ +K+KG +G
Sbjct: 234 KKWKKKKGGQG 241

The following BLAST results are available for this feature:

BLAST of Lag0007912 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874988.1	6.0e-11	57.65	uncharacterized protein LOC120067510 [Benincasa hispida]	[more]
KAA0058447.1	3.7e-08	56.34	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0032020.1	1.4e-07	56.34	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	3.1e-07	54.93	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	3.1e-07	54.93	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0007912 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007912.1	Lag0007912.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding