Lag0007900 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0007900
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRoot meristem growth factor 9-like protein
Locationchr9: 7579796 .. 7580860 (-)
RNA-Seq ExpressionLag0007900
SyntenyLag0007900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTTCTTCCATGCAAACGCATCTTCATCCTCATCCTCGTCCTCGTCCTTCTTTGTTGTTTCTCAAACACAGCTAGAGGTATATATTATTCTATCTGATGTTTCTTCTTCTCATTCATTTGTTTTTGGAGTTATGGTTAACCGACATGTTTATTATAATTGATTATGATAGATTGGATCGGTTTTAGAATTAGGTTAACTCTAACCGACATGTGTTTATTATATTGTGTGTTTTTCTCTTTATCTTTTTTTTGGGGTGTTCAAAATATGATTTAAGTTTTACACATTTTTATTTTTGGCAATATCTCATTATATTTCTTTTTTTTTTTAGTGTTATACTTTTTAATTTATCCATTATAATGAATAAAGATAGGAGTTTTTAAATTTCTCTGGTGCAATATCTTGAATTGTACATGTAAAAGCTAGATGCATACATATATTATATTGTAGAATTTGAAAGGTGTATGCCAAACATAGATATAACAACATATAGTTAAAAAAAAAATAGATATAAGAACCTATATGTTTCTTGATATATTTTTGTAAGTTTAATGAAACCATGTAAGTATCTTTTTTTTATGGAAAAAAAAATCTTATTTTTGTATTTATTTATTTATAATATCAATTTTATTATTTTATAATCCACTTTCTGATATCTTACTGCAAAAGAAAATTCTCTTAAAAAACTCAACTCTTATGGCATTCTTTTCTTCCATAAAAAGCCACAGAAAAACTTTAATAAGTTCAATTCTGGATCAAATCATTGAGAAAGAAAAAAAAAAAGAAAAAAACTCACTCTACGAAGTTCTCTTCCTTCTCTTTCGAAAACCCGAATTTTATGTACAAAGTTCGAATTGGATCGCTGATCGAGATTTCGCCATTGATTTGTATTTTGCAGCAGCAAGAGGTTTGGGAGTGCCTCAGATTGAGAATGATGATCGCAATAATCCGAAAGTACACGATGATCTTAAAGTTCATGATGAAGAACATTTTTCAAGCTCTGATGATTTGGTGGCTATGGATTACACTCCAGCGTCCAAGAAGCCTCCAATCCACAACTGA

mRNA sequence

ATGGCCCTTCTTCCATGCAAACGCATCTTCATCCTCATCCTCGTCCTCGTCCTTCTTTGTTGTTTCTCAAACACAGCTAGAGCAGCAAGAGGTTTGGGAGTGCCTCAGATTGAGAATGATGATCGCAATAATCCGAAAGTACACGATGATCTTAAAGTTCATGATGAAGAACATTTTTCAAGCTCTGATGATTTGGTGGCTATGGATTACACTCCAGCGTCCAAGAAGCCTCCAATCCACAACTGA

Coding sequence (CDS)

ATGGCCCTTCTTCCATGCAAACGCATCTTCATCCTCATCCTCGTCCTCGTCCTTCTTTGTTGTTTCTCAAACACAGCTAGAGCAGCAAGAGGTTTGGGAGTGCCTCAGATTGAGAATGATGATCGCAATAATCCGAAAGTACACGATGATCTTAAAGTTCATGATGAAGAACATTTTTCAAGCTCTGATGATTTGGTGGCTATGGATTACACTCCAGCGTCCAAGAAGCCTCCAATCCACAACTGA

Protein sequence

MALLPCKRIFILILVLVLLCCFSNTARAARGLGVPQIENDDRNNPKVHDDLKVHDEEHFSSSDDLVAMDYTPASKKPPIHN
Homology
BLAST of Lag0007900 vs. NCBI nr
Match: KAG6571377.1 (hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 0

Query: 11 ILILVLVLLCCFSNTARAARGLGVPQIENDDRNNPKVHDDLKVHDEEHFSSSDDLVAMDY 70
          +L+LVLVLLC FSN   A R LGVPQI+ DD +  K +DDL VH+EEHFSS+DDL AMDY
Sbjct: 7  VLVLVLVLLCSFSNKVIATRSLGVPQIKKDD-HKLKGNDDLAVHEEEHFSSTDDLGAMDY 66

Query: 71 TPASKKPPIHN 82
          TPASKKPPIHN
Sbjct: 67 TPASKKPPIHN 76

BLAST of Lag0007900 vs. NCBI nr
Match: KGN62102.1 (hypothetical protein Csa_006036 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-16
Identity = 56/88 (63.64%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 1  MALLPCKRIFIL-ILVLVLLCCFSNTARAARGLGVPQIENDDRNNPKVH---DDLKVH-- 60
          MA+LPCKRI  L +L+LVLLCCFSN A AAR +GV +++N+ +N   ++   D  KVH  
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEH-FSSSDDLVAMDYTPASKKPPIHN 82
          DEEH FSS+DDL AMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

BLAST of Lag0007900 vs. NCBI nr
Match: KAA0045905.1 (Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684.1 hypothetical protein E5676_scaffold299G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 58/90 (64.44%), Postives = 70/90 (77.78%), Query Frame = 0

Query: 1  MALLPCKRIFIL-ILVLVLLCCFSNTARAARGLGVPQIENDDRNNPKV---HDDL-KVH- 60
          MA+LPCKRI IL +L+L+LL CFSNTA AAR +GV +++N+     KV   +DD+ KVH 
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 --DEEH-FSSSDDLVAMDYTPASKKPPIHN 82
            DEEH FSS+DDL AMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

BLAST of Lag0007900 vs. NCBI nr
Match: KAG6605281.1 (hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 7.2e-15
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 0

Query: 3  LLPCKR-IFILILVLVLLCCFSNTARAAR--GLGVPQIENDDRNNPKVHDDLKVHDEEHF 62
          + PCKR + +L+++LVLL CFSNTA  AR  G+GVPQI+ DD ++ KV  DL V DEEHF
Sbjct: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDD-HSLKVDGDLNVDDEEHF 60

Query: 63 SSSDDLVAMDYTPASKKPPIHN 82
           S+ DLVAMDYT ASKKPPIHN
Sbjct: 61 MSTVDLVAMDYTQASKKPPIHN 81

BLAST of Lag0007900 vs. NCBI nr
Match: KAB1210353.1 (hypothetical protein CJ030_MR6G024140 [Morella rubra])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 2  ALLPCKRIFILILVLVLLCCFSNTARAARGLGVPQIENDDRNNPKVHDDLKVHDEEHFSS 61
          A+LPCKR  ++++ LV+LC FSN ARAAR L      N+        D     ++   + 
Sbjct: 4  AVLPCKR--LVLIALVMLCFFSNAARAARSLRA-VASNEISQMSHDQDPFSPKEDRVLAD 63

Query: 62 SDDLVAMDYTPASKKPPIHN 82
          SDDLV +DYTPA +KPPIHN
Sbjct: 64 SDDLVTVDYTPARRKPPIHN 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571377.11.0e-1671.83hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN62102.12.2e-1663.64hypothetical protein Csa_006036 [Cucumis sativus][more]
KAA0045905.11.4e-1564.44Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684... [more]
KAG6605281.17.2e-1564.63hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAB1210353.11.6e-0646.25hypothetical protein CJ030_MR6G024140 [Morella rubra][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..81
NoneNo IPR availablePANTHERPTHR33743:SF16ROOT MERISTEM GROWTH FACTOR 9coord: 1..81
IPR039337Protein GOLVEN 2PANTHERPTHR33743FAMILY NOT NAMEDcoord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0007900.1Lag0007900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008083 growth factor activity