Lag0007887 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0007887
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description1-deoxy-D-xylulose 5-phosphate synthase family protein
Locationchr9: 7329808 .. 7330269 (-)
RNA-Seq ExpressionLag0007887
SyntenyLag0007887
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACCACCCACGACAACACAAGGTCAGTAGAGAAGGTCATGCTTCTCTACAACATAATGAAGGGGATGAAAATTAATATTGGGAGCATCATTAGAGAGGAGATTCTATCATATGGAAAAAAGAGAGTGGGGAAGCTATTCTTTGGGTCCCTCATAATCCAACTATGTCAGAGAGTCAAGATTGTTTCTAGAAAGGACGAGGAGTGGAATTTTTACAAGTCTACCATTGACTTGCCTCTGATAGGGAAGCTACAACAGAACAATGCACAAAGAAAAGATAAAGCTTCTACCTCCCAAGCTATTCCTTCTCTGGGGCTGACACCTGCTTCACCTCTATCACATACTCCTGTTTCAAGGCCTACACCATCATCCGAGGGCCTTGCATTTGCTTACCACCAGCTAGACCGCATTGAGGATACATTGAAAACTTATTGGGTCTACGTAAAGGAGAGGGATTAA

mRNA sequence

ATGCCCACCACCCACGACAACACAAGGTCAGTAGAGAAGGTCATGCTTCTCTACAACATAATGAAGGGGATGAAAATTAATATTGGGAGCATCATTAGAGAGGAGATTCTATCATATGGAAAAAAGAGAGTGGGGAAGCTATTCTTTGGGTCCCTCATAATCCAACTATGTCAGAGAGTCAAGATTGTTTCTAGAAAGGACGAGGAGTGGAATTTTTACAAGTCTACCATTGACTTGCCTCTGATAGGGAAGCTACAACAGAACAATGCACAAAGAAAAGATAAAGCTTCTACCTCCCAAGCTATTCCTTCTCTGGGGCTGACACCTGCTTCACCTCTATCACATACTCCTGTTTCAAGGCCTACACCATCATCCGAGGGCCTTGCATTTGCTTACCACCAGCTAGACCGCATTGAGGATACATTGAAAACTTATTGGGTCTACGTAAAGGAGAGGGATTAA

Coding sequence (CDS)

ATGCCCACCACCCACGACAACACAAGGTCAGTAGAGAAGGTCATGCTTCTCTACAACATAATGAAGGGGATGAAAATTAATATTGGGAGCATCATTAGAGAGGAGATTCTATCATATGGAAAAAAGAGAGTGGGGAAGCTATTCTTTGGGTCCCTCATAATCCAACTATGTCAGAGAGTCAAGATTGTTTCTAGAAAGGACGAGGAGTGGAATTTTTACAAGTCTACCATTGACTTGCCTCTGATAGGGAAGCTACAACAGAACAATGCACAAAGAAAAGATAAAGCTTCTACCTCCCAAGCTATTCCTTCTCTGGGGCTGACACCTGCTTCACCTCTATCACATACTCCTGTTTCAAGGCCTACACCATCATCCGAGGGCCTTGCATTTGCTTACCACCAGCTAGACCGCATTGAGGATACATTGAAAACTTATTGGGTCTACGTAAAGGAGAGGGATTAA

Protein sequence

MPTTHDNTRSVEKVMLLYNIMKGMKINIGSIIREEILSYGKKRVGKLFFGSLIIQLCQRVKIVSRKDEEWNFYKSTIDLPLIGKLQQNNAQRKDKASTSQAIPSLGLTPASPLSHTPVSRPTPSSEGLAFAYHQLDRIEDTLKTYWVYVKERD
Homology
BLAST of Lag0007887 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-09
Identity = 38/112 (33.93%), Postives = 66/112 (58.93%), Query Frame = 0

Query: 2   PTTHDNTRSVEKVMLLYNIMKGMKINIGSIIREEILSYGKKRVGKLFFGSLIIQLCQRV- 61
           PTTHD++ SVEK++LLY ++ G  IN+G ++ + IL   K+R GKLFF SLI +L  +  
Sbjct: 350 PTTHDSSISVEKIILLYCVVTGRTINVGKVVEKAILYCSKRRQGKLFFPSLIHKLLMQAG 409

Query: 62  -------KIVSRKDEEWNFYKSTIDLPLIGKLQQNNAQRKDKASTSQAIPSL 106
                   ++   +E+W     TID+  + KL++ + + ++    ++A+  L
Sbjct: 410 VPEYTDDLVIKECEEKW-----TIDMKAVSKLRERSERGRELPGVTRAMEEL 456

BLAST of Lag0007887 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 0

Query: 1   MPTTHDNTRSVEKVMLLYNIMKGMKINIGSIIREEILSYGKKRVGKLFFGSLIIQLCQRV 60
           +PTTH  T S ++++LLY+++ G  IN+G +I  EI +   ++ G LFF SLI QLC+  
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  KIVSRKDEEWNFYKSTIDLPLIGKL-QQNNAQRKDKASTSQAIPSLGLTPASPLSHTPVS 120
           +     +EE       ID   + ++ Q+   +   + STS+   +        +     +
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKA 176

Query: 121 RPTPSSEGLAFAYHQLDRIEDTLK---TYWVYVKERD 154
                S+     YH +  ++ T K    +W Y KERD
Sbjct: 177 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERD 213

BLAST of Lag0007887 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-08
Identity = 47/161 (29.19%), Postives = 79/161 (49.07%), Query Frame = 0

Query: 1   MPTTHDNTRSVEKVMLLYNIMKGMKINIGSIIREEILSYGKKRVGKLFFGSLIIQLCQRV 60
           +PTTH  T S ++++LL++++ G  IN+G +I  EI +   ++ G LFF SLI +LC+  
Sbjct: 186 LPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNA 245

Query: 61  KIVSRKDEEWNFYKSTIDLPLIGKLQQNNAQRKDKASTSQAIPSLGLTPASPLSHTPVSR 120
           +     +EE       ID   + ++    AQ     ST Q   S   T +S  ++  + +
Sbjct: 246 RAPFLVNEEKLHNTGEIDAIAVARI----AQEGPTESTQQPSSSRPATASSNRTNGDILQ 305

Query: 121 PTPS-----SEGLAFAYHQLDRIEDTLK---TYWVYVKERD 154
              +     S+     YH +  ++ T K    +W Y KERD
Sbjct: 306 QLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERD 342

BLAST of Lag0007887 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 67.8 bits (164), Expect = 9.4e-08
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 0

Query: 1   MPTTHDNTRSVEKVMLLYNIMKGMKINIGSIIREEILSYGKKRVGKLFFGSLIIQLCQRV 60
           +PTTH  T S E+V+LLY+++ G  IN+G II  EI +Y  ++ G LFF SLI ++C   
Sbjct: 93  LPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHREICAYAARKSGALFFPSLITRMCCNA 152

Query: 61  KIVSRKDEEWNFYKSTIDLPLIGKL-QQNNAQRKDKASTSQ 101
           +     +EE       ID   + ++ Q+  A+   + S+S+
Sbjct: 153 RAPYLVNEEKLHNTGEIDAIAVARIAQEGPAEHSHRPSSSR 193

BLAST of Lag0007887 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-07
Identity = 45/153 (29.41%), Postives = 73/153 (47.71%), Query Frame = 0

Query: 1    MPTTHDNTRSVEKVMLLYNIMKGMKINIGSIIREEILSYGKKRVGKLFFGSLIIQLCQRV 60
            +PT+HD+T S E++ +LY I+KG KIN+G +I +EI     +  GKLFF  LI + C+  
Sbjct: 886  LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61   KIVSRKDEEWNFYKSTIDLPLIGKLQQNNAQRKDKASTSQAIPSLGLTPASPLSHTPVSR 120
             +    DE+    K  +        + + A ++   ST+ A            S  P+  
Sbjct: 946  NVPMLNDEDPVPRKGVV------SFEPDRAPKRTTPSTTTA----------STSRDPMDE 1005

Query: 121  PTPSSEGLAFAYHQLDRIEDTLKTYWVYVKERD 154
                 E L        ++ + L+T+W Y +ERD
Sbjct: 1006 RLSKHEALQ------QQMCERLQTHWNYERERD 1016

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024971944.16.5e-0933.93uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus][more]
PON59596.11.4e-0828.66hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
PON46472.17.2e-0829.19hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON62892.19.4e-0835.64hypothetical protein PanWU01x14_135680 [Parasponia andersonii][more]
KAF4375842.12.7e-0729.41hypothetical protein G4B88_026421 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0007887.1Lag0007887.1mRNA