Lag0007776 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007776
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)
Location	chr9: 4554685 .. 4555609 (+)
RNA-Seq Expression	Lag0007776
Synteny	Lag0007776

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGGAATTGGTTGCTCTTATGGGATTGGGCAAATCAAGCTCTATACAAGAACCTCGAGAATTTGGTGCTTCTGTTGATGGTGATGAAGATCCCAATATGGTCCTTGGTAAAAGGTAGTGCAGTGTGTAGTATTGCCTAATAAATAATATATTTATGATAAGTGATTCAATTATTCATTATATTTTTTATTATACTTTTTCAGGTTTTTTTCACTCATTCAGACTCTGTTGCCATTATTGCTGCTAATGTTGTTGAAGCAATTCCATACTTCTTTGCTGGTTTGAAGGGTGTTGTCAGGTGCCACTTTCTGTTGCTTGACTTTTGTTACTCTGCTAAGTCTCCTTATCTACTACTCTACTACTTTGTCGGGACACCTTTTTTATGTTGTATTCTGCAGTTTTTTTCCTGACAAGCAAACCTTTAGTTTTAGTGATTAGACCTGAAAGCCAGCTTTTGTTTCCTGGAAATTGAAAATTATCCTACTTGATAATTTGGTATTGTAGTTTTTCCTTTTTTTTTTTTTTTTGCATAATATATTTAGGTGAATTGGATTAAATATTATGATAATGGAACATGAGTATTGTGTTATTGTGGATGAATCATCTGTTTTTTATTGTAAATCTATTGTGGAAGAACTCAACAAATTTTGGGATGTTGGACATCTAATGAAATGTTTAATTTTTACGCAGTTTATGATGGAACTTTGTTTATTCTGTAGCATCATTTGAATATTTAAAACTCTTTTAAGAAAAATGATTGAACTTATTTGGTGTTCTGACCTTAATATTTATAGGAGCGTGCTAACATCCGCTGCACTAGATGTGGTTGCCAAGAACTTGAACTTGATGTTTTTTGAGGTCAATTCAAGACTTATATCTTTTATCTTGAACTTTGCATGTTGTTTGCAACTTGTGTACTGA

mRNA sequence

ATGCCAAGGAATTGGTTGCTCTTATGGGATTGGGCAAATCAAGCTCTATACAAGAACCTCGAGAATTTGGTGCTTCTGTTGATGGTGATGAAGATCCCAATATGGTCCTTGGTTTTTTTCACTCATTCAGACTCTGTTGCCATTATTGCTGCTAATGTTGTTGAAGCAATTCCATACTTCTTTGCTGGTTTGAAGGGTGTTGTCAGGAGCGTGCTAACATCCGCTGCACTAGATGTGGTTGCCAAGAACTTGAACTTGATGTTTTTTGAGGTCAATTCAAGACTTATATCTTTTATCTTGAACTTTGCATGTTGTTTGCAACTTGTGTACTGA

Coding sequence (CDS)

ATGCCAAGGAATTGGTTGCTCTTATGGGATTGGGCAAATCAAGCTCTATACAAGAACCTCGAGAATTTGGTGCTTCTGTTGATGGTGATGAAGATCCCAATATGGTCCTTGGTTTTTTTCACTCATTCAGACTCTGTTGCCATTATTGCTGCTAATGTTGTTGAAGCAATTCCATACTTCTTTGCTGGTTTGAAGGGTGTTGTCAGGAGCGTGCTAACATCCGCTGCACTAGATGTGGTTGCCAAGAACTTGAACTTGATGTTTTTTGAGGTCAATTCAAGACTTATATCTTTTATCTTGAACTTTGCATGTTGTTTGCAACTTGTGTACTGA

Protein sequence

MPRNWLLLWDWANQALYKNLENLVLLLMVMKIPIWSLVFFTHSDSVAIIAANVVEAIPYFFAGLKGVVRSVLTSAALDVVAKNLNLMFFEVNSRLISFILNFACCLQLVY

Homology

[Close]

BLAST of Lag0007776 vs. NCBI nr
Match: XP_002311517.3 (phosphoglucomutase, cytoplasmic isoform X2 [Populus trichocarpa])

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-12
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 39  FFTHSDSVAIIAANVVEAIPYFFAGLKGVVRSVLTSAALDVVAKNLNLMFFEV 92
           F T SDSVAIIAAN VEAIPYF AGLKGV RS+ TSAALDVVAKNLNL FFEV
Sbjct: 269 FVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEV 321

[Close]

BLAST of Lag0007776 vs. NCBI nr
Match: XP_022962861.1 (phosphoglucomutase, cytoplasmic-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-12
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 39  FFTHSDSVAIIAANVVEAIPYFFAGLKGVVRSVLTSAALDVVAKNLNLMFFEV 92
           F T SDSVAIIAAN VEAIPYF AGLKGV RS+ TSAALDVVAKNLNL FFEV
Sbjct: 255 FVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEV 307

[Close]

BLAST of Lag0007776 vs. NCBI nr
Match: KAG6601870.1 (Phosphoglucomutase, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-12
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 39  FFTHSDSVAIIAANVVEAIPYFFAGLKGVVRSVLTSAALDVVAKNLNLMFFEV 92
           F T SDSVAIIAAN VEAIPYF AGLKGV RS+ TSAALDVVAKNLNL FFEV
Sbjct: 361 FVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEV 413

[Close]

BLAST of Lag0007776 vs. NCBI nr
Match: XP_011023840.1 (PREDICTED: phosphoglucomutase, cytoplasmic [Populus euphratica])

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-12
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 39  FFTHSDSVAIIAANVVEAIPYFFAGLKGVVRSVLTSAALDVVAKNLNLMFFEV 92
           F T SDSVAIIAAN VEAIPYF AGLKGV RS+ TSAALDVVAKNLNL FFEV
Sbjct: 313 FVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEV 365

[Close]

BLAST of Lag0007776 vs. NCBI nr
Match: XP_023542816.1 (phosphoglucomutase, cytoplasmic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-12
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 39  FFTHSDSVAIIAANVVEAIPYFFAGLKGVVRSVLTSAALDVVAKNLNLMFFEV 92
           F T SDSVAIIAAN VEAIPYF AGLKGV RS+ TSAALDVVAKNLNL FFEV
Sbjct: 361 FVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEV 413

[Close]

BLAST of Lag0007776 vs. ExPASy Swiss-Prot
Match: Q9SM60 (Phosphoglucomutase, cytoplasmic OS=Pisum sativum OX=3888 GN=PGM1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-14
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 39  FFTHSDSVAIIAANVVEAIPYFFAGLKGVVRSVLTSAALDVVAKNLNLMFFEV 92
           F T SDSVAIIAAN VEAIPYF AGLKGV RS+ TSAALDVVAK+LNL FFEV
Sbjct: 314 FVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEV 366

[Close]

BLAST of Lag0007776 vs. ExPASy Swiss-Prot
Match: Q9ZSQ4 (Phosphoglucomutase, cytoplasmic OS=Populus tremula OX=113636 GN=PGM1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-14
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 39  FFTHSDSVAIIAANVVEAIPYFFAGLKGVVRSVLTSAALDVVAKNLNLMFFEV 92
           F T SDSVAIIAAN VEAIPYF AGLKGV RS+ TSAALDVVAK+LNL FFEV
Sbjct: 313 FVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKSLNLKFFEV 365

[Close]

BLAST of Lag0007776 vs. ExPASy Swiss-Prot
Match: P93804 (Phosphoglucomutase, cytoplasmic 1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-14
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 39  FFTHSDSVAIIAANVVEAIPYFFAGLKGVVRSVLTSAALDVVAKNLNLMFFEV 92
           F T SDSVAIIAAN V++IPYF +GLKGV RS+ TSAALDVVAKNLNL FFEV
Sbjct: 314 FVTPSDSVAIIAANAVQSIPYFASGLKGVARSMPTSAALDVVAKNLNLKFFEV 366

[Close]

BLAST of Lag0007776 vs. ExPASy Swiss-Prot
Match: P93805 (Phosphoglucomutase, cytoplasmic 2 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-14
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 39  FFTHSDSVAIIAANVVEAIPYFFAGLKGVVRSVLTSAALDVVAKNLNLMFFEV 92
           F T SDSVAIIAAN V++IPYF +GLKGV RS+ TSAALDVVAKNLNL FFEV
Sbjct: 314 FVTPSDSVAIIAANAVQSIPYFASGLKGVARSMPTSAALDVVAKNLNLKFFEV 366

[Close]

BLAST of Lag0007776 vs. ExPASy Swiss-Prot
Match: Q9SNX2 (Phosphoglucomutase, cytoplasmic OS=Bromus inermis OX=15371 GN=PGM1 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-14
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 39  FFTHSDSVAIIAANVVEAIPYFFAGLKGVVRSVLTSAALDVVAKNLNLMFFEV 92
           F T SDSVAIIAAN V++IPYF +GLKGV RS+ TSAALDVVAKNLNL FFEV
Sbjct: 312 FVTPSDSVAIIAANAVQSIPYFASGLKGVARSMPTSAALDVVAKNLNLKFFEV 364

The following BLAST results are available for this feature:

BLAST of Lag0007776 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_002311517.3	4.5e-12	84.91	phosphoglucomutase, cytoplasmic isoform X2 [Populus trichocarpa]	[more]
XP_022962861.1	4.5e-12	84.91	phosphoglucomutase, cytoplasmic-like isoform X3 [Cucurbita moschata]	[more]
KAG6601870.1	4.5e-12	84.91	Phosphoglucomutase, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_011023840.1	4.5e-12	84.91	PREDICTED: phosphoglucomutase, cytoplasmic [Populus euphratica]	[more]
XP_023542816.1	4.5e-12	84.91	phosphoglucomutase, cytoplasmic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0007776 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SM60	2.2e-14	83.02	Phosphoglucomutase, cytoplasmic OS=Pisum sativum OX=3888 GN=PGM1 PE=2 SV=1	[more]
Q9ZSQ4	2.2e-14	83.02	Phosphoglucomutase, cytoplasmic OS=Populus tremula OX=113636 GN=PGM1 PE=2 SV=1	[more]
P93804	6.5e-14	79.25	Phosphoglucomutase, cytoplasmic 1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
P93805	6.5e-14	79.25	Phosphoglucomutase, cytoplasmic 2 OS=Zea mays OX=4577 PE=2 SV=2	[more]
Q9SNX2	6.5e-14	79.25	Phosphoglucomutase, cytoplasmic OS=Bromus inermis OX=15371 GN=PGM1 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.120.10		coord: 41..93 e-value: 9.0E-10 score: 40.1
None	No IPR available	PANTHER	PTHR22573:SF58	BNAA09G30060D PROTEIN	coord: 38..93
None	No IPR available	PANTHER	PTHR22573	PHOSPHOHEXOMUTASE FAMILY MEMBER	coord: 38..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007776.1	Lag0007776.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006006	glucose metabolic process
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004614	phosphoglucomutase activity