Lag0007751 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007751
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr9: 4282667 .. 4283986 (-)
RNA-Seq Expression	Lag0007751
Synteny	Lag0007751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATCTTACTAAGTTGTGGAAAGATCTTTCTCTTACCGAGGAAGAGTCATCAGTTGTGAATGTCCCCCAAGATAGTCCGTTCTTGGATCCTGAAATTGTTCCTTTGTGTCTTGTAGGGAAGCTTCTTTCTAGCAAACGGGCCAATCCGGATGCTTTTCGGTCGGTCATGAAGTCTTTATGGAAGGTTCACTTTTCTACGCGTATTGAATCTGTTGGTGAAAACTTGTTCGTTTTTCAATTTCGGACGAGGATGGAAAAGAATCGGATCCTAGCGTCCAGCCCGTGGTCTTTTGATAACTCCCTCCTCGTTTTGGTTTCGCCCAAGGAGAATGTGTATCTGACTGATTTATCGTTTACCAGGGCTTCCTTTTGGGTTTCCATCCACAATGTGCCTTTTAACTGTCTAACTCTTGCCATGGCTAAGGTTCTTGGTGGTAAGATCGGGCAGGTTGAAGAGGTTGATGGTGAAGGGGAAGAGCGAGGTATTGGCCCCGTTATGTGTATTCGAGTGTCCCTCGACCTGAGCTCAGATTTACGCCGAGGTCTTACGCTTCGAATCGGTGCTGGTCAGGAGCGATGGTGTCTGATCACTTACGAGCGATTGCCGGAATTCTGTTACAGTTGTGGGTGTATTGGCCATCCACGCCGGGAGTGTTTGGTTTTATCGGCCGGCGATGATGGGGTGCTTATTGATCAGTACGGTTTGTGGGTCCGTTCGGTTGGATTCCGTTCATTCCCATACTCGCCTCTTCGGAATGCCCCAATCGTGTCAGAGGTGGAAGCGCCGGTGACAGAAGGGCTTCTTTCTCAGGTGCCGGCGGCCCCATCTCCGCCGGACGAGCTCTCACCGGTGGGGGTGGTGGCCGATGTTTCGCAGGATCGAGCGGTTCCACCTGATCAACCGGAAAAGGGGGGTAGTTGGAACGTGGCTCCTTGTATCATGGAGGTCTCAACTGTCCACGCGTCTGGCCCCTTGGAGAATGATAGTGGGGTCCATATAGCTAAGTCTGATGCAAATATTTCTATTGGGCCTCCAATTCCTATTGGGCCTCAACTTCTGGTACAACCCCATCCTTCACGGAAAAGCTGGAAATGCAGGGCCCGTGGAGCGTTGATGGATATCACGAATGACGATGGCCAATGTTCAGTCCATTTGGGTAAGCGTCCTGTACTTATCCCTGATATATCTGCTGACCCTTTGGATCCTAAACGTTTAAAGTCTGTTTCTGTGGATGCGGCACATGAGATTTCTGAGTCTAATGGTTCTTCTCTTACATCGGCGGAGGCTGGTTGCCAGCCCCGCCGGGCGCCATGA

mRNA sequence

ATGGAGGATCTTACTAAGTTGTGGAAAGATCTTTCTCTTACCGAGGAAGAGTCATCAGTTGTGAATGTCCCCCAAGATAGTCCGTTCTTGGATCCTGAAATTGTTCCTTTGTGTCTTGTAGGGAAGCTTCTTTCTAGCAAACGGGCCAATCCGGATGCTTTTCGGTCGGTCATGAAGTCTTTATGGAAGGTTCACTTTTCTACGCGTATTGAATCTGTTGGTGAAAACTTGTTCGTTTTTCAATTTCGGACGAGGATGGAAAAGAATCGGATCCTAGCGTCCAGCCCGTGGTCTTTTGATAACTCCCTCCTCGTTTTGGTTTCGCCCAAGGAGAATGTGTATCTGACTGATTTATCGTTTACCAGGGCTTCCTTTTGGGTTTCCATCCACAATGTGCCTTTTAACTGTCTAACTCTTGCCATGGCTAAGGTTCTTGGTGGTAAGATCGGGCAGGTTGAAGAGGTTGATGGTGAAGGGGAAGAGCGAGGTATTGGCCCCGTTATGTGTATTCGAGTGTCCCTCGACCTGAGCTCAGATTTACGCCGAGGTCTTACGCTTCGAATCGGTGCTGGTCAGGAGCGATGGTGTCTGATCACTTACGAGCGATTGCCGGAATTCTGTTACAGTTGTGGGTGTATTGGCCATCCACGCCGGGAGTGTTTGGTTTTATCGGCCGGCGATGATGGGGTGCTTATTGATCAGTACGGTTTGTGGGTCCGTTCGGTTGGATTCCGTTCATTCCCATACTCGCCTCTTCGGAATGCCCCAATCGTGTCAGAGGTGGAAGCGCCGGTGACAGAAGGGCTTCTTTCTCAGGTGCCGGCGGCCCCATCTCCGCCGGACGAGCTCTCACCGGTGGGGGTGGTGGCCGATGTTTCGCAGGATCGAGCGGTTCCACCTGATCAACCGGAAAAGGGGGGTAGTTGGAACGTGGCTCCTTGTATCATGGAGGTCTCAACTGTCCACGCGTCTGGCCCCTTGGAGAATGATAGTGGGGTCCATATAGCTAAGTCTGATGCAAATATTTCTATTGGGCCTCCAATTCCTATTGGGCCTCAACTTCTGGTACAACCCCATCCTTCACGGAAAAGCTGGAAATGCAGGGCCCGTGGAGCGTTGATGGATATCACGAATGACGATGGCCAATGTTCAGTCCATTTGGGTAAGCGTCCTGTACTTATCCCTGATATATCTGCTGACCCTTTGGATCCTAAACGTTTAAAGTCTGTTTCTGTGGATGCGGCACATGAGATTTCTGAGTCTAATGGTTCTTCTCTTACATCGGCGGAGGCTGGTTGCCAGCCCCGCCGGGCGCCATGA

Coding sequence (CDS)

ATGGAGGATCTTACTAAGTTGTGGAAAGATCTTTCTCTTACCGAGGAAGAGTCATCAGTTGTGAATGTCCCCCAAGATAGTCCGTTCTTGGATCCTGAAATTGTTCCTTTGTGTCTTGTAGGGAAGCTTCTTTCTAGCAAACGGGCCAATCCGGATGCTTTTCGGTCGGTCATGAAGTCTTTATGGAAGGTTCACTTTTCTACGCGTATTGAATCTGTTGGTGAAAACTTGTTCGTTTTTCAATTTCGGACGAGGATGGAAAAGAATCGGATCCTAGCGTCCAGCCCGTGGTCTTTTGATAACTCCCTCCTCGTTTTGGTTTCGCCCAAGGAGAATGTGTATCTGACTGATTTATCGTTTACCAGGGCTTCCTTTTGGGTTTCCATCCACAATGTGCCTTTTAACTGTCTAACTCTTGCCATGGCTAAGGTTCTTGGTGGTAAGATCGGGCAGGTTGAAGAGGTTGATGGTGAAGGGGAAGAGCGAGGTATTGGCCCCGTTATGTGTATTCGAGTGTCCCTCGACCTGAGCTCAGATTTACGCCGAGGTCTTACGCTTCGAATCGGTGCTGGTCAGGAGCGATGGTGTCTGATCACTTACGAGCGATTGCCGGAATTCTGTTACAGTTGTGGGTGTATTGGCCATCCACGCCGGGAGTGTTTGGTTTTATCGGCCGGCGATGATGGGGTGCTTATTGATCAGTACGGTTTGTGGGTCCGTTCGGTTGGATTCCGTTCATTCCCATACTCGCCTCTTCGGAATGCCCCAATCGTGTCAGAGGTGGAAGCGCCGGTGACAGAAGGGCTTCTTTCTCAGGTGCCGGCGGCCCCATCTCCGCCGGACGAGCTCTCACCGGTGGGGGTGGTGGCCGATGTTTCGCAGGATCGAGCGGTTCCACCTGATCAACCGGAAAAGGGGGGTAGTTGGAACGTGGCTCCTTGTATCATGGAGGTCTCAACTGTCCACGCGTCTGGCCCCTTGGAGAATGATAGTGGGGTCCATATAGCTAAGTCTGATGCAAATATTTCTATTGGGCCTCCAATTCCTATTGGGCCTCAACTTCTGGTACAACCCCATCCTTCACGGAAAAGCTGGAAATGCAGGGCCCGTGGAGCGTTGATGGATATCACGAATGACGATGGCCAATGTTCAGTCCATTTGGGTAAGCGTCCTGTACTTATCCCTGATATATCTGCTGACCCTTTGGATCCTAAACGTTTAAAGTCTGTTTCTGTGGATGCGGCACATGAGATTTCTGAGTCTAATGGTTCTTCTCTTACATCGGCGGAGGCTGGTTGCCAGCCCCGCCGGGCGCCATGA

Protein sequence

MEDLTKLWKDLSLTEEESSVVNVPQDSPFLDPEIVPLCLVGKLLSSKRANPDAFRSVMKSLWKVHFSTRIESVGENLFVFQFRTRMEKNRILASSPWSFDNSLLVLVSPKENVYLTDLSFTRASFWVSIHNVPFNCLTLAMAKVLGGKIGQVEEVDGEGEERGIGPVMCIRVSLDLSSDLRRGLTLRIGAGQERWCLITYERLPEFCYSCGCIGHPRRECLVLSAGDDGVLIDQYGLWVRSVGFRSFPYSPLRNAPIVSEVEAPVTEGLLSQVPAAPSPPDELSPVGVVADVSQDRAVPPDQPEKGGSWNVAPCIMEVSTVHASGPLENDSGVHIAKSDANISIGPPIPIGPQLLVQPHPSRKSWKCRARGALMDITNDDGQCSVHLGKRPVLIPDISADPLDPKRLKSVSVDAAHEISESNGSSLTSAEAGCQPRRAP

Homology

[Close]

BLAST of Lag0007751 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 241.5 bits (615), Expect = 1.4e-59
Identity = 107/241 (44.40%), Postives = 159/241 (65.98%), Query Frame = 0


Query: 1   MEDLTKLWKDLSLTEEESSVVNVPQDSPFLDPEIVPLCLVGKLLSSKRANPDAFRSVMKS 60
           M+++T LW+    T +E+  V + +  P L  + V LC+V KL +SKR + +A RSVMKS
Sbjct: 1   MDEITDLWEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 60

Query: 61  LWKVHFSTRIESVGENLFVFQFRTRMEKNRILASSPWSFDNSLLVLVSPKENVYLTDLSF 120
           +W+VH STR E +G N++V  F++  EK+R+L+S PW+F+ SLLVL SP       D++F
Sbjct: 61  VWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNF 120

Query: 121 TRASFWVSIHNVPFNCLTLAMAKVLGGKIGQVEEVDGEGEERGIGPVMCIRVSLDLSSDL 180
              +FW+ IHN+PF C++  MA +LG K+G VEE++G+G +   GP + +RV +D+S  L
Sbjct: 121 NFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVSKPL 180

Query: 181 RRGLTLRIGAGQERWCLITYERLPEFCYSCGCIGHPRRECLVLSAGDDGVLIDQYGLWVR 240
           RRG+ L+   G++ WC + YE+LP+FCY CG IGH  REC   S        +QYG W+R
Sbjct: 181 RRGIKLKNSDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQYGDWLR 240

Query: 241 S 242
           +
Sbjct: 241 A 241

[Close]

BLAST of Lag0007751 vs. NCBI nr
Match: XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])

HSP 1 Score: 220.3 bits (560), Expect = 3.2e-53
Identity = 98/219 (44.75%), Postives = 140/219 (63.93%), Query Frame = 0


Query: 1   MEDLTKLWKDLSLTEEESSVVNVPQDSPFLDPEIVPLCLVGKLLSSKRANPDAFRSVMKS 60
           M+D+TKLW++ +L +EE   + +    P L  + + LC VGKL  SKR   +AF SVMK 
Sbjct: 1   MDDITKLWENFTLIKEEEDTIVIDNQKPILTVDNIQLCAVGKLHPSKRITVEAFASVMKQ 60

Query: 61  LWKVHFSTRIESVGENLFVFQFRTRMEKNRILASSPWSFDNSLLVLVSPKENVYLTDLSF 120
           +WK+H STRIE+ G N++V  F+T  EK R+ +  PW+FD SLL+LV         D+  
Sbjct: 61  VWKIHNSTRIETAGLNIYVIAFKTMAEKIRVFSLGPWTFDKSLLILVPTTAANKPLDIDI 120

Query: 121 TRASFWVSIHNVPFNCLTLAMAKVLGGKIGQVEEVDGEGEERGIGPVMCIRVSLDLSSDL 180
           +  +FWV IH + F C+T  MAK LG ++G+VEEVDG      + P + +RV +++   L
Sbjct: 121 SLCAFWVQIHYITFECMTKDMAKFLGARLGEVEEVDGMSSYDWVRPFLWVRVKINVLKPL 180

Query: 181 RRGLTLRIGAGQERWCLITYERLPEFCYSCGCIGHPRRE 220
           RRGL ++   G++ WC + YERLP+FCY CGC+GH  RE
Sbjct: 181 RRGLKVKTSDGKDIWCPLRYERLPDFCYGCGCVGHSIRE 219

[Close]

BLAST of Lag0007751 vs. NCBI nr
Match: XP_022155933.1 (uncharacterized protein LOC111022932 [Momordica charantia])

HSP 1 Score: 201.1 bits (510), Expect = 2.0e-47
Identity = 93/201 (46.27%), Postives = 132/201 (65.67%), Query Frame = 0


Query: 1   MEDLTKLWKDLSLTEEESSVVNVPQDSPFLDPEIVPLCLVGKLLSSKRANPDAFRSVMKS 60
           M+++T+LW++ +LT+E+   + +  + P + PE V    VGKL +SKR + +AFRSVMKS
Sbjct: 1   MDEITELWENFTLTKEKEETIIIDSEKPLMTPENVQRYAVGKLHTSKRISVEAFRSVMKS 60

Query: 61  LWKVHFSTRIESVGENLFVFQFRTRMEKNRILASSPWSFDNSLLVLVSPKENVYLTDLSF 120
           LWKVH ST IE+ G NL+V  F++  EKNR+L S PWSF+ SLLVL SP       D++F
Sbjct: 61  LWKVHESTHIETAGMNLYVIVFKSMAEKNRVLTSGPWSFETSLLVLTSPTATDQPRDMNF 120

Query: 121 TRASFWVSIHNVPFNCLTLAMAKVLGGKIGQVEEVDGEGEERGIGPVMCIRVSLDLSSDL 180
              + W+ IH +PF C+   MAK LG +IG+VEE+D  G     GP + +RV +D+S   
Sbjct: 121 NFFALWIQIHCIPFQCMIKDMAKFLGTRIGEVEEIDCNGSYEWTGPFIRVRVQIDISKPF 180

Query: 181 RRGLTLRIGAGQERWCLITYE 202
           +RGL +R G  +E WC + YE
Sbjct: 181 KRGLKVRTGDEKESWCPLRYE 201

[Close]

BLAST of Lag0007751 vs. NCBI nr
Match: XP_006484927.1 (uncharacterized protein LOC102626623 [Citrus sinensis])

HSP 1 Score: 182.2 bits (461), Expect = 9.8e-42
Identity = 91/241 (37.76%), Postives = 135/241 (56.02%), Query Frame = 0


Query: 2   EDLTKLWKDLSLTEEESSVVNVPQDSPFLDPEIVPLCLVGKLLSSKRANPDAFRSVMKSL 61
           E+L +  K ++L +EE   V            +   CLVGK+L ++  N +  R  M+  
Sbjct: 4   EELIRRCKTITLKDEEDDAVMFIGGMKNDGERVAAHCLVGKILLNRDVNKEGLRYAMQLA 63

Query: 62  WKVHFSTRIESVGENLFVFQFRTRMEKNRILASSPWSFDNSLLVLVSPKENVYLTDLSFT 121
           WK     ++ES+G+N+FVF+F T  +K R+L   PW FD +L+VLV P     +    FT
Sbjct: 64  WKTTKEIKVESLGDNIFVFKFATEQDKKRVLTEGPWHFDKALIVLVEPVGMGSIKRQPFT 123

Query: 122 RASFWVSIHNVPFNCLTLAMAKVLGGKIGQVEEVDGEGEERGIGPVMCIRVSLDLSSDLR 181
             SFWV IH +P  C+     + LG KIGQVEEV+ + E   IGP   +R+S+D++  L+
Sbjct: 124 HTSFWVQIHGMPIKCMVKGTIEKLGEKIGQVEEVETDEEGECIGPFARVRISVDITKPLK 183

Query: 182 RGLTLRIGAGQERWCLITYERLPEFCYSCGCIGHPRRECLVLSAGDDGVLIDQYGLWVRS 241
           R L L+    ++   LI Y+RLP+FC+ CG IGH  REC+         LI  YG W+++
Sbjct: 184 RILILKQEGEEDIVMLIKYDRLPDFCFCCGLIGHQFRECIQYKGQPKEKLI--YGGWMKA 242

Query: 242 V 243
           +
Sbjct: 244 L 242

[Close]

BLAST of Lag0007751 vs. NCBI nr
Match: OMO61345.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 179.5 bits (454), Expect = 6.3e-41
Identity = 89/244 (36.48%), Postives = 139/244 (56.97%), Query Frame = 0


Query: 2   EDLTKLWKDLSLTEEESSVVNVPQDSPFLDPEIVP--LCLVGKLLSSKRANPDAFRSVMK 61
           E LT LW++ +LTEEE+  + V  D   +D  +     CL+GKLLS +  N +  R+VM 
Sbjct: 3   EGLTDLWENFNLTEEEN--LEVAVDPRLVDETLAEGNNCLIGKLLSRRPVNVEVMRNVMH 62

Query: 62  SLWKVHFSTRIESVGENLFVFQFRTRMEKNRILASSPWSFDNSLLVLVSPKENVYLTDLS 121
            +WK+    ++  +GENLF+FQF + +EK R+   +PW+F+ +LLVL S      + D+ 
Sbjct: 63  MVWKLAGGLQVREIGENLFIFQFESDLEKERVYQQTPWNFNKALLVLKSYDAYDCVEDIK 122

Query: 122 FTRASFWVSIHNVPFNCLTLAMAKVLGGKIGQVEEVDGEGEERGIGPVMCIRVSLDLSSD 181
               SFW   H++P   +  ++ +V+G   G VEE+D  G++   G  +  R  L+++  
Sbjct: 123 LDGCSFWKQAHDLPLGFMNESIGRVIGESFGTVEEIDTCGDKIAWGKFLRFRARLNVTKP 182

Query: 182 LRRGLTLRIGAGQERWCLITYERLPEFCYSCGCIGHPRREC--LVLSAGDDGVLIDQYGL 241
           LRRG+ L    G +      YE+LP+FCY CGC+ H   EC   V+   D G +I +YG 
Sbjct: 183 LRRGMILTAPNGGKILISFRYEKLPDFCYVCGCLTHVENECEKAVVMRRDKGKIIKEYGP 242

[Close]

BLAST of Lag0007751 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.6e-60
Identity = 107/241 (44.40%), Postives = 159/241 (65.98%), Query Frame = 0


Query: 1   MEDLTKLWKDLSLTEEESSVVNVPQDSPFLDPEIVPLCLVGKLLSSKRANPDAFRSVMKS 60
           M+++T LW+    T +E+  V + +  P L  + V LC+V KL +SKR + +A RSVMKS
Sbjct: 1   MDEITDLWEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 60

Query: 61  LWKVHFSTRIESVGENLFVFQFRTRMEKNRILASSPWSFDNSLLVLVSPKENVYLTDLSF 120
           +W+VH STR E +G N++V  F++  EK+R+L+S PW+F+ SLLVL SP       D++F
Sbjct: 61  VWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNF 120

Query: 121 TRASFWVSIHNVPFNCLTLAMAKVLGGKIGQVEEVDGEGEERGIGPVMCIRVSLDLSSDL 180
              +FW+ IHN+PF C++  MA +LG K+G VEE++G+G +   GP + +RV +D+S  L
Sbjct: 121 NFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVSKPL 180

Query: 181 RRGLTLRIGAGQERWCLITYERLPEFCYSCGCIGHPRRECLVLSAGDDGVLIDQYGLWVR 240
           RRG+ L+   G++ WC + YE+LP+FCY CG IGH  REC   S        +QYG W+R
Sbjct: 181 RRGIKLKNSDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQYGDWLR 240

Query: 241 S 242
           +
Sbjct: 241 A 241

[Close]

BLAST of Lag0007751 vs. ExPASy TrEMBL
Match: A0A6J1DVS4 (uncharacterized protein LOC111023555 OS=Momordica charantia OX=3673 GN=LOC111023555 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.6e-53
Identity = 98/219 (44.75%), Postives = 140/219 (63.93%), Query Frame = 0


Query: 1   MEDLTKLWKDLSLTEEESSVVNVPQDSPFLDPEIVPLCLVGKLLSSKRANPDAFRSVMKS 60
           M+D+TKLW++ +L +EE   + +    P L  + + LC VGKL  SKR   +AF SVMK 
Sbjct: 1   MDDITKLWENFTLIKEEEDTIVIDNQKPILTVDNIQLCAVGKLHPSKRITVEAFASVMKQ 60

Query: 61  LWKVHFSTRIESVGENLFVFQFRTRMEKNRILASSPWSFDNSLLVLVSPKENVYLTDLSF 120
           +WK+H STRIE+ G N++V  F+T  EK R+ +  PW+FD SLL+LV         D+  
Sbjct: 61  VWKIHNSTRIETAGLNIYVIAFKTMAEKIRVFSLGPWTFDKSLLILVPTTAANKPLDIDI 120

Query: 121 TRASFWVSIHNVPFNCLTLAMAKVLGGKIGQVEEVDGEGEERGIGPVMCIRVSLDLSSDL 180
           +  +FWV IH + F C+T  MAK LG ++G+VEEVDG      + P + +RV +++   L
Sbjct: 121 SLCAFWVQIHYITFECMTKDMAKFLGARLGEVEEVDGMSSYDWVRPFLWVRVKINVLKPL 180

Query: 181 RRGLTLRIGAGQERWCLITYERLPEFCYSCGCIGHPRRE 220
           RRGL ++   G++ WC + YERLP+FCY CGC+GH  RE
Sbjct: 181 RRGLKVKTSDGKDIWCPLRYERLPDFCYGCGCVGHSIRE 219

[Close]

BLAST of Lag0007751 vs. ExPASy TrEMBL
Match: A0A6J1DP89 (uncharacterized protein LOC111022932 OS=Momordica charantia OX=3673 GN=LOC111022932 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.9e-48
Identity = 93/201 (46.27%), Postives = 132/201 (65.67%), Query Frame = 0


Query: 1   MEDLTKLWKDLSLTEEESSVVNVPQDSPFLDPEIVPLCLVGKLLSSKRANPDAFRSVMKS 60
           M+++T+LW++ +LT+E+   + +  + P + PE V    VGKL +SKR + +AFRSVMKS
Sbjct: 1   MDEITELWENFTLTKEKEETIIIDSEKPLMTPENVQRYAVGKLHTSKRISVEAFRSVMKS 60

Query: 61  LWKVHFSTRIESVGENLFVFQFRTRMEKNRILASSPWSFDNSLLVLVSPKENVYLTDLSF 120
           LWKVH ST IE+ G NL+V  F++  EKNR+L S PWSF+ SLLVL SP       D++F
Sbjct: 61  LWKVHESTHIETAGMNLYVIVFKSMAEKNRVLTSGPWSFETSLLVLTSPTATDQPRDMNF 120

Query: 121 TRASFWVSIHNVPFNCLTLAMAKVLGGKIGQVEEVDGEGEERGIGPVMCIRVSLDLSSDL 180
              + W+ IH +PF C+   MAK LG +IG+VEE+D  G     GP + +RV +D+S   
Sbjct: 121 NFFALWIQIHCIPFQCMIKDMAKFLGTRIGEVEEIDCNGSYEWTGPFIRVRVQIDISKPF 180

Query: 181 RRGLTLRIGAGQERWCLITYE 202
           +RGL +R G  +E WC + YE
Sbjct: 181 KRGLKVRTGDEKESWCPLRYE 201

[Close]

BLAST of Lag0007751 vs. ExPASy TrEMBL
Match: A0A1R3GTB5 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.1e-41
Identity = 89/244 (36.48%), Postives = 139/244 (56.97%), Query Frame = 0


Query: 2   EDLTKLWKDLSLTEEESSVVNVPQDSPFLDPEIVP--LCLVGKLLSSKRANPDAFRSVMK 61
           E LT LW++ +LTEEE+  + V  D   +D  +     CL+GKLLS +  N +  R+VM 
Sbjct: 3   EGLTDLWENFNLTEEEN--LEVAVDPRLVDETLAEGNNCLIGKLLSRRPVNVEVMRNVMH 62

Query: 62  SLWKVHFSTRIESVGENLFVFQFRTRMEKNRILASSPWSFDNSLLVLVSPKENVYLTDLS 121
            +WK+    ++  +GENLF+FQF + +EK R+   +PW+F+ +LLVL S      + D+ 
Sbjct: 63  MVWKLAGGLQVREIGENLFIFQFESDLEKERVYQQTPWNFNKALLVLKSYDAYDCVEDIK 122

Query: 122 FTRASFWVSIHNVPFNCLTLAMAKVLGGKIGQVEEVDGEGEERGIGPVMCIRVSLDLSSD 181
               SFW   H++P   +  ++ +V+G   G VEE+D  G++   G  +  R  L+++  
Sbjct: 123 LDGCSFWKQAHDLPLGFMNESIGRVIGESFGTVEEIDTCGDKIAWGKFLRFRARLNVTKP 182

Query: 182 LRRGLTLRIGAGQERWCLITYERLPEFCYSCGCIGHPRREC--LVLSAGDDGVLIDQYGL 241
           LRRG+ L    G +      YE+LP+FCY CGC+ H   EC   V+   D G +I +YG 
Sbjct: 183 LRRGMILTAPNGGKILISFRYEKLPDFCYVCGCLTHVENECEKAVVMRRDKGKIIKEYGP 242

[Close]

BLAST of Lag0007751 vs. ExPASy TrEMBL
Match: A0A5C7IW83 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001918 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.8e-41
Identity = 88/244 (36.07%), Postives = 145/244 (59.43%), Query Frame = 0


Query: 2   EDLTKLWKDLSLTEEESSVVNVPQDSPFLDPEIVPLCLVGKLLSSKRANPDAFRSVMKSL 61
           +++T L+++LS+ EE+  V+   +       + V  CLVGK+L+ K+ N +AFRS+++ +
Sbjct: 4   KEITDLYENLSIAEEDGVVLETSETEIEDGAKDVDCCLVGKVLTGKKVNREAFRSLIEQI 63

Query: 62  WKVHFSTRIESVGENLFVFQFRTRMEKNRILASSPWSFDNSLLVLVSPKENVYLTDLSFT 121
           W       +E V +N+F+F F  + ++NR+    PW F  SL+VL  PK     + L F 
Sbjct: 64  WSPFGQVEVEVVADNIFMFYFIKQEDRNRVWQRGPWHFGKSLIVLEKPKGTGNYSQLGFN 123

Query: 122 RASFWVSIHNVPFNCLTLAMAKVLGGKIGQVEEVDGEGEERGIGPVMCIRVSLDLSSDLR 181
           +A+FWV IH+ P  C+   MAK +  +IG+V E+  + +E   G  M ++V +D+S  LR
Sbjct: 124 KAAFWVQIHDTPIICMNRRMAKWMAEQIGEVVEIPADSKECW-GKFMRVKVCIDISKPLR 183

Query: 182 RGLTLRIGAGQERWCL-ITYERLPEFCYSCGCIGHPRRECLVLSAGDDGV--LIDQYGLW 241
           R L L++G  +E   + + YERLPEFCY+CG +GH   ECL + A    +     +YG W
Sbjct: 184 RWLRLKLGKTEEITTVSLKYERLPEFCYACGRVGHGILECLDVDARKQALECTPTKYGAW 243

Query: 242 VRSV 243
           ++++
Sbjct: 244 LKAL 246

[Close]

BLAST of Lag0007751 vs. TAIR 10
Match: AT3G42140.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 51.2 bits (121), Expect = 2.4e-06
Identity = 34/141 (24.11%), Postives = 56/141 (39.72%), Query Frame = 0


Query: 80  FQFRTRMEKNRILASSPWSFDNSLLVLVSPKENVYLTDLSFTRASFWVSIHNVPFNCLTL 139
           F F++      IL   PWSF++ + V+   +     +D  F R  FW+ I  +P   LT 
Sbjct: 64  FLFQSEESMFSILRRGPWSFNDWMCVI--QRWTKLHSDAEFKRIPFWIQIRGIPLRFLTA 123

Query: 140 AMAKVLGGKIGQVEEVDGEGEERGIGPVMCIRVSLDLSSDLRRGLTLRIGAGQERWCLIT 199
            +   +G ++G                       L L ++L R +++             
Sbjct: 124 RIITSIGERMG-----------------------LFLETNLGRDVSV---------LKFQ 170

Query: 200 YERLPEFCYSCGCIGHPRREC 221
           YE+L  FC +CG + H   EC
Sbjct: 184 YEKLKNFCTTCGMLSHDASEC 170

The following BLAST results are available for this feature:

BLAST of Lag0007751 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149484.1	1.4e-59	44.40	uncharacterized protein LOC111017902 [Momordica charantia]	[more]
XP_022156711.1	3.2e-53	44.75	uncharacterized protein LOC111023555 [Momordica charantia]	[more]
XP_022155933.1	2.0e-47	46.27	uncharacterized protein LOC111022932 [Momordica charantia]	[more]
XP_006484927.1	9.8e-42	37.76	uncharacterized protein LOC102626623 [Citrus sinensis]	[more]
OMO61345.1	6.3e-41	36.48	reverse transcriptase [Corchorus capsularis]	[more]

BLAST of Lag0007751 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0007751 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D765	6.6e-60	44.40	uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DVS4	1.6e-53	44.75	uncharacterized protein LOC111023555 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DP89	9.9e-48	46.27	uncharacterized protein LOC111022932 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A1R3GTB5	3.1e-41	36.48	Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV...	[more]
A0A5C7IW83	6.8e-41	36.07	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00191...	[more]

BLAST of Lag0007751 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42140.1	2.4e-06	24.11	zinc ion binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 37..171 e-value: 1.1E-20 score: 73.6
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 174..221 e-value: 6.3E-13 score: 48.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 398..439
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 415..431
None	No IPR available	PANTHER	PTHR31286:SF84	SUBFAMILY NOT NAMED	coord: 37..223
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 37..223
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 207..220 score: 9.075821

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007751.1	Lag0007751.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding