Lag0007739 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007739
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr9: 4045610 .. 4047677 (-)
RNA-Seq Expression	Lag0007739
Synteny	Lag0007739

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGGCGGATTGGGATGGATTGTCCGTGACTCCATAGGTTCTCTAATTTGCGCTAGTTTTAAACAAGTGAAGAGAAGATGGTCGATCAAATGTTTAGAGTTGGAGGCTATCACAGTGAGATTAAAGAACTTACTAAGTCGAATGGAGAGGTCGTTTCCAAGAATCATTAGTTGAAGCGGACTCCTCCAAAGCTAACTCCATCCTCAATCATCATTCTGATGACATTTCTGAAGCTAGAGTCTTGGCGGTGAAGGTTACCGATCTTGCTAATCGGGTGGGGGAGGTTGATTTTACCTTCAGCCCACGGGAATCGAATGTTGAAGCACACTCCCTGGCGCATTTTGCTGCTGCCCTTGATGTCTCAGGTAATTCCAGCTCTATTGTTTTGGATTCTTCCAATTCGGAAGATGAGTTTTTTTGTAAAGAGGCTTTGCCTCCTTTGATGAACTCTTCGTTTTTTAGGAAGAGTAGTTGTAGTTCTGTTGGTTGTGGTTAGTGTTATTTATTCCTTTTAAAAATATATATATATAATAACAATTCATTGTCATTCAAAAGAAAAGTTAATTTTCTTTAAATTTCTTTAAAAAAAGAAAAATGAATTCATTAGATTTAGAATTTGAATGGAAAAATTATCTTCAATTAAGACAAAACCAATCGTTGTATTATATAGATGTAGATTGTTTTTATTCGGTAATGTAAAATTCAACTTAACTTAATTTCAGAAATTAAGACAAAATGGTACACAATTTACAATGATCGGACAAACCTAGTAAAAAAATTCATCCTTATTGTTCTTTTAATAATAATTATTATTATTGTTATAATTAAAAAATAAAAAATAAATAAAAAAGCTGGTGGTGTGTTATACTTATATGTAATAGTATAAATATATATGGAAAAAATACACTTTTAGTCCCTGAGGTTTGGGTTAGGTTTCACTTTGGTCCTTGAGTTTTCAAACTCAACAATTTAGTCCTTGAGGTTTGGTTTTAGTTTCATTTTAGTCCCTCCATCCATTTTTTCGTTAAAAACTAACGATTTGCTGATGTGGCACTAGTTTTTTTATTAAAAAGTTATTTTTGAATTTTTTAAATATAAATATATTAAAATAATAAAAATATTAATTTTTAATATATTTTTATTTGTTTTTTCATCTTCTTCAACATAGCCACCACCAACCTCTTCCTTCTTCAACACTCAATCACCAACATATCGCGGGCGGTACATTTTTTTTCGTTTCTTCTTCTTTTTTCATTTTCTCTCTCATCTTTCTCTCTCATCTCACTTCACTCTCTCTGCAACTATGTTCGTCGTCCGTTCAGACTGAAGTTCGGCGTCATTCGTAGTCCGTTTGTCGTCCGTTCAGACTGAAGTTCGCTGCCCATTCGTAGTCTTTCGGCTTCACCCCTTCGAGCGGCGAAATCGCAAGCTGTTGGTTCCAGATCTAAAGAAATTGCGGCATCGAAATCGCGTGAACGGTCGTGTTAGTTCCAGATCTAACGAAATAGCAGGTGAAAAATCATGTGAACGGTCGTGTTGGTTCCAGATCTAACAAAATCGTGGCGGCGAAATCGCGTTCACAACTCGATTTCCAGATCTAACGTGCTCGAAATCGCGTTCCAGATCTAACATGCTCGAAATAGCGTTCCAGATCTAACGACCCGAGCGGCGGTGCCTTCCTTCTCCCCACGAACGAACAGATGGCGAACGAACGATGAAGCCTCCACGAACGGAGCTATTGGTTCTAGATCTGACAAAGCCCCCACGAACGGATGGCGAACGGAGTTGTTGGTTCTAGATCTGACGAAGCCCCCACGAACGGACGGCGAACGGACTACGAATGGCAGTTTGTTTCCAGATCTGACGAAGCCCCATGGGTTTGTTGTTGTGGGTCTTACAACGTTTAAAAACACATAAATTTTGGAGAATGAAGGAAGGAGGAGAAGAAGAGAAGAGAAGAGAAGAGAATAGGGAAAGTGAAGAAGAAGATGGTGGTGGTGGTGGTGGGAGTGATGAAGAAGAAGATGAAAGTGAAGAAGAAGATGAAAGTGAAGAAGAAGAATAA

mRNA sequence

ATGAGCGGCGGATTGGGATGGATTGTCCGTGACTCCATAGTCGAATGGAGAGGTCGTTTCCAAGAATCATTAGTTGAAGCGGACTCCTCCAAAGCTAACTCCATCCTCAATCATCATTCTGATGACATTTCTGAAGCTAGAGTCTTGGCGGTGAAGGTTACCGATCTTGCTAATCGGGTGGGGGAGGTTGATTTTACCTTCAGCCCACGGGAATCGAATGTTGAAGCACACTCCCTGGCGCATTTTGCTGCTGCCCTTGATGTCTCAGGTAATTCCAGCTCTATTGTTTTGGATTCTTCCAATTCGGAAGATGAGTTTTTTTGTAAAGAGGCTTTGCCTCCTTTGATGAACTCTTCGTTTTTTAGGAAGAGTAGTTGTAGTTCTGTTGGTTGTGTCCGTTTGTCGTCCGTTCAGACTGAAGTTCGCTGCCCATTCGTAGTCTTTCGGCTTCACCCCTTCGAGCGGCGAAATCGCAAGCTGTTGGTTCCAGATCTAAAGAAATTGCGGCATCGAAATCGCGTGAACGGTCGTGTTAGTTCCAGATCTAACGAAATAGCAGATCTAACGACCCGAGCGGCGGTGCCTTCCTTCTCCCCACGAACGAACAGATGGCGAACGAACGATGAAGCCTCCACGAACGGAGCTATTGGTTCTAGATCTGACAAAGCCCCCACGAACGGATGGCGAACGGAGTTGTTGGTTCTAGATCTGACGAAGCCCCCACGAACGGACGGCGAACGGACTACGAATGGCAGAGGAGAAGAAGAGAAGAGAAGAGAAGAGAATAGGGAAAGTGAAGAAGAAGATGGTGGTGGTGGTGGTGGGAGTGATGAAGAAGAAGATGAAAGTGAAGAAGAAGATGAAAGTGAAGAAGAAGAATAA

Coding sequence (CDS)

ATGAGCGGCGGATTGGGATGGATTGTCCGTGACTCCATAGTCGAATGGAGAGGTCGTTTCCAAGAATCATTAGTTGAAGCGGACTCCTCCAAAGCTAACTCCATCCTCAATCATCATTCTGATGACATTTCTGAAGCTAGAGTCTTGGCGGTGAAGGTTACCGATCTTGCTAATCGGGTGGGGGAGGTTGATTTTACCTTCAGCCCACGGGAATCGAATGTTGAAGCACACTCCCTGGCGCATTTTGCTGCTGCCCTTGATGTCTCAGGTAATTCCAGCTCTATTGTTTTGGATTCTTCCAATTCGGAAGATGAGTTTTTTTGTAAAGAGGCTTTGCCTCCTTTGATGAACTCTTCGTTTTTTAGGAAGAGTAGTTGTAGTTCTGTTGGTTGTGTCCGTTTGTCGTCCGTTCAGACTGAAGTTCGCTGCCCATTCGTAGTCTTTCGGCTTCACCCCTTCGAGCGGCGAAATCGCAAGCTGTTGGTTCCAGATCTAAAGAAATTGCGGCATCGAAATCGCGTGAACGGTCGTGTTAGTTCCAGATCTAACGAAATAGCAGATCTAACGACCCGAGCGGCGGTGCCTTCCTTCTCCCCACGAACGAACAGATGGCGAACGAACGATGAAGCCTCCACGAACGGAGCTATTGGTTCTAGATCTGACAAAGCCCCCACGAACGGATGGCGAACGGAGTTGTTGGTTCTAGATCTGACGAAGCCCCCACGAACGGACGGCGAACGGACTACGAATGGCAGAGGAGAAGAAGAGAAGAGAAGAGAAGAGAATAGGGAAAGTGAAGAAGAAGATGGTGGTGGTGGTGGTGGGAGTGATGAAGAAGAAGATGAAAGTGAAGAAGAAGATGAAAGTGAAGAAGAAGAATAA

Protein sequence

MSGGLGWIVRDSIVEWRGRFQESLVEADSSKANSILNHHSDDISEARVLAVKVTDLANRVGEVDFTFSPRESNVEAHSLAHFAAALDVSGNSSSIVLDSSNSEDEFFCKEALPPLMNSSFFRKSSCSSVGCVRLSSVQTEVRCPFVVFRLHPFERRNRKLLVPDLKKLRHRNRVNGRVSSRSNEIADLTTRAAVPSFSPRTNRWRTNDEASTNGAIGSRSDKAPTNGWRTELLVLDLTKPPRTDGERTTNGRGEEEKRREENRESEEEDGGGGGGSDEEEDESEEEDESEEEE

Homology

The following BLAST results are available for this feature:

BLAST of Lag0007739 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0007739 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0007739 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0007739 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 16..83 e-value: 2.4E-6 score: 27.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..270
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007739.1	Lag0007739.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity