Lag0007737 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007737
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon protein
Location	chr9: 4017362 .. 4017679 (-)
RNA-Seq Expression	Lag0007737
Synteny	Lag0007737

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATGGCTACACCGGGATCAGGATCTAGAAAGGAGAAACATGTATGGACGCCCGAGGAGGATGCCGTTCTCGTGCAGTGCCTATTTGACCTCGTCCAAATGGGAGGATGGCGGGGAGATAATGAGACATTTCGCCCGGGATTCCAGAACCAGATTGGGAAGATGATGAAAGAACGATTGCCCGGCTGCAACATTGTTGTCAGTCCAAATATCGAGTCTAGGGTGAAGCTACTGAAAAAACAGTACATGGAAATCGCCGAGATGATGGACCTGCTTGTAGTGGGTTCGGTTGGAACGAGGAGAAGAAGTGTATAG

mRNA sequence

ATGCAGATGGCTACACCGGGATCAGGATCTAGAAAGGAGAAACATGTATGGACGCCCGAGGAGGATGCCGTTCTCGTGCAGTGCCTATTTGACCTCGTCCAAATGGGAGGATGGCGGGGAGATAATGAGACATTTCGCCCGGGATTCCAGAACCAGATTGGGAAGATGATGAAAGAACGATTGCCCGGCTGCAACATTGTTGTCAGTCCAAATATCGAGTCTAGGGTGAAGCTACTGAAAAAACAGTACATGGAAATCGCCGAGATGATGGACCTGCTTGTAGTGGGTTCGGTTGGAACGAGGAGAAGAAGTGTATAG

Coding sequence (CDS)

ATGCAGATGGCTACACCGGGATCAGGATCTAGAAAGGAGAAACATGTATGGACGCCCGAGGAGGATGCCGTTCTCGTGCAGTGCCTATTTGACCTCGTCCAAATGGGAGGATGGCGGGGAGATAATGAGACATTTCGCCCGGGATTCCAGAACCAGATTGGGAAGATGATGAAAGAACGATTGCCCGGCTGCAACATTGTTGTCAGTCCAAATATCGAGTCTAGGGTGAAGCTACTGAAAAAACAGTACATGGAAATCGCCGAGATGATGGACCTGCTTGTAGTGGGTTCGGTTGGAACGAGGAGAAGAAGTGTATAG

Protein sequence

MQMATPGSGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEMMDLLVVGSVGTRRRSV

Homology

[Close]

BLAST of Lag0007737 vs. NCBI nr
Match: TYK26918.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 8  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIV 67
          S SR  KH WT EE+A L++CL +LV +GGWR DNETFRPG+ NQ+ +MM  ++PGCNI 
Sbjct: 3  SSSRLPKHSWTKEEEAGLIECLAELVNVGGWRSDNETFRPGYLNQLARMMAFKIPGCNI- 62

Query: 68 VSPNIESRVKLLKKQYMEIAEM 90
           +  I+SR+KL+K+ +  +AEM
Sbjct: 63 HALTIDSRIKLMKRMFHALAEM 83

[Close]

BLAST of Lag0007737 vs. NCBI nr
Match: TYJ99726.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 8  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIV 67
          S SR  KH WT EE+A LV+CL +LV  GGWR DN TFRPG+ NQ+ +MM  ++PGCNI 
Sbjct: 3  SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCNIH 62

Query: 68 VSPNIESRVKLLKKQYMEIAEM 90
           S  I+SR+KL+K+ +  +AEM
Sbjct: 63 AS-TIDSRIKLMKRMFHALAEM 83

[Close]

BLAST of Lag0007737 vs. NCBI nr
Match: KAA0047233.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 8  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIV 67
          S SR  KH WT EE+A LV+CL +LV  GGWR DN TFRPG+ NQ+ +MM  ++PGCNI 
Sbjct: 3  SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCNIH 62

Query: 68 VSPNIESRVKLLKKQYMEIAEM 90
           S  I+SR+KL+K+ +  +AEM
Sbjct: 63 AS-TIDSRIKLMKRMFHALAEM 83

[Close]

BLAST of Lag0007737 vs. NCBI nr
Match: TYK10662.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 8  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIV 67
          S SR  KH WT EE+A LV+CL +LV  GGWR DN TFRPG+ NQ+ +MM  ++PGCNI 
Sbjct: 3  SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCNIH 62

Query: 68 VSPNIESRVKLLKKQYMEIAEM 90
           S  I+SR+KL+K+ +  +AEM
Sbjct: 63 AS-TIDSRIKLMKRMFHALAEM 83

[Close]

BLAST of Lag0007737 vs. NCBI nr
Match: KAA0026116.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-18
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 8  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIV 67
          S SR  KH WT EE+A LV+CL +LV  GGWR DN TFRPG+ NQ+ +MM  ++PGCNI 
Sbjct: 3  SSSRLPKHTWTKEEEAGLVECLVELVNPGGWRSDNGTFRPGYLNQLARMMAFKIPGCNIH 62

Query: 68 VSPNIESRVKLLKKQYMEIAEM 90
           S  I+SR+KL+K+ +  +AEM
Sbjct: 63 AS-TIDSRIKLMKRMFHALAEM 83

The following BLAST results are available for this feature:

BLAST of Lag0007737 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26918.1	1.4e-18	54.88	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ99726.1	1.4e-18	56.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047233.1	1.4e-18	56.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK10662.1	1.4e-18	56.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0026116.1	1.8e-18	56.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0007737 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 17..90 e-value: 3.1E-5 score: 24.9
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 9..90
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 9..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007737.1	Lag0007737.1	mRNA