Lag0007718 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0007718
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr9: 3689695 .. 3692239 (-)
RNA-Seq ExpressionLag0007718
SyntenyLag0007718
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACAACCTTATGACGTCGAAGGTGATTTGTACAAGTATGGAATGTCTGTCACTTATGATAGGTGGGTATATCATGGAGAAACTCCAGACTTATCTGTGTATTTGAATCCTAAACCCAAAGAACCTGAGACTTCCGAAAATATAGATAAGGAAAATGAAATGGTTGAATTATTGAATGATGTAGCAGGAGTGAATGAATATTTGGATGAAGAGAACACAATTAGGGTTGAAACAAGTGATGGCGTGGGAGGTAGGAATAATAAGTTTCAATCATTGTTTGATGAAGTCAATGCAGAATTATACCCTGGATCTAATATTTCAAGACTAACTTTTTTGGTAAAACTAATGCATATCAAAGTACTTAATCATTGGAGCAATAAGTCATTTGATATGTTATTGCAATTACTGAAAGAAGTCATATGATATTTTCCATATGTTTTGTGCTTATGTATGTGTGATTCTCTCAATGAGAATGATCGTTATATTTTTTGTGGTTGATTGTGGGGAGAGTGTTTGTTCTTCAGGATGAATTGAGGGGGGGGGGTGTTTTTAACTTGAGGATGAATTGAGGAGAAGAGGGAGTTGGTTGTTCATTATAGATTGTCAAATATATCTTTTTCATAGGTTTTTATTGTGTTTTGAGGAGGGGGAGTAATATTGGTGACTAGAACTTTGAATTTAAGTTCATTTTTTAGGTTGTGACTCTGATTACACTGTTTGAGACTATGTTTTCATATGTTTTGTGCCTATGTATGTGTGATTCTCTCAATGAGAATGGTCGTTATGTTTATTTGTGGTTGACTGTGGGGAGAATGTTTCTTCTTGAGGATGAATTGAGGGGGGGGGGGGGGGAGGAAGTGTGTTTTCAACTTGAGGATGAATTGAGGAGGAGAGAGGGTCGGTTGTTCATTATAGATTGTCAAATATATCTTTTTCATAGGTTTTTATTGAGTTTTGAGGACATGGTGTAATATTGGTGATTGAAACTTGGAATTTAAGTTCATTTTTAGGTAGGAACTTTGATTACACTGTTTGAGGTTCTTTTTAACTTAAGTTGGGTGAAAAGTTTTCAACGAAAACCTTGTATTACGATTGTAACTTAAAATGTTATTATTATAGTGATGCTCTTTGTGAATATGGTTAAGAATAATTTGTTGTTCATGTGTACTTATGCATTTGTAAAATCTTGTTTATTTGCAGGATTGAAGTGTGTTTTCAACTTGAGGATGAATTGAGGAGGAGAGAGGGTCGGTTGTTCATTATAGATTGTCAAATATATCTTTTTCATAGGTTTTTATTGAGTTTTGAGGACATGGTGTAATATTGGTGATTGAAACTTGGAATTTAAGTTCATTTTTAGGTAGGAACTTTGATTACACTGTTTGAGGTTCTTTTTAACTTAAGTTGGGTGAAAAGTTTTCAACGAAAACCTTGTATTACGATTGTAACTTAAAATGTTATTATTATAGTGATGCTCTTTGTGAATATGGTTAAGAATAATTTGTTGTTCATGTGTACTTATGCATTTGTAAAATCTTGTTTATTTGCAGGATTGAAGTAAACTTCCTGACGACAACAATGACCAAACGAATATTACTTTTTTGTAGCTAACATAGACTTAGTACATGTCAGTATTTGTATTTTGATACTTGTTTGGTCTTTATTTTTTGGAACTCTTAAACTTAGCAAGCCTTTAGGTAAGATGTTCATGTGTGAAACATACTTTTGTTGAATGCTTAATTATTTGTATAAAGTGGATGAATGTTTTGGTAAAATATATATTTTTTATATGTTTAATGCTTATTTATATAAAATGTAAATCAGGACAATTGAAATGAAATCGAGCCATTATATGGCACAACTAAAAATATATATTTTTTTTATTGTCAATCGTTTGAGTGACGAATTTTGGGTTTTCGCGGCAAATGAATTAAAAACTGCGACGAAAATAAACACTTTCGACGCAACGCTTGCGACAAAAATTGTCTTTTTGCTAAGATCGACATCTACGACGCAAAACTCATTTTCGTCGCAAAGCGTGCGACGATTTTCCATTTTTCGTCGCATTTTCGTTGCGACGAATGCTTGCTTTAGTCGCAAACTTTTTAATACGAAACTTGCGACATTTTTTTTATTTTTCGTCGCACGTTGCGACGCATTGAAATATTTCGTCGCAGGTTGCGACACATTGTAATATTTCGTCGCAACGTGCAACGCATTTGGAATTTTCGACGCAAAAACCTGCTTGCGACACATCTTTAGCGACGTTTTTTGCGGCTAATTTGTTTTCGCCGCTAATGAATCTTTGCGTCGAATATATACTTTTTGCGACGAAAAGATTTCGACGCTAAAAGTCTGATTTCTTGTAGTGGAAGAAAAGGGGAGAAAGAAAGAAAAAAAAAATATTCCGACCGCCGCCGCCGCTGCTCGCCGGCAGCCGGTGGCGGCCCGTGGCGGCCGGCCACCGGAGCTGATGAAGAAGGAGATAAGAAGGTTGAAAGAAGATGGGGAGAAGAAAGGAAGAGAGAGAGAAAGAATTTAA

mRNA sequence

ATGAAACAACCTTATGACGTCGAAGGTGATTTGTACAAGTATGGAATGTCTGTCACTTATGATAGGTGGGTATATCATGGAGAAACTCCAGACTTATCTGTGTATTTGAATCCTAAACCCAAAGAACCTGAGACTTCCGAAAATATAGATAAGGAAAATGAAATGGTTGAATTATTGAATGATGTAGCAGGAGTGAATGAATATTTGGATGAAGAGAACACAATTAGGGTTGAAACAAGTGATGGCGTGGGAGTGGAAGAAAAGGGGAGAAAGAAAGAAAAAAAAAATATTCCGACCGCCGCCGCCGCTGCTCGCCGGCAGCCGGTGGCGGCCCGTGGCGGCCGGCCACCGGAGCTGATGAAGAAGGAGATAAGAAGGTTGAAAGAAGATGGGGAGAAGAAAGGAAGAGAGAGAGAAAGAATTTAA

Coding sequence (CDS)

ATGAAACAACCTTATGACGTCGAAGGTGATTTGTACAAGTATGGAATGTCTGTCACTTATGATAGGTGGGTATATCATGGAGAAACTCCAGACTTATCTGTGTATTTGAATCCTAAACCCAAAGAACCTGAGACTTCCGAAAATATAGATAAGGAAAATGAAATGGTTGAATTATTGAATGATGTAGCAGGAGTGAATGAATATTTGGATGAAGAGAACACAATTAGGGTTGAAACAAGTGATGGCGTGGGAGTGGAAGAAAAGGGGAGAAAGAAAGAAAAAAAAAATATTCCGACCGCCGCCGCCGCTGCTCGCCGGCAGCCGGTGGCGGCCCGTGGCGGCCGGCCACCGGAGCTGATGAAGAAGGAGATAAGAAGGTTGAAAGAAGATGGGGAGAAGAAAGGAAGAGAGAGAGAAAGAATTTAA

Protein sequence

MKQPYDVEGDLYKYGMSVTYDRWVYHGETPDLSVYLNPKPKEPETSENIDKENEMVELLNDVAGVNEYLDEENTIRVETSDGVGVEEKGRKKEKKNIPTAAAAARRQPVAARGGRPPELMKKEIRRLKEDGEKKGRERERI
Homology
[Close]
BLAST of Lag0007718 vs. NCBI nr
Match: CAN78763.1 (hypothetical protein VITISV_003315 [Vitis vinifera])

HSP 1 Score: 54.7 bits (130), Expect = 7.6e-04
Identity = 26/72 (36.11%), Postives = 40/72 (55.56%), Query Frame = 0 

Query: 2   KQPYDVEGDLYKYGMSVTYDRWVYHGETPDLSVYLNPKPKEPE---------TSENIDKE 61
           K  YD+E  LYKYG++ TY RW++HGE   +          P           ++++D +
Sbjct: 63  KSIYDIETHLYKYGIATTYQRWIFHGEKVSVDYNERNDMSGPNRLDHHETFTVNDDVDDD 122

Query: 62  NEMVELLNDVAG 65
           +EM+ELL+DV G
Sbjct: 123 DEMIELLSDVCG 134

[Close]
BLAST of Lag0007718 vs. NCBI nr
Match: RVW68394.1 (hypothetical protein CK203_061680 [Vitis vinifera])

HSP 1 Score: 54.3 bits (129), Expect = 9.9e-04
Identity = 31/88 (35.23%), Postives = 46/88 (52.27%), Query Frame = 0 

Query: 2   KQPYDVEGDLYKYGMSVTYDRWVYHGETPDLSVYLNPKPKEP---------ETSENIDKE 61
           K  YD+E  LYKYG++ TY RW++HGE   +          P         + ++++D +
Sbjct: 50  KSIYDIETHLYKYGIATTYQRWIFHGEKVSVDYNERNDMSGPNRLNHHETFDVNDDVDDD 109

Query: 62  NEMVELLNDVAGVNEYLD-EENTIRVET 80
           +EM+ELL+DV G     D    T  VET
Sbjct: 110 DEMIELLSDVCGPIPNRDATSETTNVET 137

The following BLAST results are available for this feature:
BLAST of Lag0007718 vs. NCBI nr
Match NameE-valueIdentityDescription
CAN78763.17.6e-0436.11hypothetical protein VITISV_003315 [Vitis vinifera][more]
RVW68394.19.9e-0435.23hypothetical protein CK203_061680 [Vitis vinifera][more]
BLAST of Lag0007718 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0007718.1Lag0007718.1mRNA