Lag0007687 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007687
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	GDP-mannose transporter, putative
Location	chr9: 3094216 .. 3094916 (-)
RNA-Seq Expression	Lag0007687
Synteny	Lag0007687

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAGCATTCTGGACCTTTTCGACCTATAGTGGTGCTTTCTGGGCAGCACTCAGGACTCCCTCATTCAAACTCTGGTCACAGCTTCAAAAGGAAGTCTAAATTATCACAGATTTACATTTTTTCAGCCACAAATTTTGGATGTTTAGTTAGAGTACGTAAGAATTATTGAGGGGATAACTAGGCCAAGGAGTGAAACCAAGGACTTCGCAGTTTTCCTAGCTTTTCTAGATGATGTTCCTTGCATAAATATCATTATAAATCGTTTCTCTATTTTTTTTATTCAAATAAATTGGTCAACTGTTTTGTGAGGTTCTTCCACCTTTGGAGAGGGTCAGATATCTTATCCTTCGTCTCAGATTTCCTAGCTTTAGGCTATCATGATTTTTCTTTTATGAAAGTTAACAAGGGCATTTTTTTGGTTCTTCCTTGAGCCACATTATGGTGGAGTGTTCGTTTTTCTTTTATAGAAATTTTCTTTTATTATTTTCCCCATAAACTTAATTATCTCACGATTTGAAATTGTTCTTTTCTTTAGATATTGTTGGCTCAGCTATTGGGTTTGCTGTTTTCATGGCCGTTATCTCCTCTTGGGCCTTGACATTTGCCATTGGAGGAGATCGCCTCTTTGGACCTGTTTGGGGTAAACTAGTGATGTACAACCTTGCTGACAAATTAGGATTGACAGGTTGGAGCTAG

mRNA sequence

ATGGTGCAGCATTCTGGACCTTTTCGACCTATAGTGGTGCTTTCTGGGCAGCACTCAGGACTCCCTCATTCAAACTCTGGTCACAGCTTCAAAAGGAAGTCTAAATTATCACAGATTTACATTTTTTCAGCCACAAATTTTGGATGTTTAGTTAGAGTACATATTGTTGGCTCAGCTATTGGGTTTGCTGTTTTCATGGCCGTTATCTCCTCTTGGGCCTTGACATTTGCCATTGGAGGAGATCGCCTCTTTGGACCTGTTTGGGGTAAACTAGTGATGTACAACCTTGCTGACAAATTAGGATTGACAGGTTGGAGCTAG

Coding sequence (CDS)

ATGGTGCAGCATTCTGGACCTTTTCGACCTATAGTGGTGCTTTCTGGGCAGCACTCAGGACTCCCTCATTCAAACTCTGGTCACAGCTTCAAAAGGAAGTCTAAATTATCACAGATTTACATTTTTTCAGCCACAAATTTTGGATGTTTAGTTAGAGTACATATTGTTGGCTCAGCTATTGGGTTTGCTGTTTTCATGGCCGTTATCTCCTCTTGGGCCTTGACATTTGCCATTGGAGGAGATCGCCTCTTTGGACCTGTTTGGGGTAAACTAGTGATGTACAACCTTGCTGACAAATTAGGATTGACAGGTTGGAGCTAG

Protein sequence

MVQHSGPFRPIVVLSGQHSGLPHSNSGHSFKRKSKLSQIYIFSATNFGCLVRVHIVGSAIGFAVFMAVISSWALTFAIGGDRLFGPVWGKLVMYNLADKLGLTGWS

Homology

[Close]

BLAST of Lag0007687 vs. NCBI nr
Match: XP_022931973.1 (probable gamma-secretase subunit PEN-2 [Cucurbita moschata])

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 51  VRVHIVGSAIGFAVFMAVISSWALTFAIGGDRLFGPVWGKLVMYNLADKLGLTGWS 107
           +R +IVGSAIGFAVFMA+ISSWALTFAIGG+RLFGPVW KLVMYNLADKLGLTGWS
Sbjct: 82  IRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS 137

[Close]

BLAST of Lag0007687 vs. NCBI nr
Match: XP_022971629.1 (probable gamma-secretase subunit PEN-2 [Cucurbita maxima])

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 51  VRVHIVGSAIGFAVFMAVISSWALTFAIGGDRLFGPVWGKLVMYNLADKLGLTGWS 107
           +R +IVGSAIGFAVFMA+ISSWALTFAIGG+RLFGPVW KLVMYNLADKLGLTGWS
Sbjct: 82  IRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS 137

[Close]

BLAST of Lag0007687 vs. NCBI nr
Match: KAG7011118.1 (putative gamma-secretase subunit PEN-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 51  VRVHIVGSAIGFAVFMAVISSWALTFAIGGDRLFGPVWGKLVMYNLADKLGLTGWS 107
           +R +IVGSAIGFAVFMA+ISSWALTFAIGG+RLFGPVW KLVMYNLADKLGLTGWS
Sbjct: 82  IRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS 137

[Close]

BLAST of Lag0007687 vs. NCBI nr
Match: XP_023007265.1 (probable gamma-secretase subunit PEN-2 [Cucurbita maxima])

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-19
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 51  VRVHIVGSAIGFAVFMAVISSWALTFAIGGDRLFGPVWGKLVMYNLADKLGLTGWS 107
           +R +IVGSAIGFAVFMA+ISSWALTF+IGG+RLFGPVW KLVMYNLADKLGLTGWS
Sbjct: 83  IRPYIVGSAIGFAVFMAIISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS 138

[Close]

BLAST of Lag0007687 vs. NCBI nr
Match: XP_022946973.1 (probable gamma-secretase subunit PEN-2 [Cucurbita moschata] >KAG7035284.1 putative gamma-secretase subunit PEN-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 48/56 (85.71%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 51  VRVHIVGSAIGFAVFMAVISSWALTFAIGGDRLFGPVWGKLVMYNLADKLGLTGWS 107
           +R +IVGSAIGFA+FMA+ISSWALTF+IGG+RLFGPVW KLVMYNLADKLGLTGWS
Sbjct: 83  IRPYIVGSAIGFAIFMAIISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS 138

[Close]

BLAST of Lag0007687 vs. ExPASy Swiss-Prot
Match: Q9FY84 (Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana OX=3702 GN=At5g09310 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-14
Identity = 35/54 (64.81%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 51  VRVHIVGSAIGFAVFMAVISSWALTFAIGGDRLFGPVWGKLVMYNLADKLGLTG 105
           +R ++V SAIGF+VF A++S+WALTF+IGG++LFGP++ KLVMYN+AD+LGL+G
Sbjct: 91  IRNYVVRSAIGFSVFTALLSAWALTFSIGGEQLFGPLYDKLVMYNVADRLGLSG 144

The following BLAST results are available for this feature:

BLAST of Lag0007687 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931973.1	1.3e-19	89.29	probable gamma-secretase subunit PEN-2 [Cucurbita moschata]	[more]
XP_022971629.1	1.3e-19	89.29	probable gamma-secretase subunit PEN-2 [Cucurbita maxima]	[more]
KAG7011118.1	1.3e-19	89.29	putative gamma-secretase subunit PEN-2 [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_023007265.1	2.2e-19	87.50	probable gamma-secretase subunit PEN-2 [Cucurbita maxima]	[more]
XP_022946973.1	2.8e-19	85.71	probable gamma-secretase subunit PEN-2 [Cucurbita moschata] >KAG7035284.1 putati...	[more]

BLAST of Lag0007687 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FY84	2.2e-14	64.81	Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana OX=3702 GN=At5g09...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019379	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit	PFAM	PF10251	PEN-2	coord: 50..96 e-value: 1.3E-7 score: 31.9
IPR019379	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit	PANTHER	PTHR16318	GAMMA-SECRETASE SUBUNIT PEN-2	coord: 48..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007687.1	Lag0007687.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007219	Notch signaling pathway
cellular_component	GO:0070765	gamma-secretase complex
cellular_component	GO:0005798	Golgi-associated vesicle
cellular_component	GO:0016021	integral component of membrane