Lag0007649 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007649
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DELLA protein
Location	chr9: 2374285 .. 2374644 (+)
RNA-Seq Expression	Lag0007649
Synteny	Lag0007649

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGCTGAACTAAACAGCCCCCTTCAATCCCAACGAATCGACGACCCTGTTCTCGCCATAGCCGAATCGACTTCCTCCTCTGTCGCCGCCTTCGTCGACGACTCCGAGTACGATTTCCGTGCGATTCCGGGCGTTGCTGCTTACCCCCAGATCGATTCCACCAACCCCGAAAAGCGATTCAAGAAATCTGACTCTGAATCGCTTCTTGTTCCTGCTTCTTCTTCTTCTTCGTCGTCGGAGCCGTCACACACAGTGGTTCTGCTGGACTCTGTCGAGACCGACATCCTTCTTGTCCACTCGTCGACTGACTTTTTTCTTCTTCTAACTCTCTCACCGACGACGACTCTGCTCGCGTGA

mRNA sequence

ATGCTCGCTGAACTAAACAGCCCCCTTCAATCCCAACGAATCGACGACCCTGTTCTCGCCATAGCCGAATCGACTTCCTCCTCTGTCGCCGCCTTCGTCGACGACTCCGAGTACGATTTCCGTGCGATTCCGGGCGTTGCTGCTTACCCCCAGATCGATTCCACCAACCCCGAAAAGCGATTCAAGAAATCTGACTCTGAATCGCTTCTTGTTCCTGCTTCTTCTTCTTCTTCGTCGTCGGAGCCGTCACACACAGTGGTTCTGCTGGACTCTGTCGAGACCGACATCCTTCTTGTCCACTCGTCGACTGACTTTTTTCTTCTTCTAACTCTCTCACCGACGACGACTCTGCTCGCGTGA

Coding sequence (CDS)

ATGCTCGCTGAACTAAACAGCCCCCTTCAATCCCAACGAATCGACGACCCTGTTCTCGCCATAGCCGAATCGACTTCCTCCTCTGTCGCCGCCTTCGTCGACGACTCCGAGTACGATTTCCGTGCGATTCCGGGCGTTGCTGCTTACCCCCAGATCGATTCCACCAACCCCGAAAAGCGATTCAAGAAATCTGACTCTGAATCGCTTCTTGTTCCTGCTTCTTCTTCTTCTTCGTCGTCGGAGCCGTCACACACAGTGGTTCTGCTGGACTCTGTCGAGACCGACATCCTTCTTGTCCACTCGTCGACTGACTTTTTTCTTCTTCTAACTCTCTCACCGACGACGACTCTGCTCGCGTGA

Protein sequence

MLAELNSPLQSQRIDDPVLAIAESTSSSVAAFVDDSEYDFRAIPGVAAYPQIDSTNPEKRFKKSDSESLLVPASSSSSSSEPSHTVVLLDSVETDILLVHSSTDFFLLLTLSPTTTLLA

Homology

[Close]

BLAST of Lag0007649 vs. NCBI nr
Match: XP_004145854.1 (DELLA protein GAI [Cucumis sativus] >KGN57774.1 hypothetical protein Csa_009839 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 6.3e-28
Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MLAELNSPLQSQR-IDDPVLAIAESTSSSVAA-FVDDSEYDFRAIPGVAAYPQIDSTNPE 60
           MLAELN+PLQSQ  I DPVLAIAESTS SVAA F DDSEYD RAIPGVAA+PQIDS+NP 
Sbjct: 89  MLAELNTPLQSQGIIHDPVLAIAESTSFSVAADFTDDSEYDLRAIPGVAAFPQIDSSNPR 148

Query: 61  KRFKKSDSESLLVPAS---SSSSSSEPSHTVVLLDSVETDILLVHS 102
           KRFKKSDSESL V AS   SSSSSSEPS +VVL+DS ET + LVHS
Sbjct: 149 KRFKKSDSESLPVTASCSTSSSSSSEPSRSVVLVDSAETGVRLVHS 194

[Close]

BLAST of Lag0007649 vs. NCBI nr
Match: CCG14222.1 (gibberellin DELLA protein [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 6.3e-28
Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MLAELNSPLQSQR-IDDPVLAIAESTSSSVAA-FVDDSEYDFRAIPGVAAYPQIDSTNPE 60
           MLAELN+PLQSQ  I DPVLAIAESTS SVAA F DDSEYD RAIPGVAA+PQIDS+NP 
Sbjct: 89  MLAELNTPLQSQGIIHDPVLAIAESTSFSVAADFTDDSEYDLRAIPGVAAFPQIDSSNPR 148

Query: 61  KRFKKSDSESLLVPAS---SSSSSSEPSHTVVLLDSVETDILLVHS 102
           KRFKKSDSESL V AS   SSSSSSEPS +VVL+DS ET + LVHS
Sbjct: 149 KRFKKSDSESLPVTASCSTSSSSSSEPSRSVVLVDSAETGVRLVHS 194

[Close]

BLAST of Lag0007649 vs. NCBI nr
Match: XP_008457015.1 (PREDICTED: DELLA protein GAI-like [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 82/106 (77.36%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MLAELNSPLQSQR-IDDPVLAIAESTSSSV-AAFVDDSEYDFRAIPGVAAYPQIDSTNPE 60
           ML ELN+PLQSQ  I DPVLAIAESTS SV AAF +DSEYD RAIPGVAA+PQIDS+NP 
Sbjct: 89  MLVELNTPLQSQGIIHDPVLAIAESTSFSVAAAFTNDSEYDLRAIPGVAAFPQIDSSNPR 148

Query: 61  KRFKKSDSESLLVPAS---SSSSSSEPSHTVVLLDSVETDILLVHS 102
           KRFKKSDSESLLV AS   SSSSSSEPS +VVL+DS ET + LVHS
Sbjct: 149 KRFKKSDSESLLVTASSSTSSSSSSEPSRSVVLVDSAETGVRLVHS 194

[Close]

BLAST of Lag0007649 vs. NCBI nr
Match: KAA0032820.1 (DELLA protein GAI-like [Cucumis melo var. makuwa] >TYK30378.1 DELLA protein GAI-like [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 82/106 (77.36%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MLAELNSPLQSQR-IDDPVLAIAESTSSSV-AAFVDDSEYDFRAIPGVAAYPQIDSTNPE 60
           ML ELN+PLQSQ  I DPVLAIAESTS SV AAF +DSEYD RAIPGVAA+PQIDS+NP 
Sbjct: 89  MLVELNTPLQSQGIIHDPVLAIAESTSFSVTAAFTNDSEYDLRAIPGVAAFPQIDSSNPR 148

Query: 61  KRFKKSDSESLLVPAS---SSSSSSEPSHTVVLLDSVETDILLVHS 102
           KRFKKSDSESLLV AS   SSSSSSEPS +VVL+DS ET + LVHS
Sbjct: 149 KRFKKSDSESLLVTASSSTSSSSSSEPSRSVVLVDSAETGVRLVHS 194

[Close]

BLAST of Lag0007649 vs. NCBI nr
Match: XP_038902950.1 (DELLA protein 1-like [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-27
Identity = 81/105 (77.14%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MLAELNSPLQSQ-RIDDPVLAIAESTSSSV-AAFVDDSEYDFRAIPGVAAYPQIDSTNPE 60
           MLAELN+PLQSQ  I DPVLAIAES+SSSV AAF DDSEYD RAIPG AA+PQ+DSTNP 
Sbjct: 91  MLAELNTPLQSQGMIHDPVLAIAESSSSSVLAAFTDDSEYDLRAIPGFAAFPQLDSTNPR 150

Query: 61  KRFKKSDSESLLVPA--SSSSSSSEPSHTVVLLDSVETDILLVHS 102
           KRFKKSDSESL   A  SSSSSSSEPS +VVL+DS ET + LVHS
Sbjct: 151 KRFKKSDSESLPASASSSSSSSSSEPSRSVVLVDSAETGVRLVHS 195

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BLAST of Lag0007649 vs. ExPASy Swiss-Prot
Match: A0A396IUP1 (DELLA protein 1 OS=Medicago truncatula OX=3880 GN=DELLA1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-08
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 1   MLAELNSPLQSQRIDDPVLAIAESTSSSVAAFVDDSEYDFRAIPGVAAYPQIDSTNPEKR 60
           ML ELN    S +I+DP+ ++  S+      F DDSEYD  AIPG+AAYP  +     KR
Sbjct: 120 MLTELNP--DSSQINDPLASLGSSSEILNNTFNDDSEYDLSAIPGMAAYPPQEENTAAKR 179

Query: 61  FKK-SDSESLLVPASSSSSSSEPSHTVVLLDSVETDILLVHS 102
            K  S+ ES      S   + E +  VVL+D+ ET + LVH+
Sbjct: 180 MKTWSEPESEPAVVMSPPPAVENTRPVVLVDTQETGVRLVHT 219

[Close]

BLAST of Lag0007649 vs. ExPASy Swiss-Prot
Match: Q84TQ7 (DELLA protein GAI OS=Gossypium hirsutum OX=3635 GN=GAI PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-06
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 24  STSSSVAAFVDDSEYDFRAIPGVAAYPQIDSTNPEKRFKKSDSESLLVPASSSSSSSEPS 83
           ST++    F DDSEYD RAIPGVAAYP + S +P     +  +++     SSSSSSS  +
Sbjct: 102 STTTPDPNFNDDSEYDLRAIPGVAAYPPVKS-DPGLEITRKRAKT----ESSSSSSSTTT 161

Query: 84  HTVVLLDSVETDILLVHS 102
             VVL+DS E  + LVH+
Sbjct: 162 RPVVLIDSQEAGVRLVHT 174

[Close]

BLAST of Lag0007649 vs. ExPASy Swiss-Prot
Match: Q8GXW1 (DELLA protein RGL2 OS=Arabidopsis thaliana OX=3702 GN=RGL2 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-05
Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 1   MLAELNSPLQSQRIDDPVLAIAESTSSSVAAFVDDSEYDFRAIPGVAAYPQIDSTNPEKR 60
           ML+ELN+P             A S   +  + VD SEYD RAIPG++A+P+      E+ 
Sbjct: 101 MLSELNNP-------------ASSDLDTTRSCVDRSEYDLRAIPGLSAFPK-----EEEV 160

Query: 61  FKKSDSESLLVPASSSSSSSEPSHTVVLLDSVETDILLVHS 102
           F +  S   +   S   SS E + +VVL+DS ET + LVH+
Sbjct: 161 FDEEASSKRIRLGSWCESSDESTRSVVLVDSQETGVRLVHA 183

The following BLAST results are available for this feature:

BLAST of Lag0007649 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145854.1	6.3e-28	78.30	DELLA protein GAI [Cucumis sativus] >KGN57774.1 hypothetical protein Csa_009839 ...	[more]
CCG14222.1	6.3e-28	78.30	gibberellin DELLA protein [Cucumis sativus]	[more]
XP_008457015.1	1.1e-27	77.36	PREDICTED: DELLA protein GAI-like [Cucumis melo]	[more]
KAA0032820.1	1.1e-27	77.36	DELLA protein GAI-like [Cucumis melo var. makuwa] >TYK30378.1 DELLA protein GAI-...	[more]
XP_038902950.1	1.4e-27	77.14	DELLA protein 1-like [Benincasa hispida]	[more]

BLAST of Lag0007649 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A396IUP1	3.4e-08	41.18	DELLA protein 1 OS=Medicago truncatula OX=3880 GN=DELLA1 PE=1 SV=1	[more]
Q84TQ7	1.9e-06	47.44	DELLA protein GAI OS=Gossypium hirsutum OX=3635 GN=GAI PE=2 SV=1	[more]
Q8GXW1	2.7e-05	37.62	DELLA protein RGL2 OS=Arabidopsis thaliana OX=3702 GN=RGL2 PE=1 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007649.1	Lag0007649.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042538	hyperosmotic salinity response
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway
biological_process	GO:0010187	negative regulation of seed germination
biological_process	GO:2000377	regulation of reactive oxygen species metabolic process
biological_process	GO:2000033	regulation of seed dormancy process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009723	response to ethylene
biological_process	GO:0009863	salicylic acid mediated signaling pathway
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003712	transcription coregulator activity