Lag0007292 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0007292
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
LocationScvUqRz_1244_HRSCAF_2115: 172903 .. 174698 (+)
RNA-Seq ExpressionLag0007292
SyntenyLag0007292
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTTCAAGCCCATTTAAGAAATCCGCTTTGTACCTTATTGTTGACCGAACCGGATGCACGCCAGGCCAAAATTCTCTCTCAGTCACCCTTTGACGAAAGGAACATAAGATCCGAAGTTTACGACTTGATCTTCGAGAAAGTCGACGGATCTGAGTTCTACACGCTTTCATTTTCAAAAGCTTCTGTTAGAAGCTTTCCTACGGTACTTTATTCAGGATGTGCAACAATACGGTCATCTCTCAGCCGTGTATAGAGAATTCCTTTATCATTTCCTTGGCAGATAACACAAATGAAATCGCTTCCCTGACCGCCCATCTTATGAGTCCATTCTTGTCGCAGTTGTTGGTTTGTTGTACTATTCTGTACTGTACCTCTCTCGATTGATAGAAAGACGTTCGGGAGCTGGGAGGGCCTATCGTGAGGGAACTTTCCTTTTCACGGTAGGCGAAGGTAAAGCGGGAGCTGCGTATGTCCACGGTGATCAAGGCAGAGCGACTCCTTTAAAGAGGTTGGTTTTCCCGTTTTCGTTAAAGAAAAAATTGGAGCTCTTGGTTTGGCCGATGTCGATTCGTATGGCAATGCGGACTCGACTCAGGATGAGGATTCCGCTTTGAATAATGCTGCTATGAGCCGAAAGAGCTGGTAAGCTATCTCGCTAAACGAAAGGAAAAAGCACGTACGGGTTGCCCTCGTTGCAAGGGGCGGGGGCCAGCCAAAGAAGGTCAGTCGGACTCGGTTAGGACCCTTGATCCGGTTCAGCTAGGTTCTTCCATGCGATAATGTATGCGTATCGGTATCCTCTTCAGGACCGGTTGCTTCTGATTTTTGTTTATACGTTTGGCCTGCTAAGCCCGCCTTTCTTACCCGGTGTGATTCAATCTTTCAGCTCAAACTTTCCTATCGTCCTTAGGAAAAGGTAGTCGTACTCTTACCTTTTCCTTTTCTTGCCCGAGCCAAGGGATCATTCAGTTTCTACCAAAAAGTTCGCTATCTATTAGTTGCCGTAATCGAATGTATTTCTCATTTCGTGTTAGCTCCTCCAAGAGCTTCCTGGTCCGTAGTAGACGAAACCTTGGACTTCTATCGGACTTTGCGCATTGCCTGGTGAGCTCGCCGTTGAGGGTTGGCCTTACAGGAGATCGAGAGCCTTTCTTTCCCTGCCTGGTATGCTTTCCCGCTTATCGCGCAACTAGCCAACTAGCCAAAGAGAGAGGGAGAGGGATCATGCCAATTTGTATGTGCATTTTGTCCGTCCTGTACTTGCCTGCTTAGCTTTCTTAGCCAACATCTCCGGTTTCCCCCGAACCAAGAGGTCCTGCTTATCCAGACCCAACAGTCACACTGTTTTTCAGCCGAAAGACGGATTTTTTCATAAAGTAGGTTCATAGATCAAGAAAGAATTCAGCTGCTTACAGGGACGGTTACGCGATACGTCTTTTCATACTCGCCTTTTCTTTAACCCTGCTATCAACCTAGCCATTCTCGCTTGTTGCTTTAAGGGGTCTCTCCACTTTCTTTATGTGGGTATATATATAGGCTTCGTCGAGAATACCAAGTCGATCGGCAACTACAGGTTTCGCTCGTCCTGTGAGGGAGGAAGGGTTCCGGGATACCTCGAGGCCCTTTTTCGTATATTTCATCATTAGCAACCCCCTCTTTATCGATCGTCAAAAACATATGCTTGATCAGCTTCCCTAGTGGTATTGCCTTGTAACTGCCCAGCATATACCTTTACTAACTCCACTGCAGCTCCCTCAATGCACTGCTATGCAGAGCGGAGGAAGATACTAA

mRNA sequence

ATGGAACTTCAAGCCCATTTAAGAAATCCGCTTTGTACCTTATTGTTGACCGAACCGGATGCACGCCAGGCCAAAATTCTCTCTCAGTCACCCTTTGACGAAAGGAACATAAGATCCGAAGTTTACGACTTGATCTTCGAGAAAGTCGACGGATCTGAGTTCTACACGCTTTCATTTTCAAAAGCTTCTGTTAGAAGCTTTCCTACGAGCGACTCCTTTAAAGAGGTTGGTTTTCCCGTTTTCGTTAAAGAAAAAATTGGAGCTCTTGGTTTGGCCGATGTCGATTCGTATGGCAATGCGGACTCGACTCAGGATGAGGATTCCGCTTTGAATAATGCTGCTATGAGCCGAAAGAGCTGGTTCTTCCATGCGATAATGTATGCGTATCGGTATCCTCTTCAGGACCGGTTGCTTCTGATTTTTGTTTATACGTTTGGCCTGCTAAGCCCGCCTTTCTTACCCGGTGTGATTCAATCTTTCAGCTCAAACTTTCCTATCGTCCTTAGGAAAAGCTCCTCCAAGAGCTTCCTGGTCCGTAGTAGACGAAACCTTGGACTTCTATCGGACTTTGCGCATTGCCTGGTGAGCTCGCCGTTGAGGGTTGGCCTTACAGGAGATCGAGAGCCTTTCTTTCCCTGCCTGGCTTCGTCGAGAATACCAAGTCGATCGGCAACTACAGGTTTCGCTCGTCCTGTGAGGGAGGAAGGGTTCCGGGATACCTCGAGGCCCTTTTTCCTCCCTCAATGCACTGCTATGCAGAGCGGAGGAAGATACTAA

Coding sequence (CDS)

ATGGAACTTCAAGCCCATTTAAGAAATCCGCTTTGTACCTTATTGTTGACCGAACCGGATGCACGCCAGGCCAAAATTCTCTCTCAGTCACCCTTTGACGAAAGGAACATAAGATCCGAAGTTTACGACTTGATCTTCGAGAAAGTCGACGGATCTGAGTTCTACACGCTTTCATTTTCAAAAGCTTCTGTTAGAAGCTTTCCTACGAGCGACTCCTTTAAAGAGGTTGGTTTTCCCGTTTTCGTTAAAGAAAAAATTGGAGCTCTTGGTTTGGCCGATGTCGATTCGTATGGCAATGCGGACTCGACTCAGGATGAGGATTCCGCTTTGAATAATGCTGCTATGAGCCGAAAGAGCTGGTTCTTCCATGCGATAATGTATGCGTATCGGTATCCTCTTCAGGACCGGTTGCTTCTGATTTTTGTTTATACGTTTGGCCTGCTAAGCCCGCCTTTCTTACCCGGTGTGATTCAATCTTTCAGCTCAAACTTTCCTATCGTCCTTAGGAAAAGCTCCTCCAAGAGCTTCCTGGTCCGTAGTAGACGAAACCTTGGACTTCTATCGGACTTTGCGCATTGCCTGGTGAGCTCGCCGTTGAGGGTTGGCCTTACAGGAGATCGAGAGCCTTTCTTTCCCTGCCTGGCTTCGTCGAGAATACCAAGTCGATCGGCAACTACAGGTTTCGCTCGTCCTGTGAGGGAGGAAGGGTTCCGGGATACCTCGAGGCCCTTTTTCCTCCCTCAATGCACTGCTATGCAGAGCGGAGGAAGATACTAA

Protein sequence

MELQAHLRNPLCTLLLTEPDARQAKILSQSPFDERNIRSEVYDLIFEKVDGSEFYTLSFSKASVRSFPTSDSFKEVGFPVFVKEKIGALGLADVDSYGNADSTQDEDSALNNAAMSRKSWFFHAIMYAYRYPLQDRLLLIFVYTFGLLSPPFLPGVIQSFSSNFPIVLRKSSSKSFLVRSRRNLGLLSDFAHCLVSSPLRVGLTGDREPFFPCLASSRIPSRSATTGFARPVREEGFRDTSRPFFLPQCTAMQSGGRY
Homology
[Close]
BLAST of Lag0007292 vs. NCBI nr
Match: XP_038876762.1 (LOW QUALITY PROTEIN: ribosomal protein S4, mitochondrial [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-14
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 72  SFKEVGFPVFVKEKIGALGLADVDSYGNADSTQDEDSALNNAAMSRKSW 121
           S KEVGFP+FVKEKI ALGLADVDSYGNADSTQDEDSA +NAAMSRKSW
Sbjct: 135 SLKEVGFPIFVKEKIRALGLADVDSYGNADSTQDEDSAFHNAAMSRKSW 183

[Close]
BLAST of Lag0007292 vs. ExPASy TrEMBL
Match: A0A0A0L2K1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G526570 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 38/99 (38.38%), Postives = 49/99 (49.49%), Query Frame = 0 

Query: 167 VLRKSSSKSFLVRSRRNLGLLSDFAHCLVSSPLRVGLTGDREPFFPCLASSRIPSRSATT 226
           VLR    K+ ++   +N+  L+      ++  +R            C    R   +    
Sbjct: 10  VLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRAS----------CFKGLRREYQVDRQ 69

Query: 227 GFARPVREEGFRDTSRPFF---------LPQCTAMQSGG 257
           GFARPVREEG+RDTSRPFF         LPQCTAMQSGG
Sbjct: 70  GFARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGG 98

The following BLAST results are available for this feature:
BLAST of Lag0007292 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038876762.11.3e-1489.80LOW QUALITY PROTEIN: ribosomal protein S4, mitochondrial [Benincasa hispida][more]
BLAST of Lag0007292 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0007292 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2K12.7e-0538.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G526570 PE=4 SV=1[more]
BLAST of Lag0007292 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0007292.1Lag0007292.1mRNA