Lag0007281 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0007281
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionNADH-ubiquinone oxidoreductase chain 2
LocationScvUqRz_1244_HRSCAF_2115: 146117 .. 147287 (-)
RNA-Seq ExpressionLag0007281
SyntenyLag0007281
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGATTTGCTTCACCTATGAGAATTTCTACAGATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGGGTTCGTCATTTATTGACGGATTTTTCTTTCGGAAGAGAGATCCAAAAAGAAAAATTTCTTATGATTGATAGCTCTCTTCTTTAAAGCTTATGCCGTAGAAGCTGACATCAGGCTATTGGCGTTTTATCTGCATCTTCCTGACCAAGACCCAGAAAGAAGGGGTTCGCTTTGTTTGGGATGAACTCGCAAAGACTCGACCCGGGGACTTCCCTCGTAGAGTGGCGTCTTTTATAAGACTCGACTTTCCTTGAGAAGTGGAACTCAAAGGGAACTCAAAAAAAAGAGTTTGAGCTCTTTTGGCTGACTTTTAGCCCTTTCGATAGGGCGGCTATCCGCATGTGTCCCAAAGTGACGTCCATTTTTTGGTAATGGGTATACTCGAGAGAAAAGTTTGGAATTCGACCTCTCCTTATACGCGGGGTCATGGACTCCTTTTTCGTTTAGGATCCCCTTTCGACATGAAATTCTTTATTGAGCCTGGTGTGGAATCACAATCATTACACATTCATTGTTGGTCTGGCTGCTGGTCTAGCGATCCCTCCTAGCCGCCGTCGTCAGTGCAGCCTGCCTGTTGAAGACCGTAACGTAAGTAACTCAGTGCTCTATACGGGGGAAATGAAAGCAGAATTCGTTCGGATCCTCCCACATGTTCAATCTTTTTTTAGCGGTTTCCCCAGAGATCTTTATCATTAATGCAACTTTCATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATTATCCACCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTGCGCGCCTAGGAGGGCAGCGCGCTTTGGGATGCGGAGGAGCTATTATCGCCCAACTCCCTAACCTAATGCGGCACCGGGTTCGGGCCGCGGGGAACCGTAGCATGGGGGGACGTCTAATCCTTTTGCCGCCGCAAGGCTGGCTAATCGTACGCAGCAGGCTCGAAGACCCCTGGTTCTGGAAGGCACATGAGTCCGAACGCTATGTTGAATGTGCGACCGACACTACACTACGTAGGTACCTGTGCAGGTGA

mRNA sequence

ATGGGTTTGATTTGCTTCACCTATGAGAATTTCTACAGATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGGCGATCCCTCCTAGCCGCCGTCGTCAGTGCAGCCTGCCTGTTGAAGACCGTAACTACCTCTAAGAAATATGATTATCCACCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTGCGCGCCTAGGAGGGCAGCGCGCTTTGGGATGCGGAGGAGCTATTATCGCCCAACTCCCTAACCTAATGCGGCACCGGGTTCGGGCCGCGGGGAACCGTAGCATGGGGGGACGTCTAATCCTTTTGCCGCCGCAAGGCTGGCTAATCGTACGCAGCAGGCTCGAAGACCCCTGGTTCTGGAAGGCACATGAGTCCGAACGCTATGTTGAATGTGCGACCGACACTACACTACGTAGGTACCTGTGCAGGTGA

Coding sequence (CDS)

ATGGGTTTGATTTGCTTCACCTATGAGAATTTCTACAGATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGGCGATCCCTCCTAGCCGCCGTCGTCAGTGCAGCCTGCCTGTTGAAGACCGTAACTACCTCTAAGAAATATGATTATCCACCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTGCGCGCCTAGGAGGGCAGCGCGCTTTGGGATGCGGAGGAGCTATTATCGCCCAACTCCCTAACCTAATGCGGCACCGGGTTCGGGCCGCGGGGAACCGTAGCATGGGGGGACGTCTAATCCTTTTGCCGCCGCAAGGCTGGCTAATCGTACGCAGCAGGCTCGAAGACCCCTGGTTCTGGAAGGCACATGAGTCCGAACGCTATGTTGAATGTGCGACCGACACTACACTACGTAGGTACCTGTGCAGGTGA

Protein sequence

MGLICFTYENFYRFFFYSSKLILISVEITALALSYHLYNGRSLLAAVVSAACLLKTVTTSKKYDYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMRHRVRAAGNRSMGGRLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRRYLCR
Homology
[Close]
BLAST of Lag0007281 vs. NCBI nr
Match: PKI40731.1 (hypothetical protein CRG98_038869 [Punica granatum])

HSP 1 Score: 223.0 bits (567), Expect = 1.9e-54
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 58  TTSKKYDYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMRHRVRAAGNRSMGG 117
           +TSKKYDYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMRHRVR AGNRSMGG
Sbjct: 29  STSKKYDYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMRHRVRTAGNRSMGG 88

Query: 118 RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRRYLCR 164
           RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRRYLCR
Sbjct: 89  RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRRYLCR 134

[Close]
BLAST of Lag0007281 vs. NCBI nr
Match: YP_004222261.1 (hypothetical protein BevumaM_p022 [Beta vulgaris subsp. maritima] >YP_004842068.1 hypothetical protein BemaM_p020 [Beta macrocarpa] >CBJ20676.1 hypothetical protein [Beta vulgaris subsp. maritima] >CBL52058.1 hypothetical protein [Beta vulgaris subsp. maritima] >CBX24872.1 hypothetical protein [Beta macrocarpa] >CBX33237.1 hypothetical protein [Beta vulgaris subsp. maritima] >CBX33289.1 hypothetical protein [Beta vulgaris subsp. maritima])

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-53
Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 58  TTSKKYDYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMRHRVRAAGNRSMGG 117
           +TSKKYDYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMRHRVR AGNRSMGG
Sbjct: 29  STSKKYDYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMRHRVRTAGNRSMGG 88

Query: 118 RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRRYLCR 164
           RLILLP QGWLIVRSRLEDPWFWKAHESERYVECATDTTLRRYLCR
Sbjct: 89  RLILLPSQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRRYLCR 134

[Close]
BLAST of Lag0007281 vs. NCBI nr
Match: GAY31810.1 (hypothetical protein CUMW_272290 [Citrus unshiu])

HSP 1 Score: 217.6 bits (553), Expect = 7.8e-53
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 58  TTSKKYDYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMRHRVRAAGNRSMGG 117
           +TSKKYDYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQ PNLMRHRVR AGNRSMG 
Sbjct: 151 STSKKYDYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQSPNLMRHRVRTAGNRSMGR 210

Query: 118 RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRRYLCR 164
           RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRRYLCR
Sbjct: 211 RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRRYLCR 256

[Close]
BLAST of Lag0007281 vs. NCBI nr
Match: TYK27103.1 (hypothetical protein E5676_scaffold77438G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 205.7 bits (522), Expect = 3.1e-49
Identity = 100/106 (94.34%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 58  TTSKKYDYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMRHRVRAAGNRSMGG 117
           +TSKK  YPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMR RVRAAGNRSMGG
Sbjct: 29  STSKKDSYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMRDRVRAAGNRSMGG 88

Query: 118 RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRRYLCR 164
           RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRR  CR
Sbjct: 89  RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRR-CCR 133

[Close]
BLAST of Lag0007281 vs. NCBI nr
Match: KAA0060785.1 (hypothetical protein E6C27_scaffold43479G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 205.7 bits (522), Expect = 3.1e-49
Identity = 100/106 (94.34%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 58  TTSKKYDYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMRHRVRAAGNRSMGG 117
           +TSKK  YPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMR RVRAAGNRSMGG
Sbjct: 29  STSKKDSYPPLVSNVGWLGLLSVARLGGQRALGCGGAIIAQLPNLMRDRVRAAGNRSMGG 88

Query: 118 RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRRYLCR 164
           RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRR  CR
Sbjct: 89  RLILLPPQGWLIVRSRLEDPWFWKAHESERYVECATDTTLRR-CCR 133

[Close]
BLAST of Lag0007281 vs. ExPASy Swiss-Prot
Match: O05000 (NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana OX=3702 GN=ND2 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 3.7e-05
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 58 TTSKKYDYPPLVSNVGWLGLLSV 81
          +TSKKYDYPPL SNVGWLGLLSV
Sbjct: 40 STSKKYDYPPLASNVGWLGLLSV 62

[Close]
BLAST of Lag0007281 vs. ExPASy Swiss-Prot
Match: P26846 (NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha OX=3197 GN=ND2 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 4.8e-05
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 58 TTSKKYDYPPLVSNVGWLGLLSV 81
          +TSKKYDYPPLV NVGWLGLLSV
Sbjct: 30 STSKKYDYPPLVRNVGWLGLLSV 52

[Close]
BLAST of Lag0007281 vs. ExPASy Swiss-Prot
Match: P93401 (NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteroana OX=3950 GN=ND2 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-04
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 58 TTSKKYDYPPLVSNVGWLGLLSV 81
          +TSKK DYPPLVSNVGWLGLLSV
Sbjct: 29 STSKKDDYPPLVSNVGWLGLLSV 51

The following BLAST results are available for this feature:
BLAST of Lag0007281 vs. NCBI nr
Match NameE-valueIdentityDescription
PKI40731.11.9e-5498.11hypothetical protein CRG98_038869 [Punica granatum][more]
YP_004222261.11.6e-5397.17hypothetical protein BevumaM_p022 [Beta vulgaris subsp. maritima] >YP_004842068.... [more]
GAY31810.17.8e-5396.23hypothetical protein CUMW_272290 [Citrus unshiu][more]
TYK27103.13.1e-4994.34hypothetical protein E5676_scaffold77438G00010 [Cucumis melo var. makuwa][more]
KAA0060785.13.1e-4994.34hypothetical protein E6C27_scaffold43479G00020 [Cucumis melo var. makuwa][more]
BLAST of Lag0007281 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O050003.7e-0591.30NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana OX=3702 GN=ND2 PE... [more]
P268464.8e-0591.30NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha OX=3197 GN=ND2 P... [more]
P934011.8e-0491.30NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteroana OX=3950 GN=ND2 PE... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0007281.1Lag0007281.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0009579 thylakoid
molecular_function GO:0008289 lipid binding
molecular_function GO:0015078 proton transmembrane transporter activity