Lag0007256 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0007256
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionZinc transport protein ZntB
LocationScvUqRz_1244_HRSCAF_2115: 78659 .. 79510 (+)
RNA-Seq ExpressionLag0007256
SyntenyLag0007256
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGACAGCCGGGTAGGACTTATTTCGAGATCGATTGCCTTATGTGGCTTTCTCCCACTGGGTTTTTCTGGGTGAGAAGAGATGCTCAAGAAGGAAGCATGGAGTGGAATCCTGGAGACCCCTCTGGCACGCCGGGATGGTGTTCTTTCATCCTTGTTCATTTCTTTTTCCTAGTGAGTGAAGAGGGTTTTATGTTGAGGGGAACCTTACTGTACTTTCTTGGTTCTAGTCTACGTGGTCTTACTAGCCCGAGGGGGGGCCTCGCTCATTCTGTCATTCCATTCCACACTCTGTATCCAGGTTTTGTCAGTCTTCCTGTACGCATAGAGGAGAGGGGTCATTCGGAAGGTGAGTATGCGTTTCCTAGTCTACTTCAACTAGACTCTTACCGAAATTTCTTTATAGAAAGAGTTTCGTCTTGCTTATTTGCTTGATCATTGGCAATGCTTGTAAGCCCTCTTTTAGCGCTTATAGTTACCCTTTTACCACCGCCCAAATCTCATTGAATGTTAATGGATGAGCGATCCCCTTCTGACTCAGAAACCGAGATTACATCTAGTAAGCCAACTCGCAGTCAAAGCATTGATGATTAGTGATCCCCTCTTCTTTGGGAAGATCCGGAATTCATTCAACTGAAACAGAAGCTACTGGCCCGAGTGTACGAGGTGAAGGAGGTCTCTATTCATGAGCAGATGCACCAACTCCATACTCATCTGACTGTTAAAAGGATAGGTCTCTGTCGGTTCGAAGGAAATCGGTTTGTGTATTTTATCTCTCGTAGAGTTGAGATTCCGTTTTTTGTCGGAAGTCCCCCTTGTGGAAGGCAGCTCATGACGTCTTACGCTCGCTAG

mRNA sequence

ATGCGACAGCCGGGTAGGACTTATTTCGAGATCGATTGCCTTATGTGGCTTTCTCCCACTGGGTTTTTCTGGGTGAGAAGAGATGCTCAAGAAGGAAGCATGGAGTGGAATCCTGGAGACCCCTCTGGCACGCCGGGATGGTGTTCTTTCATCCTTGTTCATTTCTTTTTCCTAGTGAGTGAAGAGGGTTTTATGTTGAGGGGAACCTTACTGTACTTTCTTGGTTCTAGTCTACGTGGTCTTACTAGCCCGAGGGGGGGCCTCGCTCATTCTGTCATTCCATTCCACACTCTGTATCCAGGTTTTGTCAGTCTTCCTGTACGCATAGAGGAGAGGGGTCATTCGGAAGATCCGGAATTCATTCAACTGAAACAGAAGCTACTGGCCCGAGTGTACGAGGTGAAGGAGGTCTCTATTCATGAGCAGATGCACCAACTCCATACTCATCTGACTGTTAAAAGGATAGGTCTCTGTCGGTTCGAAGGAAATCGGTTTGTGTATTTTATCTCTCGTAGAGTTGAGATTCCGTTTTTTGTCGGAAGTCCCCCTTGTGGAAGGCAGCTCATGACGTCTTACGCTCGCTAG

Coding sequence (CDS)

ATGCGACAGCCGGGTAGGACTTATTTCGAGATCGATTGCCTTATGTGGCTTTCTCCCACTGGGTTTTTCTGGGTGAGAAGAGATGCTCAAGAAGGAAGCATGGAGTGGAATCCTGGAGACCCCTCTGGCACGCCGGGATGGTGTTCTTTCATCCTTGTTCATTTCTTTTTCCTAGTGAGTGAAGAGGGTTTTATGTTGAGGGGAACCTTACTGTACTTTCTTGGTTCTAGTCTACGTGGTCTTACTAGCCCGAGGGGGGGCCTCGCTCATTCTGTCATTCCATTCCACACTCTGTATCCAGGTTTTGTCAGTCTTCCTGTACGCATAGAGGAGAGGGGTCATTCGGAAGATCCGGAATTCATTCAACTGAAACAGAAGCTACTGGCCCGAGTGTACGAGGTGAAGGAGGTCTCTATTCATGAGCAGATGCACCAACTCCATACTCATCTGACTGTTAAAAGGATAGGTCTCTGTCGGTTCGAAGGAAATCGGTTTGTGTATTTTATCTCTCGTAGAGTTGAGATTCCGTTTTTTGTCGGAAGTCCCCCTTGTGGAAGGCAGCTCATGACGTCTTACGCTCGCTAG

Protein sequence

MRQPGRTYFEIDCLMWLSPTGFFWVRRDAQEGSMEWNPGDPSGTPGWCSFILVHFFFLVSEEGFMLRGTLLYFLGSSLRGLTSPRGGLAHSVIPFHTLYPGFVSLPVRIEERGHSEDPEFIQLKQKLLARVYEVKEVSIHEQMHQLHTHLTVKRIGLCRFEGNRFVYFISRRVEIPFFVGSPPCGRQLMTSYAR
Homology
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BLAST of Lag0007256 vs. NCBI nr
Match: GER38969.1 (zinc transport protein ZntB [Striga asiatica])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-11
Identity = 42/53 (79.25%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 117 DPEFIQLKQKLLARVYEVKEVSIHEQMHQLHTHLTVKRIGLCRFEGNRFVYFI 170
           D EFIQLKQKLLARVYEVKEVSIHEQMHQLHTHLTVKRIG    +   F Y I
Sbjct: 413 DSEFIQLKQKLLARVYEVKEVSIHEQMHQLHTHLTVKRIGEPTDDAYSFEYMI 465

The following BLAST results are available for this feature:
BLAST of Lag0007256 vs. NCBI nr
Match NameE-valueIdentityDescription
GER38969.11.8e-1179.25zinc transport protein ZntB [Striga asiatica][more]
BLAST of Lag0007256 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0007256.1Lag0007256.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane