Lag0007039 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007039
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr6: 48274682 .. 48275182 (-)
RNA-Seq Expression	Lag0007039
Synteny	Lag0007039

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAACTCGGAAGCGGCACGACTTTCTTCCGGCGGAGGACTCGACGCAGAAGCGGCCGCGAGCGGCGGAGGAGGATGTCGACGACGACATTCTGGCTTGGATTTCGCTCGAGGAGGAAACAGTCGGAGAACTCATGATGCTTCTCGACGACGCGGAGAAAAGCCGGCCGATGGCCGAGAAAGTGAAGTTCATCGACGATCCGTACTCCTCCGCGATGATTTTCCAATCGTCGTCGTCGTACGTCACGATCAACGGAAACGAAGAGAGTTGCGGTTCGTCTTTCTCCGAATCGGACTCGTCGGTGATGGCGAGCGTCGACATGAACGGAGCGAGGATTAAACTGATGGAACTCGATTCCGAAACTGTGGAGAAATGGAAGACGTGGAGTGAGGATCGGTTGAAGGCGGAGGAGGAGGCCTCGGCCGTATCGGACGGATTCAGTTGGGACGAGGATGATTTGGCAAGGTTCATCGGCGATGATGAACAGATTTTCTGA

mRNA sequence

ATGGAGGAAACTCGGAAGCGGCACGACTTTCTTCCGGCGGAGGACTCGACGCAGAAGCGGCCGCGAGCGGCGGAGGAGGATGTCGACGACGACATTCTGGCTTGGATTTCGCTCGAGGAGGAAACAGTCGGAGAACTCATGATGCTTCTCGACGACGCGGAGAAAAGCCGGCCGATGGCCGAGAAAGTGAAGTTCATCGACGATCCGTACTCCTCCGCGATGATTTTCCAATCGTCGTCGTCGTACGTCACGATCAACGGAAACGAAGAGAGTTGCGGTTCGTCTTTCTCCGAATCGGACTCGTCGGTGATGGCGAGCGTCGACATGAACGGAGCGAGGATTAAACTGATGGAACTCGATTCCGAAACTGTGGAGAAATGGAAGACGTGGAGTGAGGATCGGTTGAAGGCGGAGGAGGAGGCCTCGGCCGTATCGGACGGATTCAGTTGGGACGAGGATGATTTGGCAAGGTTCATCGGCGATGATGAACAGATTTTCTGA

Coding sequence (CDS)

ATGGAGGAAACTCGGAAGCGGCACGACTTTCTTCCGGCGGAGGACTCGACGCAGAAGCGGCCGCGAGCGGCGGAGGAGGATGTCGACGACGACATTCTGGCTTGGATTTCGCTCGAGGAGGAAACAGTCGGAGAACTCATGATGCTTCTCGACGACGCGGAGAAAAGCCGGCCGATGGCCGAGAAAGTGAAGTTCATCGACGATCCGTACTCCTCCGCGATGATTTTCCAATCGTCGTCGTCGTACGTCACGATCAACGGAAACGAAGAGAGTTGCGGTTCGTCTTTCTCCGAATCGGACTCGTCGGTGATGGCGAGCGTCGACATGAACGGAGCGAGGATTAAACTGATGGAACTCGATTCCGAAACTGTGGAGAAATGGAAGACGTGGAGTGAGGATCGGTTGAAGGCGGAGGAGGAGGCCTCGGCCGTATCGGACGGATTCAGTTGGGACGAGGATGATTTGGCAAGGTTCATCGGCGATGATGAACAGATTTTCTGA

Protein sequence

MEETRKRHDFLPAEDSTQKRPRAAEEDVDDDILAWISLEEETVGELMMLLDDAEKSRPMAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLMELDSETVEKWKTWSEDRLKAEEEASAVSDGFSWDEDDLARFIGDDEQIF

Homology

[Close]

BLAST of Lag0007039 vs. NCBI nr
Match: XP_038890889.1 (uncharacterized protein LOC120080324 [Benincasa hispida])

HSP 1 Score: 277.7 bits (709), Expect = 6.5e-71
Identity = 145/169 (85.80%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPRAA---EEDVDDDILAWISLEEETVGELMMLLDDAEKSR 60
           M+E+RKRH+F+P E ST+KRPR A    EDVDDDILAWIS+EEETVGELMMLLDD EKSR
Sbjct: 1   MDESRKRHEFVPPEASTEKRPRVAVKEAEDVDDDILAWISVEEETVGELMMLLDDVEKSR 60

Query: 61  PMAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLM 120
           PM EKVKFIDDPYSSA+IFQSSSSYVTINGNEESCGSSFSESDSS+MASVDMNGARIKLM
Sbjct: 61  PMEEKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKLM 120

Query: 121 ELDSETVEKWKTWSEDRLKAEEEASAVSDGFSWDEDDLARFIGDDEQIF 167
           E+DSETVEKWK WSEDRLK EEE SAV DGF WDEDDLARFIGD+EQIF
Sbjct: 121 EIDSETVEKWKLWSEDRLKEEEETSAVLDGFCWDEDDLARFIGDEEQIF 169

[Close]

BLAST of Lag0007039 vs. NCBI nr
Match: XP_022965986.1 (uncharacterized protein LOC111465706 [Cucurbita maxima])

HSP 1 Score: 269.6 bits (688), Expect = 1.8e-68
Identity = 145/168 (86.31%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPRAAE--EDVDDDILAWISLEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDF+PAE+STQKRPRAA   EDV +DILAWIS+EEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 LDSETVEKWKTWSEDRLKAEEEASAVSDGFSWDEDDLARFIGDDEQIF 167
           +DS TVEKWK W        EEAS+VS+GFSWDEDDLARFIGD+EQIF
Sbjct: 121 IDSATVEKWKLWK------TEEASSVSEGFSWDEDDLARFIGDEEQIF 162

[Close]

BLAST of Lag0007039 vs. NCBI nr
Match: XP_023538157.1 (uncharacterized protein LOC111799012 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 144/168 (85.71%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPRAAE--EDVDDDILAWISLEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDF+PAE+STQKRPRAA   EDV +DILAWIS+EEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 LDSETVEKWKTWSEDRLKAEEEASAVSDGFSWDEDDLARFIGDDEQIF 167
           +DS TVEKWK W        EEAS+VS+G SWDEDDLARFIGD+EQIF
Sbjct: 121 IDSATVEKWKLWK------SEEASSVSEGSSWDEDDLARFIGDEEQIF 162

[Close]

BLAST of Lag0007039 vs. NCBI nr
Match: KAG6586479.1 (hypothetical protein SDJN03_19212, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021338.1 hypothetical protein SDJN02_18027, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.0 bits (676), Expect = 4.3e-67
Identity = 142/168 (84.52%), Postives = 152/168 (90.48%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPRAAE--EDVDDDILAWISLEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDF+PAE+STQKRPRAA   EDV +DILAWIS+EEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 LDSETVEKWKTWSEDRLKAEEEASAVSDGFSWDEDDLARFIGDDEQIF 167
           +DS TVEKWK W        EE S++S+G SWDEDDLARFIGD+EQIF
Sbjct: 121 IDSATVEKWKLWK------SEEVSSISEGSSWDEDDLARFIGDEEQIF 162

[Close]

BLAST of Lag0007039 vs. NCBI nr
Match: XP_022938092.1 (uncharacterized protein LOC111444281 [Cucurbita moschata])

HSP 1 Score: 264.6 bits (675), Expect = 5.7e-67
Identity = 142/168 (84.52%), Postives = 152/168 (90.48%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPRAAE--EDVDDDILAWISLEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDF+PAE+STQKRPRAA   EDV +DILAWIS+EEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 LDSETVEKWKTWSEDRLKAEEEASAVSDGFSWDEDDLARFIGDDEQIF 167
           +DS TVEKWK W        EEAS++S+G SWDEDDLARFIGD+E IF
Sbjct: 121 IDSATVEKWKLWK------SEEASSISEGSSWDEDDLARFIGDEEHIF 162

The following BLAST results are available for this feature:

BLAST of Lag0007039 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890889.1	6.5e-71	85.80	uncharacterized protein LOC120080324 [Benincasa hispida]	[more]
XP_022965986.1	1.8e-68	86.31	uncharacterized protein LOC111465706 [Cucurbita maxima]	[more]
XP_023538157.1	1.1e-67	85.71	uncharacterized protein LOC111799012 [Cucurbita pepo subsp. pepo]	[more]
KAG6586479.1	4.3e-67	84.52	hypothetical protein SDJN03_19212, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938092.1	5.7e-67	84.52	uncharacterized protein LOC111444281 [Cucurbita moschata]	[more]

BLAST of Lag0007039 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR37265	OS01G0195300 PROTEIN	coord: 1..163
None	No IPR available	PANTHER	PTHR37265:SF5	BNACNNG68970D PROTEIN	coord: 1..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007039.1	Lag0007039.1	mRNA