Lag0007012 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007012
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Profilin
Location	chr6: 48024879 .. 48026226 (-)
RNA-Seq Expression	Lag0007012
Synteny	Lag0007012

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTGGCAAGTTTACGTCGATGATCATCTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCGCCGCTTTCCCTCAGGTTTAATCTCTCTCTTACAGGAAATTTGAAATCCGAGTATTGATTTGATTGCTTGCTTGAAATCGATGGCTGGATCTGTATGGATTTTTAACTCAAGATCTCGTGGTTTGACGATGATGTTTGATTTTATCGTGGATGATTTGATCTGATTGTTTTTAGGTCGGTGCATTACTTCGGGAATCTCTAGTTTTAAATCGGTTTTTCGGAGTAATTCTATGCAGTTTCATTGGATGTGATTGCAATTAGAATCTGTTGTTGGTTTGATTCTTTTTTGTTTATGTCGATTTGATGTAGCGACTGACTATGAGGCGGTGAAGATCTGGAGTTTCCGATCACCGTCTTCTAGTCTTCTAGATTTACTTCTAAGTATTTCGATTTTATTATCACATATTTTGAACTTCGATTTGAGAAGAGAAATTGAGTCCTAATTCGTGAGTAAGAACTTTTCAATCGGTTGTTGTGTTGCTGCATCTCTCTATAGTTCGTGTTGGTGATTGATATCACATTATATCTTTAATGGAATTTTTAGAAGTTAAGGATGTTGGTCCGTCTAACTTTTCTGGTTTCTTGTCGACGTCATGAGGTTCTCAATGCATGTTCTTGTTTTTTGTTTTGCAGTTCAAGGGTGAGGAAATTAGTGCCATCATGAATGACTTCAATGAACCTGGGACGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGCAAAATATATGGTTATCCAAGGCGAGCCTGGAGCTGTTATTCGCGGGAAGAAGGTGATAAACTCTTATTGTACAATTATAATTCTCTGCTATGAATTGTGACTCTCAGAGATTTGCATGCAAACAATTTATTTTGAAAATGTTCTAAAATTAATCTATTAGTTGCATCTGAATATGAGAACGTTCATCCTAGATTAGTTTCTAACTGGTCTGTCAAGATTGTTACAATTGTTAAAAGTTTGTAAATTCACTGTGTATTCTGCAGTATAATAATTTTTACTCTTGGGCACTGAGGCACTGTTCTATTGGTGGAGATATTTTGATGTTTGATTAGGCAAATTACAATGCTCCTTTCGATTTTATTTAAACCAATTATCTTCCATTTCAGGGCCCAGGTGGGGTTACTGTGAAGAAAACTGGTCTGGCTCTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGTCAGTGCAATATGATTGTTGAAAGGCTTGGGGACTATCTCATCGACCAGGGTCTCTAA

mRNA sequence

ATGTCGTGGCAAGTTTACGTCGATGATCATCTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCGCCGCTTTCCCTCAGTTCAAGGGTGAGGAAATTAGTGCCATCATGAATGACTTCAATGAACCTGGGACGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGCAAAATATATGGTTATCCAAGGCGAGCCTGGAGCTGTTATTCGCGGGAAGAAGGGCCCAGGTGGGGTTACTGTGAAGAAAACTGGTCTGGCTCTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGTCAGTGCAATATGATTGTTGAAAGGCTTGGGGACTATCTCATCGACCAGGGTCTCTAA

Coding sequence (CDS)

ATGTCGTGGCAAGTTTACGTCGATGATCATCTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCGCCGCTTTCCCTCAGTTCAAGGGTGAGGAAATTAGTGCCATCATGAATGACTTCAATGAACCTGGGACGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGCAAAATATATGGTTATCCAAGGCGAGCCTGGAGCTGTTATTCGCGGGAAGAAGGGCCCAGGTGGGGTTACTGTGAAGAAAACTGGTCTGGCTCTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGTCAGTGCAATATGATTGTTGAAAGGCTTGGGGACTATCTCATCGACCAGGGTCTCTAA

Protein sequence

MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVERLGDYLIDQGL

Homology

[Close]

BLAST of Lag0007012 vs. NCBI nr
Match: XP_022999543.1 (profilin-1 [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 5.8e-67
Identity = 123/131 (93.89%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTL 60
           MSWQVYVDDHLMC+IEGNHLTSAAIIGHDGSVWAQS  FP+FK EEI+AIMNDFNEPGTL
Sbjct: 1   MSWQVYVDDHLMCDIEGNHLTSAAIIGHDGSVWAQSETFPKFKPEEIAAIMNDFNEPGTL 60

Query: 61  APTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120
           APTGLYLGG+KYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE
Sbjct: 61  APTGLYLGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120

Query: 121 RLGDYLIDQGL 132
           RLGDYL+DQGL
Sbjct: 121 RLGDYLVDQGL 131

[Close]

BLAST of Lag0007012 vs. NCBI nr
Match: XP_022154695.1 (profilin-1 [Momordica charantia])

HSP 1 Score: 264.2 bits (674), Expect = 5.8e-67
Identity = 124/131 (94.66%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTL 60
           MSWQVYVDDHLMCEIEGNHLTS+AIIGHDGSVWAQSAAFP FK EEISAIMNDF+EPGTL
Sbjct: 1   MSWQVYVDDHLMCEIEGNHLTSSAIIGHDGSVWAQSAAFPPFKPEEISAIMNDFSEPGTL 60

Query: 61  APTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120
           APTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKT +AL+IGIYDEPMTPGQCNMIVE
Sbjct: 61  APTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTSMALIIGIYDEPMTPGQCNMIVE 120

Query: 121 RLGDYLIDQGL 132
           RLGDYLIDQGL
Sbjct: 121 RLGDYLIDQGL 131

[Close]

BLAST of Lag0007012 vs. NCBI nr
Match: XP_023546560.1 (profilin-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66
Identity = 122/131 (93.13%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTL 60
           MSWQVYVDDHLMC+IEGNHL+SAAIIGHDGSVWAQS  FP+FK EEI+AIMNDFNEPGTL
Sbjct: 1   MSWQVYVDDHLMCDIEGNHLSSAAIIGHDGSVWAQSETFPKFKPEEIAAIMNDFNEPGTL 60

Query: 61  APTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120
           APTGLYLGG+KYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE
Sbjct: 61  APTGLYLGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120

Query: 121 RLGDYLIDQGL 132
           RLGDYL+DQGL
Sbjct: 121 RLGDYLVDQGL 131

[Close]

BLAST of Lag0007012 vs. NCBI nr
Match: XP_022946037.1 (profilin-1 [Cucurbita moschata] >XP_022946038.1 profilin-1 [Cucurbita moschata])

HSP 1 Score: 260.8 bits (665), Expect = 6.5e-66
Identity = 121/131 (92.37%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTL 60
           MSWQVYVDDHLMC+IEGNHL+SAAIIGHDGSVWAQS  FP+FK EEI+AIMNDF+EPGTL
Sbjct: 1   MSWQVYVDDHLMCDIEGNHLSSAAIIGHDGSVWAQSETFPKFKPEEIAAIMNDFSEPGTL 60

Query: 61  APTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120
           APTGLYLGG+KYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE
Sbjct: 61  APTGLYLGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120

Query: 121 RLGDYLIDQGL 132
           RLGDYL+DQGL
Sbjct: 121 RLGDYLVDQGL 131

[Close]

BLAST of Lag0007012 vs. NCBI nr
Match: XP_027920460.1 (profilin-1 [Vigna unguiculata] >QCD85225.1 profilin [Vigna unguiculata])

HSP 1 Score: 260.4 bits (664), Expect = 8.4e-66
Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTL 60
           MSWQVYVDDHL+CEIEGNHLT AAIIGHDGSVWAQS++FPQFK EEI+ IMNDFNEPGTL
Sbjct: 1   MSWQVYVDDHLLCEIEGNHLTHAAIIGHDGSVWAQSSSFPQFKPEEITGIMNDFNEPGTL 60

Query: 61  APTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120
           APTGLY+GG KYMVIQGEPGAVIRGKKGPGGVTVKKT LALVIGIYDEPMTPGQCNMIVE
Sbjct: 61  APTGLYIGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNLALVIGIYDEPMTPGQCNMIVE 120

Query: 121 RLGDYLIDQGL 132
           RLGDYLIDQGL
Sbjct: 121 RLGDYLIDQGL 131

[Close]

BLAST of Lag0007012 vs. ExPASy Swiss-Prot
Match: O82572 (Profilin-1 OS=Ricinus communis OX=3988 GN=PRO1 PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 7.9e-67
Identity = 119/131 (90.84%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 1   MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTL 60
           MSWQ YVDDHLMCEIEGNHLTSAAIIG DGSVWAQS+ FPQFK EEI+AIMNDFNEPG+L
Sbjct: 1   MSWQTYVDDHLMCEIEGNHLTSAAIIGQDGSVWAQSSTFPQFKPEEITAIMNDFNEPGSL 60

Query: 61  APTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120
           APTGLYL G KYMVIQGEPGAVIRGKKGPGGVTVKKT  AL+IGIYDEPMTPGQCNMIVE
Sbjct: 61  APTGLYLSGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVE 120

Query: 121 RLGDYLIDQGL 132
           RLGDYLIDQGL
Sbjct: 121 RLGDYLIDQGL 131

[Close]

BLAST of Lag0007012 vs. ExPASy Swiss-Prot
Match: P49231 (Profilin-1 OS=Phaseolus vulgaris OX=3885 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 3.9e-66
Identity = 116/131 (88.55%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTL 60
           MSWQ YVDDHL+CEIEGNHLT AAI+G DGSVWA+SA+FPQFK EEI+ IMNDFNEPGTL
Sbjct: 1   MSWQTYVDDHLLCEIEGNHLTHAAILGQDGSVWAKSASFPQFKPEEITGIMNDFNEPGTL 60

Query: 61  APTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120
           APTGLY+GG KYMVIQGEPG+VIRGKKGPGGVTVKKT LALVIGIYDEPMTPGQCNMIVE
Sbjct: 61  APTGLYIGGTKYMVIQGEPGSVIRGKKGPGGVTVKKTNLALVIGIYDEPMTPGQCNMIVE 120

Query: 121 RLGDYLIDQGL 132
           RLGDYLI+QGL
Sbjct: 121 RLGDYLIEQGL 131

[Close]

BLAST of Lag0007012 vs. ExPASy Swiss-Prot
Match: Q5XWE1 (Profilin OS=Citrullus lanatus OX=3654 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 8.8e-66
Identity = 117/131 (89.31%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 1   MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTL 60
           MSWQ YVDDHLMCEIEGNHLTSAAIIG DGSVWA+S  FPQ K EEI+ I+NDFNEPGTL
Sbjct: 1   MSWQAYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQLKPEEITGILNDFNEPGTL 60

Query: 61  APTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120
           APTGLY+GG+KYMVIQGEPGAVIRGKKGPGGVTVKKT LALVIGIYDEPMTPGQCNMIVE
Sbjct: 61  APTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPGQCNMIVE 120

Query: 121 RLGDYLIDQGL 132
           RLGDYLI+QGL
Sbjct: 121 RLGDYLIEQGL 131

[Close]

BLAST of Lag0007012 vs. ExPASy Swiss-Prot
Match: Q8GT39 (Profilin OS=Prunus persica OX=3760 PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-65
Identity = 114/131 (87.02%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTL 60
           MSWQ YVDDHLMCEIEGNHL++AAIIGHDGSVWAQSA FPQ K EE++ I+NDFNEPG+L
Sbjct: 1   MSWQAYVDDHLMCEIEGNHLSAAAIIGHDGSVWAQSATFPQLKPEEVTGILNDFNEPGSL 60

Query: 61  APTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120
           APTGLYLGG KYMVIQGEPGAVIRGKKGPGGVTVKK+ LAL+IGIYDEPMTPGQCNMIVE
Sbjct: 61  APTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKSTLALLIGIYDEPMTPGQCNMIVE 120

Query: 121 RLGDYLIDQGL 132
           RLGDYL++QGL
Sbjct: 121 RLGDYLVEQGL 131

[Close]

BLAST of Lag0007012 vs. ExPASy Swiss-Prot
Match: O65809 (Profilin-1 OS=Glycine max OX=3847 GN=PRO1 PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 2.6e-65
Identity = 115/130 (88.46%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTL 60
           MSWQ YVDDHL+C+IEGNHLT AAIIG DGSVWAQS  FPQFK EEI+AIMNDFNEPG+L
Sbjct: 1   MSWQAYVDDHLLCDIEGNHLTHAAIIGQDGSVWAQSTDFPQFKPEEITAIMNDFNEPGSL 60

Query: 61  APTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVE 120
           APTGLYLGG KYMVIQGEPGAVIRGKKGPGGVTVKKTG AL+IGIYDEPMTPGQCNM+VE
Sbjct: 61  APTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGAALIIGIYDEPMTPGQCNMVVE 120

Query: 121 RLGDYLIDQG 131
           R GDYLIDQG
Sbjct: 121 RPGDYLIDQG 130

The following BLAST results are available for this feature:

BLAST of Lag0007012 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022999543.1	5.8e-67	93.89	profilin-1 [Cucurbita maxima]	[more]
XP_022154695.1	5.8e-67	94.66	profilin-1 [Momordica charantia]	[more]
XP_023546560.1	1.7e-66	93.13	profilin-1 [Cucurbita pepo subsp. pepo]	[more]
XP_022946037.1	6.5e-66	92.37	profilin-1 [Cucurbita moschata] >XP_022946038.1 profilin-1 [Cucurbita moschata]	[more]
XP_027920460.1	8.4e-66	92.37	profilin-1 [Vigna unguiculata] >QCD85225.1 profilin [Vigna unguiculata]	[more]

BLAST of Lag0007012 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82572	7.9e-67	90.84	Profilin-1 OS=Ricinus communis OX=3988 GN=PRO1 PE=2 SV=1	[more]
P49231	3.9e-66	88.55	Profilin-1 OS=Phaseolus vulgaris OX=3885 PE=1 SV=1	[more]
Q5XWE1	8.8e-66	89.31	Profilin OS=Citrullus lanatus OX=3654 PE=1 SV=1	[more]
Q8GT39	1.5e-65	87.02	Profilin OS=Prunus persica OX=3760 PE=1 SV=1	[more]
O65809	2.6e-65	88.46	Profilin-1 OS=Glycine max OX=3847 GN=PRO1 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005455	Profilin	PRINTS	PR00392	PROFILIN	coord: 3..12 score: 72.0 coord: 40..60 score: 52.62 coord: 21..30 score: 71.5 coord: 113..130 score: 70.56 coord: 100..113 score: 69.46 coord: 64..78 score: 70.0
IPR005455	Profilin	PRINTS	PR01640	PROFILINPLNT	coord: 52..66 score: 76.97 coord: 84..99 score: 78.07 coord: 104..117 score: 92.08 coord: 1..14 score: 83.9 coord: 117..130 score: 82.47 coord: 27..40 score: 83.64 coord: 71..80 score: 96.73
IPR005455	Profilin	SMART	SM00392	prof_2	coord: 1..131 e-value: 1.8E-57 score: 206.9
IPR005455	Profilin	PFAM	PF00235	Profilin	coord: 1..130 e-value: 3.4E-41 score: 140.4
IPR005455	Profilin	PANTHER	PTHR11604	PROFILIN	coord: 1..130
IPR005455	Profilin	CDD	cd00148	PROF	coord: 2..130 e-value: 7.79588E-57 score: 170.969
None	No IPR available	GENE3D	3.30.450.30	Dynein light chain 2a, cytoplasmic	coord: 1..131 e-value: 8.6E-56 score: 189.6
None	No IPR available	PANTHER	PTHR11604:SF47	PROFILIN	coord: 1..130
IPR027310	Profilin conserved site	PROSITE	PS00414	PROFILIN	coord: 1..8
IPR036140	Profilin superfamily	SUPERFAMILY	55770	Profilin (actin-binding protein)	coord: 2..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007012.1	Lag0007012.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010229	inflorescence development
biological_process	GO:0048366	leaf development
biological_process	GO:0090379	secondary cell wall biogenesis involved in seed trichome differentiation
biological_process	GO:0090378	seed trichome elongation
biological_process	GO:0042989	sequestering of actin monomers
biological_process	GO:0048527	lateral root development
cellular_component	GO:0009524	phragmoplast
cellular_component	GO:0005819	spindle
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005938	cell cortex
cellular_component	GO:0048046	apoplast
molecular_function	GO:0003785	actin monomer binding
molecular_function	GO:0003779	actin binding