Lag0006948 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006948
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr6: 47379797 .. 47380288 (+)
RNA-Seq ExpressionLag0006948
SyntenyLag0006948
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTCGTCAACGGTTCAAGATCACAGTAAAATTAGAAGAAAAAACAAATCAAAGTCGTCGAAGAGAAAACTCGATTTTGCTTGCCTTCAATTTGTCTCTTCCCTGCCGATTCAGGAGAAATCTGCTGCAAGCGGACGAACCACAGCGCTGCGTTCTAACAGCCGGTGAGAAATTAAACCGTACGTACCTCCGATCCATCCTCAAACCTAAACATTCCTCCACTCCAATCCGTCCAGAATCGGAGATCAATTCCGATTGGATGCTCTCGCGGATTAAACAGGACGTTGATCGTCGCGTTCGGAGGGAAAAAACAACAATCGACGGTGGAATCAGGTGCTTTAATCAGGAATATCGTGATCGTGCCAACACAGAAGCATGGAGATGCAACGGCCGAGGATATAGAATCTGGTTTTCTGTTGCTTGATCATCCTAAAGCACCGCTTTCGGAAACTGGTTTTCCGGCGGTTTCTGAGGCGGAGTTGCGTTGA

mRNA sequence

ATGAAATTCGTCAACGGTTCAAGATCACAGACGTTGATCGTCGCGTTCGGAGGGAAAAAACAACAATCGACGGTGGAATCAGGTGCTTTAATCAGGAATATCGTGATCGTGCCAACACAGAAGCATGGAGATGCAACGGCCGAGGATATAGAATCTGGTTTTCTGTTGCTTGATCATCCTAAAGCACCGCTTTCGGAAACTGGTTTTCCGGCGGTTTCTGAGGCGGAGTTGCGTTGA

Coding sequence (CDS)

ATGAAATTCGTCAACGGTTCAAGATCACAGACGTTGATCGTCGCGTTCGGAGGGAAAAAACAACAATCGACGGTGGAATCAGGTGCTTTAATCAGGAATATCGTGATCGTGCCAACACAGAAGCATGGAGATGCAACGGCCGAGGATATAGAATCTGGTTTTCTGTTGCTTGATCATCCTAAAGCACCGCTTTCGGAAACTGGTTTTCCGGCGGTTTCTGAGGCGGAGTTGCGTTGA

Protein sequence

MKFVNGSRSQTLIVAFGGKKQQSTVESGALIRNIVIVPTQKHGDATAEDIESGFLLLDHPKAPLSETGFPAVSEAELR
Homology
[Close]
BLAST of Lag0006948 vs. NCBI nr
Match: KAA0061572.1 (hypothetical protein E6C27_scaffold41G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 25 VESGALIRNIVIVPTQKHGDATAEDIESGFLLLDHPKAPLSETGFPAVSEAELR 79
          V+ G LIRNI+IVPT+KHGDATAEDIESGFLLLDHP+A LS+TGFPAVSEAELR
Sbjct: 2  VDLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAELR 55

[Close]
BLAST of Lag0006948 vs. NCBI nr
Match: TYK10702.1 (hypothetical protein E5676_scaffold332G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 25 VESGALIRNIVIVPTQKHGDATAEDIESGFLLLDHPKAPLSETGFPAVSEAELR 79
          V+ G LIRNI+IVPT+KHGDATAEDIESGFLLLDHP+A LS+TGFPAVSEAELR
Sbjct: 2  VDLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAELR 55

[Close]
BLAST of Lag0006948 vs. NCBI nr
Match: KAE8651522.1 (hypothetical protein Csa_023920, partial [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 9.9e-14
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 26 ESGALIRNIVIVPTQKHGDATAEDIESGFLLLDHPKAPLSETGFPAVSEAE 77
          E G LI NI+IVPT+KHGDATAEDI+SGFLLLDHP+A LS+TGFPAVS+AE
Sbjct: 1  ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAE 51

[Close]
BLAST of Lag0006948 vs. NCBI nr
Match: RAL37228.1 (hypothetical protein DM860_004150 [Cuscuta australis])

HSP 1 Score: 53.5 bits (127), Expect = 9.3e-04
Identity = 26/41 (63.41%), Postives = 28/41 (68.29%), Query Frame = 0 

Query: 35  VIVPTQKHGDATAEDIESGFLLLDHPKAPLSETGFPAVSEA 76
           VI+P QKH DA  EDIE   LLL H +APL E GFPA S A
Sbjct: 64  VILPAQKHHDAAPEDIEPSLLLLGHGQAPLPEAGFPAGSPA 104

The following BLAST results are available for this feature:
BLAST of Lag0006948 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061572.12.1e-1685.19hypothetical protein E6C27_scaffold41G001340 [Cucumis melo var. makuwa][more]
TYK10702.12.1e-1685.19hypothetical protein E5676_scaffold332G00110 [Cucumis melo var. makuwa][more]
KAE8651522.19.9e-1480.39hypothetical protein Csa_023920, partial [Cucumis sativus][more]
RAL37228.19.3e-0463.41hypothetical protein DM860_004150 [Cuscuta australis][more]
BLAST of Lag0006948 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006948.1Lag0006948.1mRNA