Lag0006930 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006930
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPlant/protein
Locationchr6: 47208347 .. 47208682 (-)
RNA-Seq ExpressionLag0006930
SyntenyLag0006930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCAATCTTCTCACCTTCCGCCCCGTCGGAATCCGACCATCCGCCGCCGCGGATCCCCGAAAACCCGATCCCGACCTCCATTTCAGGCTCTGGTGGAGGCCTGGCCAGTCGGAGCGGCAGAGATCGGAGTCGGATTCGGAATCGGGAGAGAAGGCGGCGGGATCTCGATTCTCTCCCGGTTGCTTCACGGCGGAGAAGGCGAGGAAGCTTCGAATAGTGACGACGAAGGGCAATTCGTTTCACGACGCCATGTATCATTCGGCGATCGCATCTCGTTTGGCTTCCGATTTCTCGAACACGAACAATAATCAGGCTCGGATTCTCAAGTGA

mRNA sequence

ATGGCCACCAATCTTCTCACCTTCCGCCCCGTCGGAATCCGACCATCCGCCGCCGCGGATCCCCGAAAACCCGATCCCGACCTCCATTTCAGGCTCTGGTGGAGGCCTGGCCAGTCGGAGCGGCAGAGATCGGAGTCGGATTCGGAATCGGGAGAGAAGGCGGCGGGATCTCGATTCTCTCCCGGTTGCTTCACGGCGGAGAAGGCGAGGAAGCTTCGAATAGTGACGACGAAGGGCAATTCGTTTCACGACGCCATGTATCATTCGGCGATCGCATCTCGTTTGGCTTCCGATTTCTCGAACACGAACAATAATCAGGCTCGGATTCTCAAGTGA

Coding sequence (CDS)

ATGGCCACCAATCTTCTCACCTTCCGCCCCGTCGGAATCCGACCATCCGCCGCCGCGGATCCCCGAAAACCCGATCCCGACCTCCATTTCAGGCTCTGGTGGAGGCCTGGCCAGTCGGAGCGGCAGAGATCGGAGTCGGATTCGGAATCGGGAGAGAAGGCGGCGGGATCTCGATTCTCTCCCGGTTGCTTCACGGCGGAGAAGGCGAGGAAGCTTCGAATAGTGACGACGAAGGGCAATTCGTTTCACGACGCCATGTATCATTCGGCGATCGCATCTCGTTTGGCTTCCGATTTCTCGAACACGAACAATAATCAGGCTCGGATTCTCAAGTGA

Protein sequence

MATNLLTFRPVGIRPSAAADPRKPDPDLHFRLWWRPGQSERQRSESDSESGEKAAGSRFSPGCFTAEKARKLRIVTTKGNSFHDAMYHSAIASRLASDFSNTNNNQARILK
Homology
BLAST of Lag0006930 vs. NCBI nr
Match: XP_022998955.1 (uncharacterized protein LOC111493481 [Cucurbita maxima])

HSP 1 Score: 134.8 bits (338), Expect = 4.5e-28
Identity = 70/118 (59.32%), Postives = 83/118 (70.34%), Query Frame = 0

Query: 1   MATNLLTFRPVGIRPSAAADP--RKPDPDLHFRLWWRP--------GQSERQRSESDSES 60
           M TNLL FRP+GIRPSA+A    RKPDP  H+R WW+P        G      S+S+S  
Sbjct: 1   MTTNLLVFRPIGIRPSASAGTGHRKPDPQRHYRPWWKPCPPNKITEGAQPDPNSDSNSNL 60

Query: 61  GEKAAGSRFSPGCFTAEKARKLRIVTTKGNSFHDAMYHSAIASRLASDFSNTNNNQAR 109
            EKAAGSRFSPGC TAEKAR+LRI+T+K + F D MYHS +ASRLASDFSNT N+  +
Sbjct: 61  AEKAAGSRFSPGCLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK 118

BLAST of Lag0006930 vs. NCBI nr
Match: KAG7030406.1 (hypothetical protein SDJN02_08753, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 68/116 (58.62%), Postives = 81/116 (69.83%), Query Frame = 0

Query: 1   MATNLLTFRPVGIRPSAAADP--RKPDPDLHFRLWWRP------GQSERQRSESDSESGE 60
           M TNLL FRP+GIRPSA+A    RK DP  H+R WW+P       +  +    SDS S E
Sbjct: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDSNSAE 60

Query: 61  KAAGSRFSPGCFTAEKARKLRIVTTKGNSFHDAMYHSAIASRLASDFSNTNNNQAR 109
           KAAGSRFSPG  TAEKAR+LRI+T+K + F D MYHS +ASRLASDFSNT N+  +
Sbjct: 61  KAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK 116

BLAST of Lag0006930 vs. NCBI nr
Match: KAG6599416.1 (hypothetical protein SDJN03_09194, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-25
Identity = 67/116 (57.76%), Postives = 80/116 (68.97%), Query Frame = 0

Query: 1   MATNLLTFRPVGIRPSAAADP--RKPDPDLHFRLWWRP------GQSERQRSESDSESGE 60
           M TNLL FRP+GIRPSA+A    RK DP  H+R WW+P       +  +    SD  S E
Sbjct: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDWNSAE 60

Query: 61  KAAGSRFSPGCFTAEKARKLRIVTTKGNSFHDAMYHSAIASRLASDFSNTNNNQAR 109
           KAAGSRFSPG  TAEKAR+LRI+T+K + F D MYHS +ASRLASDFSNT N+  +
Sbjct: 61  KAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK 116

BLAST of Lag0006930 vs. NCBI nr
Match: EOY30955.1 (Uncharacterized protein TCM_037996 [Theobroma cacao])

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 0

Query: 1   MATNLLTFRPVGIRPSAAADPRKPDPDLHFRL-------WWRP----------------- 60
           MAT+LLTFRP GI+  A    RKPDP+            WW P                 
Sbjct: 1   MATHLLTFRPTGIQACAIPGYRKPDPNRRKSTSSSSSANWWAPMFGWSSEPDYIDSDQKT 60

Query: 61  GQSERQRSESDSESGEKAAGSRFSPGCFTAEKARKLRIVTTKGNSFHDAMYHSAIASRLA 105
              E++  ES+ + G+++A ++FSPGCFT EKAR+LR++TTK +SFHD MYHSAIASRLA
Sbjct: 61  EAKEKRDGESERDLGQQSARTKFSPGCFTEEKARQLRMMTTKTSSFHDVMYHSAIASRLA 120

BLAST of Lag0006930 vs. NCBI nr
Match: XP_007013336.2 (PREDICTED: uncharacterized protein LOC18588698 [Theobroma cacao])

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-18
Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 0

Query: 1   MATNLLTFRPVGIRPSAAADPRKPDPDLHFRL-------WWRP----------------- 60
           MAT+LLTFRP GI+  A    RKPDP+            WW P                 
Sbjct: 1   MATHLLTFRPTGIQACAIPGYRKPDPNRRKSTSSSSSANWWAPMFGWSSEPDYIDSDQKT 60

Query: 61  GQSERQRSESDSESGEKAAGSRFSPGCFTAEKARKLRIVTTKGNSFHDAMYHSAIASRLA 105
              E++  ES+ + G+++A ++FSPGCFT EKAR+LR++TTK +SFHD MYHSAIASRLA
Sbjct: 61  EAKEKRDCESERDLGQQSARTKFSPGCFTEEKARQLRMMTTKTSSFHDVMYHSAIASRLA 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022998955.14.5e-2859.32uncharacterized protein LOC111493481 [Cucurbita maxima][more]
KAG7030406.13.2e-2658.62hypothetical protein SDJN02_08753, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6599416.12.1e-2557.76hypothetical protein SDJN03_09194, partial [Cucurbita argyrosperma subsp. sorori... [more]
EOY30955.11.9e-1845.31Uncharacterized protein TCM_037996 [Theobroma cacao][more]
XP_007013336.22.5e-1845.31PREDICTED: uncharacterized protein LOC18588698 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availablePANTHERPTHR34198:SF18PROTEIN, PUTATIVE-RELATEDcoord: 40..103
NoneNo IPR availablePANTHERPTHR34198OS01G0175100 PROTEINcoord: 40..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006930.1Lag0006930.1mRNA