Lag0006860 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006860
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	phosphopantothenoylcysteine decarboxylase subunit VHS3-like
Location	chr6: 46544533 .. 46546453 (+)
RNA-Seq Expression	Lag0006860
Synteny	Lag0006860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGGAGGGTGCGGGCTTCGTCGAGAGAACCTTGTGGGTGCGCTCTGTTTTGGAAGCTATGGCGGTGGAGACTGTTCTCACCACTGCAAACTCCCTTGCTTGCCTTCTGGCGGCGGTAAACCCTCATTTTCACCTTACTCTTTGATGGGGTTTCGGTTTTTTCCGGATTCAACTGATTTTAGTCTTCCTTCTTACTTGTTGAAGCTTAAATTTCGTTGCTCGTTGCGTTTTCTTTGACTTTTTTCGCTTCTTGTGTTGTTCCTTACTCTTTTAGTGTTCGTAGTTCACGGACTTTTGCTTTTGTTAGTTGTAGTTTTACCCTCACTCGTTCATTTTCTTTTCTGGTTACGGTATTTACTTGACTAACAACCCGGTTTCTCTGTCATTGTTCTTTATTGGGTGGTACAGACGTGAAATTTTAGCTGAAAATGTTGAACATTGGCCTGTCTTTGAAGTGAAGTGTTTGTTGTAGTGATAAATGTGGATGGAGGGCAAGTTTTTTCTCACGTTTTGTTGACTTATTTCTCTCATTGTGACCATGAACAAGCTGTCTTTGTCAGGATTTGGTCATTCTGTAGTTAGATTATGCTGGATATTTGGGGTGGAAATCCTTTTGCTTTTCTGCCCCACCTTTGTTGAATTGTGTAAATCCTGCTTCTTTGGGGACAGGGTGTTAGAAATGAGCACTTGTAGTTTTGGAAGTTATATATATTTGCTCCATGTTGGTAAGGTGGATACAGAATGCCTTTGCTGCTGTGTAGATCGGTCAATTTTGCCTCTGAGCTTGCTTGATTGACATTTAATCTAATTCATTTCATGTGGATTTTGTTTATCAAGTTTAAGCTATCCTTTGCACTTTGGTGGTTCTTGCTGTAAGTTCATTTTCACATCGTTAGAATGTCTAATCAACTCATGCTCTGTAATTTCTTGTGGGTATTTTCCTTTTTGGCAACTGGAATCAAGGATGGTTAAAATGCAGCTATTTTGCTACCTTAAGTTCTCCCTGTCCTAACATCTCGCTAAATTGATTGATTTGTTACAGGACGGGACCACGAATTTCACACAATTTCCCCAAATGTTTCCTTTCTTAAATATCAAGTTATATACATTCTCGTTTTGTCCTATAGTTTTTGAAAACTTTATTGCTAAAGTGTATACTGATTGGACGGCTTGACGAACCATATCTGGAGTTTTCTTCTTTTTTCTGATTAGACATTTCAGATAAGCCATAGCTGGAAGTCTTGTTTTTCTATCTGATGCCTGCAGTTACCTCGAATTGTTTTGAAATTTATCATTTTGTATGCAATTTCATAATCTTGTTTGGGACAATTCCGACAATAAGTATCAATTCTAGATTAATTGAATGCACTGAACTCTGATCTTGAGACTTCAATTCACCTTCCAACATAATTAAGTTTTCTCTCCAGGCAGGAGCTCTGTTAAATGATGCCAGTGCTCTACCAGGATTGGCTGCAATTGAGGAAAGGTAATAAAATTTCATGACATTTATTTATTTGTTTTCACTTAATATCTTGGTTGGTTCTGAGATTACTGGCCTTTTCTCCTCTCATAGGTTCCCTTTCGCCGAACTTCACCAGAAGAAAAGTCCTGATCAGGAAAACAAAGATGGCAGTGAAACAGAGGATGATGACGACGACGACGACGATGATGCAAATGATCAGGATGACGACGATGATGATGAAGATTTCTCCGGAGGTGAAGAAGGGGATGACGGTGATCCCGAGGATGACCCTGAAGCTAATGGTGATGGAGGAGCTGGAGGTGATGAGGAAGACGAAGACGATGACGATGACAATGGAGATGAAGACGACGACGATGAGGAAGAGGATGATGACGATGACGATGAAGATGACGAGGAGGAAACACCTCAGCCACCAGCCAAGAAGAGGAAGTGA

mRNA sequence

ATGGAGTTGGAGGGTGCGGGCTTCGTCGAGAGAACCTTGTGGGTGCGCTCTGTTTTGGAAGCTATGGCGGTGGAGACTGTTCTCACCACTGCAAACTCCCTTGCTTGCCTTCTGGCGGCGGCAGGAGCTCTGTTAAATGATGCCAGTGCTCTACCAGGATTGGCTGCAATTGAGGAAAGGTTCCCTTTCGCCGAACTTCACCAGAAGAAAAGTCCTGATCAGGAAAACAAAGATGGCAGTGAAACAGAGGATGATGACGACGACGACGACGATGATGCAAATGATCAGGATGACGACGATGATGATGAAGATTTCTCCGGAGGTGAAGAAGGGGATGACGGTGATCCCGAGGATGACCCTGAAGCTAATGGTGATGGAGGAGCTGGAGGTGATGAGGAAGACGAAGACGATGACGATGACAATGGAGATGAAGACGACGACGATGAGGAAGAGGATGATGACGATGACGATGAAGATGACGAGGAGGAAACACCTCAGCCACCAGCCAAGAAGAGGAAGTGA

Coding sequence (CDS)

ATGGAGTTGGAGGGTGCGGGCTTCGTCGAGAGAACCTTGTGGGTGCGCTCTGTTTTGGAAGCTATGGCGGTGGAGACTGTTCTCACCACTGCAAACTCCCTTGCTTGCCTTCTGGCGGCGGCAGGAGCTCTGTTAAATGATGCCAGTGCTCTACCAGGATTGGCTGCAATTGAGGAAAGGTTCCCTTTCGCCGAACTTCACCAGAAGAAAAGTCCTGATCAGGAAAACAAAGATGGCAGTGAAACAGAGGATGATGACGACGACGACGACGATGATGCAAATGATCAGGATGACGACGATGATGATGAAGATTTCTCCGGAGGTGAAGAAGGGGATGACGGTGATCCCGAGGATGACCCTGAAGCTAATGGTGATGGAGGAGCTGGAGGTGATGAGGAAGACGAAGACGATGACGATGACAATGGAGATGAAGACGACGACGATGAGGAAGAGGATGATGACGATGACGATGAAGATGACGAGGAGGAAACACCTCAGCCACCAGCCAAGAAGAGGAAGTGA

Protein sequence

MELEGAGFVERTLWVRSVLEAMAVETVLTTANSLACLLAAAGALLNDASALPGLAAIEERFPFAELHQKKSPDQENKDGSETEDDDDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDDPEANGDGGAGGDEEDEDDDDDNGDEDDDDEEEDDDDDDEDDEEETPQPPAKKRK

Homology

[Close]

BLAST of Lag0006860 vs. NCBI nr
Match: XP_022938180.1 (prostatic spermine-binding protein-like [Cucurbita moschata])

HSP 1 Score: 223.0 bits (567), Expect = 2.0e-54
Identity = 155/176 (88.07%), Postives = 166/176 (94.32%), Query Frame = 0


Query: 1   MELEGAGFVERTLWVRSVLEAMAVETVLTTANSLACLLAAAGALLNDASALPGLAAIEER 60
           MEL G GFV+RT+WVRSVLEA+AVETV TTANSLACLLAAAGALLNDA+ALPG AAIEE 
Sbjct: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGFAAIEEM 60

Query: 61  FPFAELHQKKSPDQENKDGSETEDDD-DDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPFAELH+KK PDQENKDGSETEDDD DDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDEE--DEDDDDDNGDEDDDDEEEDDDDDDEDDEEETPQPPAKKRK 174
           PEANGDGGAGGD++  DEDDDDDNGD+DDDDEEE++D+DDEDDEEETPQPP KKRK
Sbjct: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDDDEEEEEDEDDEDDEEETPQPPTKKRK 176

[Close]

BLAST of Lag0006860 vs. NCBI nr
Match: XP_023522765.1 (prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.6 bits (566), Expect = 2.6e-54
Identity = 155/176 (88.07%), Postives = 166/176 (94.32%), Query Frame = 0


Query: 1   MELEGAGFVERTLWVRSVLEAMAVETVLTTANSLACLLAAAGALLNDASALPGLAAIEER 60
           MEL G GFV+RT+WVRSVLEA+AVETV TTANSLACLLAAAGALLNDA+ALPG AAIEE 
Sbjct: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGCAAIEEM 60

Query: 61  FPFAELHQKKSPDQENKDGSETEDDD-DDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPFAELH+KK PDQENKDGSETEDDD DDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDEE--DEDDDDDNGDEDDDDEEEDDDDDDEDDEEETPQPPAKKRK 174
           PEANGDGGAGGD++  DEDDDDDNGD+DDDDEEE++D+DDEDDEEETPQPP KKRK
Sbjct: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDDDEEEEEDEDDEDDEEETPQPPTKKRK 176

[Close]

BLAST of Lag0006860 vs. NCBI nr
Match: XP_038891026.1 (prostatic spermine-binding protein-like [Benincasa hispida])

HSP 1 Score: 221.1 bits (562), Expect = 7.5e-54
Identity = 152/174 (87.36%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MELEGAGFVERTLWVRSVLEAMAVETVLTTANSLACLLAAAGALLNDASALPGLAAIEER 60
           MEL+G G VERT+WVRSVLEAMAVET L TANS ACLLAAAGA+LN A+A PGLAAIEER
Sbjct: 1   MELDGVGLVERTMWVRSVLEAMAVETALATANSFACLLAAAGAMLNVANATPGLAAIEER 60

Query: 61  FPFAELHQKKSPDQENKDGSETEDD-DDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPF+ELH+KKSPDQENKDGSETEDD DDDD+DDANDQDDDDDDEDFSGGEE DDGDPEDD
Sbjct: 61  FPFSELHKKKSPDQENKDGSETEDDEDDDDEDDANDQDDDDDDEDFSGGEEADDGDPEDD 120

Query: 121 PEANGDGGAGGDEEDEDDDDDNGDEDDDDEEEDDDDDDEDDEEETPQPPAKKRK 174
           PEANGDG AGGDEED+DDDDDNGD+DD+DE+EDDD+DDEDDEEETPQPPAKKRK
Sbjct: 121 PEANGDGRAGGDEEDDDDDDDNGDDDDEDEDEDDDEDDEDDEEETPQPPAKKRK 174

[Close]

BLAST of Lag0006860 vs. NCBI nr
Match: KAG6586370.1 (hypothetical protein SDJN03_19103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.0 bits (554), Expect = 6.3e-53
Identity = 152/176 (86.36%), Postives = 165/176 (93.75%), Query Frame = 0


Query: 1   MELEGAGFVERTLWVRSVLEAMAVETVLTTANSLACLLAAAGALLNDASALPGLAAIEER 60
           MEL G GFV+RT+WVRSVLEA+AVETV TTA+SLACLLAA GALLNDA+ALPG AAIEE 
Sbjct: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60

Query: 61  FPFAELHQKKSPDQENKDGSETEDDD-DDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPFAELH+KK PDQENKDGSETEDDD DDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDEE--DEDDDDDNGDEDDDDEEEDDDDDDEDDEEETPQPPAKKRK 174
           PEANGDGGAGGD++  DEDDDDDNGD+DD+DEEE++D+DDEDDEEETPQPP KKRK
Sbjct: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKRK 176

[Close]

BLAST of Lag0006860 vs. NCBI nr
Match: KAG7021218.1 (hypothetical protein SDJN02_17906, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.5 bits (550), Expect = 1.8e-52
Identity = 151/175 (86.29%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MELEGAGFVERTLWVRSVLEAMAVETVLTTANSLACLLAAAGALLNDASALPGLAAIEER 60
           MEL G GFV+RT+WVRSVLEA+AVETV TTA+SLACLLAA GALLNDA+ALPG AAIEE 
Sbjct: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60

Query: 61  FPFAELHQKKSPDQENKDGSETEDDD-DDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPFAELH+KK PDQENKDGSETEDDD DDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDEE--DEDDDDDNGDEDDDDEEEDDDDDDEDDEEETPQPPAKKR 173
           PEANGDGGAGGD++  DEDDDDDNGD+DD+DEEE++D+DDEDDEEETPQPP KKR
Sbjct: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKR 175

The following BLAST results are available for this feature:

BLAST of Lag0006860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938180.1	2.0e-54	88.07	prostatic spermine-binding protein-like [Cucurbita moschata]	[more]
XP_023522765.1	2.6e-54	88.07	prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_038891026.1	7.5e-54	87.36	prostatic spermine-binding protein-like [Benincasa hispida]	[more]
KAG6586370.1	6.3e-53	86.36	hypothetical protein SDJN03_19103, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7021218.1	1.8e-52	86.29	hypothetical protein SDJN02_17906, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lag0006860 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..163
None	No IPR available	PANTHER	PTHR35711	EXPRESSED PROTEIN	coord: 1..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006860.1	Lag0006860.1	mRNA