Lag0006830 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006830
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr6: 46234494 .. 46234854 (+)
RNA-Seq ExpressionLag0006830
SyntenyLag0006830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCACTCTTCAATGGCGGTTCTTCTTCTCTTCCTCATCATCTCCGAAGCTCAAGGTACCAATCAATTCCTCAACTAATTTTCTAACTTGGGTTTTGTTTGGTTTTTTTTATAAGGCTTTGTTTGGTGAAAAAGATTGAAACTTTTTTTTTTTTTTTTTTGAAGGGATTCGTTTGTTGGAGAAAGGGATCGGCAAGAAAAATGCAGCTGTTTTCGCTAGTAAAAATGGTGGAGATTTGTTGGTGACAATGAAGAGAAAAGCCCCAAACAAAGCCTTGAGAAAACCCTATTCTCATTGGCTACCAGGCATTCAAGAAGATTACCATGGACCAAGAAGCCATAAATCTAGGCACCATTAG

mRNA sequence

ATGAAGCACTCTTCAATGGCGGTTCTTCTTCTCTTCCTCATCATCTCCGAAGCTCAAGGGATTCGTTTGTTGGAGAAAGGGATCGGCAAGAAAAATGCAGCTGTTTTCGCTAGTAAAAATGGTGGAGATTTGTTGGTGACAATGAAGAGAAAAGCCCCAAACAAAGCCTTGAGAAAACCCTATTCTCATTGGCTACCAGGCATTCAAGAAGATTACCATGGACCAAGAAGCCATAAATCTAGGCACCATTAG

Coding sequence (CDS)

ATGAAGCACTCTTCAATGGCGGTTCTTCTTCTCTTCCTCATCATCTCCGAAGCTCAAGGGATTCGTTTGTTGGAGAAAGGGATCGGCAAGAAAAATGCAGCTGTTTTCGCTAGTAAAAATGGTGGAGATTTGTTGGTGACAATGAAGAGAAAAGCCCCAAACAAAGCCTTGAGAAAACCCTATTCTCATTGGCTACCAGGCATTCAAGAAGATTACCATGGACCAAGAAGCCATAAATCTAGGCACCATTAG

Protein sequence

MKHSSMAVLLLFLIISEAQGIRLLEKGIGKKNAAVFASKNGGDLLVTMKRKAPNKALRKPYSHWLPGIQEDYHGPRSHKSRHH
Homology
BLAST of Lag0006830 vs. NCBI nr
Match: KAG6586348.1 (Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 6.4e-19
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 0

Query: 1  MKHSSMAVLLLFLIISEAQGIRLLEKGIGKKNAAVFASKNGGDLLVTMKRKAPNKALRKP 60
          MK SSMAVLLLFLIISEA+GIRLL+K + K++      +NGGDLL TMK +APNKA RKP
Sbjct: 1  MKPSSMAVLLLFLIISEAEGIRLLDKRMSKED-----KRNGGDLLGTMKWRAPNKAWRKP 60

Query: 61 YSHWLPGIQEDYH 74
          YSHWLPGIQEDYH
Sbjct: 61 YSHWLPGIQEDYH 68

BLAST of Lag0006830 vs. NCBI nr
Match: OWM72858.1 (hypothetical protein CDL15_Pgr021164 [Punica granatum] >PKI64712.1 hypothetical protein CRG98_014928 [Punica granatum])

HSP 1 Score: 57.4 bits (137), Expect = 6.9e-05
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 0

Query: 1   MKHSSMA---VLLLFLIISEAQGIR-------LLEKGIGKKNAAVFASKNGGD------- 60
           MKH S++   +LLL L +  AQGIR       LL   I  + A +    NGG+       
Sbjct: 1   MKHLSLSLVGLLLLCLALPCAQGIRLGKGSTLLLHHHIHVEVAPIVKGDNGGEASLCRDK 60

Query: 61  --LLVTMKRKAPNKALRKPYSHWLPGIQEDYHGPRSHKSRHH 84
             L+ TMK+KA   + RK    W+P IQEDY+GPR H+ +HH
Sbjct: 61  ACLVSTMKKKASGPS-RKSSKDWIPSIQEDYYGPRRHRPKHH 101

BLAST of Lag0006830 vs. NCBI nr
Match: RQP03046.1 (hypothetical protein POPTR_018G119850 [Populus trichocarpa])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 36/101 (35.64%), Postives = 52/101 (51.49%), Query Frame = 0

Query: 6   MAVLLLFLIISEAQGIRLLEKGI---------GKKNAAVFASKNGGDL------------ 65
           +++LLL  ++ EAQGIR LEKG          G K++    S NGG L            
Sbjct: 7   VSLLLLSFLLQEAQGIR-LEKGFMQVRAQKVQGDKSSLKERSANGGVLGEAILCKEEHCI 66

Query: 66  --LVTMKRKAPNKALRKPYSHWLPGIQEDYHGPRSHKSRHH 84
             + + +++    A +    HWLP I EDY+GPR+HK +HH
Sbjct: 67  GTITSTEKRVSKSASKNSSHHWLPSIHEDYYGPRNHKPKHH 106

BLAST of Lag0006830 vs. NCBI nr
Match: XP_024445403.1 (uncharacterized protein LOC112324937 [Populus trichocarpa])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 36/101 (35.64%), Postives = 52/101 (51.49%), Query Frame = 0

Query: 6   MAVLLLFLIISEAQGIRLLEKGI---------GKKNAAVFASKNGGDL------------ 65
           +++LLL  ++ EAQGIR LEKG          G K++    S NGG L            
Sbjct: 7   VSLLLLSFLLQEAQGIR-LEKGFMQVRAQKVQGDKSSLKERSANGGVLGEAILCKEEHCT 66

Query: 66  --LVTMKRKAPNKALRKPYSHWLPGIQEDYHGPRSHKSRHH 84
             + + +++    A +    HWLP I EDY+GPR+HK +HH
Sbjct: 67  GTITSTEKRVSKSASKNSSHHWLPSIHEDYYGPRNHKPKHH 106

BLAST of Lag0006830 vs. NCBI nr
Match: KAE8126159.1 (hypothetical protein FH972_020903 [Carpinus fangiana])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 0

Query: 5  SMAVLLLFLIIS-EAQGIRL----LEKGIGKKN--------AAVFASKNGGDLLVTMKRK 64
          ++++LLL L++S EAQGIRL    +  G  K++        A     K+G     TMK++
Sbjct: 6  ALSLLLLCLLLSHEAQGIRLDKMFMSLGQQKQHEADGNALIAGRILCKDGEHCSGTMKKR 65

Query: 65 APNKALRKPYSHWLPGIQEDYHGPRSHKSRHH 84
            ++ L K   HWLP I EDY+GPRSH+ RHH
Sbjct: 66 V-SRVLSKKSHHWLPSIHEDYYGPRSHRPRHH 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6586348.16.4e-1973.97Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma ... [more]
OWM72858.16.9e-0540.20hypothetical protein CDL15_Pgr021164 [Punica granatum] >PKI64712.1 hypothetical ... [more]
RQP03046.11.2e-0435.64hypothetical protein POPTR_018G119850 [Populus trichocarpa][more]
XP_024445403.11.2e-0435.64uncharacterized protein LOC112324937 [Populus trichocarpa][more]
KAE8126159.11.5e-0441.30hypothetical protein FH972_020903 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006830.1Lag0006830.1mRNA