Lag0006824 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006824
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Serine-rich protein-like protein
Location	chr6: 46165426 .. 46166027 (-)
RNA-Seq Expression	Lag0006824
Synteny	Lag0006824

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAACTTCTCGGAGATCAAACGGATCAGTTCTTCGATCGCTCTCACCGTCCGGGAGATTCTACGGTTACCGGAGTTCATCTCCGTCGGCGTTCGCTTCGTCGACCTCCAGTTTCTCCTCCAGATCCGCCACTTCCTTCTTTTGCAGATCGACTTCGCCGTCGCGCGTGAAGCTTCACGGTTCGTCTTCAGTTTCCGTTCCGTCGGTGCGTTTTTCTCTTGACCGTGCGACCTCTCCGAATAGATCCGTGTCCGTTTCTTCTCGCAGCGGGGGAAGAATCAAGTGGTGCAGAGGCAGAGCAGTTCGAAGAGGACGTGTATGTGTTCTCCTACGACTCACCCTGGCTCGTTCCGGTGTAGCCTCCATAAAGGTATTATTTCGCAACCTCACGCGCCGTACTCGCCGAGTAGGTTGAATGCTCGTAGATCGGCGATGACGAATTCTCTGGTTAGAATCGGAGGTGTTGAAGGTGATCTTGTGAAGCGAGCTTTAGCAGCTTTGATTCGGCCTTCTTCTCATCAGCAGCGTCGCAGAGTCGATTTTAAGCCGAAGCGTAGCCGGCTCTCGATCATGTCCAAGGCCGAAGAAACATTATAA

mRNA sequence

ATGGCGGCAACTTCTCGGAGATCAAACGGATCAGTTCTTCGATCGCTCTCACCGTCCGGGAGATTCTACGGTTACCGGAGTTCATCTCCGTCGGCGTTCGCTTCGTCGACCTCCAGTTTCTCCTCCAGATCCGCCACTTCCTTCTTTTGCAGATCGACTTCGCCGTCGCGCGTGAAGCTTCACGGTTCGTCTTCAGTTTCCGTTCCGTCGCGGGGGAAGAATCAAGTGGTGCAGAGGCAGAGCAGTTCGAAGAGGACGTGTATGTGTTCTCCTACGACTCACCCTGGCTCGTTCCGGTGTAGCCTCCATAAAGGTATTATTTCGCAACCTCACGCGCCGTACTCGCCGAGTAGGTTGAATGCTCGTAGATCGGCGATGACGAATTCTCTGGTTAGAATCGGAGGTGTTGAAGGTGATCTTGTGAAGCGAGCTTTAGCAGCTTTGATTCGGCCTTCTTCTCATCAGCAGCGTCGCAGAGTCGATTTTAAGCCGAAGCGTAGCCGGCTCTCGATCATGTCCAAGGCCGAAGAAACATTATAA

Coding sequence (CDS)

ATGGCGGCAACTTCTCGGAGATCAAACGGATCAGTTCTTCGATCGCTCTCACCGTCCGGGAGATTCTACGGTTACCGGAGTTCATCTCCGTCGGCGTTCGCTTCGTCGACCTCCAGTTTCTCCTCCAGATCCGCCACTTCCTTCTTTTGCAGATCGACTTCGCCGTCGCGCGTGAAGCTTCACGGTTCGTCTTCAGTTTCCGTTCCGTCGCGGGGGAAGAATCAAGTGGTGCAGAGGCAGAGCAGTTCGAAGAGGACGTGTATGTGTTCTCCTACGACTCACCCTGGCTCGTTCCGGTGTAGCCTCCATAAAGGTATTATTTCGCAACCTCACGCGCCGTACTCGCCGAGTAGGTTGAATGCTCGTAGATCGGCGATGACGAATTCTCTGGTTAGAATCGGAGGTGTTGAAGGTGATCTTGTGAAGCGAGCTTTAGCAGCTTTGATTCGGCCTTCTTCTCATCAGCAGCGTCGCAGAGTCGATTTTAAGCCGAAGCGTAGCCGGCTCTCGATCATGTCCAAGGCCGAAGAAACATTATAA

Protein sequence

MAATSRRSNGSVLRSLSPSGRFYGYRSSSPSAFASSTSSFSSRSATSFFCRSTSPSRVKLHGSSSVSVPSRGKNQVVQRQSSSKRTCMCSPTTHPGSFRCSLHKGIISQPHAPYSPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRRVDFKPKRSRLSIMSKAEETL

Homology

[Close]

BLAST of Lag0006824 vs. NCBI nr
Match: XP_022965947.1 (uncharacterized protein LOC111465673 [Cucurbita maxima])

HSP 1 Score: 296.6 bits (758), Expect = 1.5e-76
Identity = 168/200 (84.00%), Postives = 172/200 (86.00%), Query Frame = 0


Query: 1   MAATSRRSNGSVLRSLSPSGRFYGYRSSSPSAFASSTSSFSSRSATSFFCRSTSPSRVKL 60
           MAATSRRSNGSVLRS SPS RFYGYR+SSPSAFASSTSSFSS SATSFFCRSTSPSRVK+
Sbjct: 1   MAATSRRSNGSVLRSFSPSERFYGYRNSSPSAFASSTSSFSSGSATSFFCRSTSPSRVKV 60

Query: 61  HGSSSVSVP---------------------SRGKNQVVQRQSSSKRTCMCSPTTHPGSFR 120
           HGSSSVSVP                     S GKNQVV+RQSSSKRTCMCSPTTHPGSFR
Sbjct: 61  HGSSSVSVPSVRFYVDRAISPNRSVSVSSRSSGKNQVVKRQSSSKRTCMCSPTTHPGSFR 120

Query: 121 CSLHKGIISQPHAPYSPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR 180
           CSLHKGIISQPHAPYSPSRL+ARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR
Sbjct: 121 CSLHKGIISQPHAPYSPSRLSARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR 180

[Close]

BLAST of Lag0006824 vs. NCBI nr
Match: XP_022937837.1 (uncharacterized protein LOC111444107 [Cucurbita moschata])

HSP 1 Score: 294.7 bits (753), Expect = 5.5e-76
Identity = 167/200 (83.50%), Postives = 171/200 (85.50%), Query Frame = 0


Query: 1   MAATSRRSNGSVLRSLSPSGRFYGYRSSSPSAFASSTSSFSSRSATSFFCRSTSPSRVKL 60
           MAATSRRSNGSVLRS SPS RFYGYR+SSPSAFASSTSSFSS SATSFFCRSTSPSRVK+
Sbjct: 1   MAATSRRSNGSVLRSFSPSERFYGYRNSSPSAFASSTSSFSSGSATSFFCRSTSPSRVKV 60

Query: 61  HGSSSVSVPS---------------------RGKNQVVQRQSSSKRTCMCSPTTHPGSFR 120
           HGSSSVSVPS                      GKNQVV+RQ+SSKRTCMCSPTTHPGSFR
Sbjct: 61  HGSSSVSVPSVRFYVDRAISPNRSVSVSSRGGGKNQVVKRQNSSKRTCMCSPTTHPGSFR 120

Query: 121 CSLHKGIISQPHAPYSPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR 180
           CSLHKGIISQPHAPY PSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR
Sbjct: 121 CSLHKGIISQPHAPYLPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR 180

[Close]

BLAST of Lag0006824 vs. NCBI nr
Match: KAG6586344.1 (hypothetical protein SDJN03_19077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021190.1 hypothetical protein SDJN02_17878, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.9 bits (751), Expect = 9.4e-76
Identity = 167/200 (83.50%), Postives = 171/200 (85.50%), Query Frame = 0


Query: 1   MAATSRRSNGSVLRSLSPSGRFYGYRSSSPSAFASSTSSFSSRSATSFFCRSTSPSRVKL 60
           MAATSRRSNGSVLRS S S RFYGYR+SSPSAFASSTSSFSS SATSFFCRSTSPSRVK+
Sbjct: 1   MAATSRRSNGSVLRSFSSSERFYGYRNSSPSAFASSTSSFSSGSATSFFCRSTSPSRVKV 60

Query: 61  HGSSSVSVP---------------------SRGKNQVVQRQSSSKRTCMCSPTTHPGSFR 120
           HGSSSVSVP                     S GKNQVV+RQSSSKRTCMCSPTTHPGSFR
Sbjct: 61  HGSSSVSVPSVRFYVDRAISPNRSVSVSSRSGGKNQVVKRQSSSKRTCMCSPTTHPGSFR 120

Query: 121 CSLHKGIISQPHAPYSPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR 180
           CSLHKGIISQPHAPYSPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR
Sbjct: 121 CSLHKGIISQPHAPYSPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR 180

[Close]

BLAST of Lag0006824 vs. NCBI nr
Match: XP_022142974.1 (uncharacterized protein LOC111012972 [Momordica charantia])

HSP 1 Score: 291.6 bits (745), Expect = 4.7e-75
Identity = 164/194 (84.54%), Postives = 169/194 (87.11%), Query Frame = 0


Query: 1   MAATSRRSNGSVLRSLSPSGRFYGYRSSSPSAFASSTSSFSSRSATSFFCRSTSPSRVKL 60
           MAATSRRSNGSVLRSLSPSGRFY  RSSSPSAFASS+SSFSS SATSFFCRSTSPSRVKL
Sbjct: 1   MAATSRRSNGSVLRSLSPSGRFYNCRSSSPSAFASSSSSFSSTSATSFFCRSTSPSRVKL 60

Query: 61  HGSSSVSVP---------------SRGKNQVVQRQSSSKRTCMCSPTTHPGSFRCSLHKG 120
           HGSS VSVP               S G  QVVQR+SSSKRTCMCSPTTHPGSFRCSLHKG
Sbjct: 61  HGSSPVSVPSVRFALHSSVSVSSRSGGNVQVVQRRSSSKRTCMCSPTTHPGSFRCSLHKG 120

Query: 121 IISQPHAPYSPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRRVDFKPK 180
           I+SQ HAPYSP+RLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR DFKPK
Sbjct: 121 IVSQSHAPYSPNRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRRADFKPK 180

[Close]

BLAST of Lag0006824 vs. NCBI nr
Match: XP_038890503.1 (uncharacterized protein LOC120080038 [Benincasa hispida])

HSP 1 Score: 291.2 bits (744), Expect = 6.1e-75
Identity = 166/200 (83.00%), Postives = 170/200 (85.00%), Query Frame = 0


Query: 1   MAATSRRSNGSVLRSLSPSGRFYGYRSSSPSAFASSTSSFSSRSATSFFCRSTSPSRVKL 60
           MAATSRRSN SVLRSLSPSGRFYGYRSSS SAFASS+SSFSS SATSFFCRSTSPSRVKL
Sbjct: 1   MAATSRRSNASVLRSLSPSGRFYGYRSSSSSAFASSSSSFSSGSATSFFCRSTSPSRVKL 60

Query: 61  HGSSSVSVP---------------------SRGKNQVVQRQSSSKRTCMCSPTTHPGSFR 120
           HGS SVSVP                     S G ++VVQRQSSSKRTCMCSPTTHPGSFR
Sbjct: 61  HGSPSVSVPSVRFSLDRATSPNRSVSVSSRSGGSHRVVQRQSSSKRTCMCSPTTHPGSFR 120

Query: 121 CSLHKGIISQPHAPYSPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR 180
           CSLHKGIISQP  PYSPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR
Sbjct: 121 CSLHKGIISQPTVPYSPSRLNARRSAMTNSLVRIGGVEGDLVKRALAALIRPSSHQQRRR 180

The following BLAST results are available for this feature:

BLAST of Lag0006824 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965947.1	1.5e-76	84.00	uncharacterized protein LOC111465673 [Cucurbita maxima]	[more]
XP_022937837.1	5.5e-76	83.50	uncharacterized protein LOC111444107 [Cucurbita moschata]	[more]
KAG6586344.1	9.4e-76	83.50	hypothetical protein SDJN03_19077, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022142974.1	4.7e-75	84.54	uncharacterized protein LOC111012972 [Momordica charantia]	[more]
XP_038890503.1	6.1e-75	83.00	uncharacterized protein LOC120080038 [Benincasa hispida]	[more]

BLAST of Lag0006824 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..88
None	No IPR available	PANTHER	PTHR33132:SF75	SUBFAMILY NOT NAMED	coord: 78..177
None	No IPR available	PANTHER	PTHR33132:SF75	SUBFAMILY NOT NAMED	coord: 1..70
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 78..177
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006824.1	Lag0006824.1	mRNA