Lag0006802 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006802
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAT-hook motif nuclear-localized protein
Locationchr6: 45962405 .. 45963273 (-)
RNA-Seq ExpressionLag0006802
SyntenyLag0006802
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAAGTCCCACCACATCGCCGACCAATGGCCTTTTACCCTCCACCCACCACCTCTCCTCCGCCGCTGCCGCCTCCGACGCCGGCCCCCACGTCGTTTACCCTCACTCCGTCCCCTCCGCCGCCGTCTCCTCTTCCCCTCTCGAGCCCGCCCGCCGGAAGAGAGGCCGCCCCAGGAAGTACGGCACGCCGGAGGAAGCTTTAGCGGCCAAGAAAGCTGCTACCGCCTCCTCTCACTCTTCGTCCTCCAAGGCCAAGAAGGACCTCGCTTCTTCCTCTTCCCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCCGCGCCTTCCAAGAAATCTCAGTTGGCTGCACTTGGTGGGTTCTCGTGTTTTTTTTGTTTTTGAGGAATTTCCTGTCAATTGTTTTCCCCTTGTTGGGATTTTTGTGGATTTTTCTGGGGTTCTGGAATTCGTTGTTATTTTGGGATTTCTGGGTTTTGGAATTCAATTTTCCTTTTTCTGTTTCTCTATTCGTGGTTTTTGAGATTTCTCGCTGGTTTCTGTTTTTGGAATTGGTTTTTTTTTTTTTTTTTGTTTTGTTTTGTTTTAAACCCTACTCTCAAAAGCCCTGTTAATTCCCTTGTAGTCTTTTAGCGAGTTTCCTCAATTTTTACTGTAATTTGGTTAGCAATAGCGTTCCGCTTATGATAGTTTTTAGTTTATTTCCGAAAACAACTTGGAAATTGTGAAAATCGTATCTGAATTTTTGTTGCATCTGACAGTGGTTTTGTGGTAATGTAGTCATTTGGGTAGAAGTTTGGAATTCTGGAATGAAGATATAG

mRNA sequence

ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAAGTCCCACCACATCGCCGACCAATGGCCTTTTACCCTCCACCCACCACCTCTCCTCCGCCGCTGCCGCCTCCGACGCCGGCCCCCACGTCGTTTACCCTCACTCCGTCCCCTCCGCCGCCGTCTCCTCTTCCCCTCTCGAGCCCGCCCGCCGGAAGAGAGGCCGCCCCAGGAAGTACGGCACGCCGGAGGAAGCTTTAGCGGCCAAGAAAGCTGCTACCGCCTCCTCTCACTCTTCGTCCTCCAAGGCCAAGAAGGACCTCGCTTCTTCCTCTTCCCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCCGCGCCTTCCAAGAAATCTCAGTTGGCTGCACTTGTCATTTGGGTAGAAGTTTGGAATTCTGGAATGAAGATATAG

Coding sequence (CDS)

ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAAGTCCCACCACATCGCCGACCAATGGCCTTTTACCCTCCACCCACCACCTCTCCTCCGCCGCTGCCGCCTCCGACGCCGGCCCCCACGTCGTTTACCCTCACTCCGTCCCCTCCGCCGCCGTCTCCTCTTCCCCTCTCGAGCCCGCCCGCCGGAAGAGAGGCCGCCCCAGGAAGTACGGCACGCCGGAGGAAGCTTTAGCGGCCAAGAAAGCTGCTACCGCCTCCTCTCACTCTTCGTCCTCCAAGGCCAAGAAGGACCTCGCTTCTTCCTCTTCCCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCCGCGCCTTCCAAGAAATCTCAGTTGGCTGCACTTGTCATTTGGGTAGAAGTTTGGAATTCTGGAATGAAGATATAG

Protein sequence

MEPNENQLSSYFHHHQHHHQSPTTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSASSSFSAPSKKSQLAALVIWVEVWNSGMKI
Homology
[Close]
BLAST of Lag0006802 vs. NCBI nr
Match: XP_008456410.1 (PREDICTED: AT-hook motif nuclear-localized protein 14 isoform X1 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-55
Identity = 131/145 (90.34%), Postives = 137/145 (94.48%), Query Frame = 0 

Query: 1   MEPNENQLSSYFHHHQHHHQSP-TTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSA 60
           MEPNENQLSSYFHHHQHHHQ+P TTSPTNGLLP THHLS+AAA+SDAGPHVVYPHSVPSA
Sbjct: 1   MEPNENQLSSYFHHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPHVVYPHSVPSA 60

Query: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSAS 120
           AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKK+LASSSSLNAVSAS
Sbjct: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSAS 120

Query: 121 SSFSAPSKKSQLAALVIWVEVWNSG 145
           SSFS PSKKSQLAAL    +V N+G
Sbjct: 121 SSFSTPSKKSQLAAL----DVGNAG 141

[Close]
BLAST of Lag0006802 vs. NCBI nr
Match: XP_004139392.1 (AT-hook motif nuclear-localized protein 14 [Cucumis sativus] >KGN60789.2 hypothetical protein Csa_019316 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MEPNENQLSSYFHHHQHHHQSP-TTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSA 60
           MEPNENQLSSYFHHHQHHHQ+P TTSPTNGLLP THHLS+AAA+SDAGPHVVYPHSVPSA
Sbjct: 1   MEPNENQLSSYFHHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPHVVYPHSVPSA 60

Query: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSAS 120
           AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKK+LASSSSLNAVSAS
Sbjct: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSAS 120

Query: 121 SSFSAPSKKSQLAAL 135
           SSFS PSKKSQLAAL
Sbjct: 121 SSFSTPSKKSQLAAL 135

[Close]
BLAST of Lag0006802 vs. NCBI nr
Match: KAA0063571.1 (AT-hook motif nuclear-localized protein 14 [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MEPNENQLSSYFHHHQHHHQSP-TTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSA 60
           MEPNENQLSSYFHHHQHHHQ+P TTSPTNGLLP THHLS+AAA+SDAGPHVVYPHSVPSA
Sbjct: 1   MEPNENQLSSYFHHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPHVVYPHSVPSA 60

Query: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSAS 120
           AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKK+LASSSSLNAVSAS
Sbjct: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSAS 120

Query: 121 SSFSAPSKKSQLAAL 135
           SSFS PSKKSQLAAL
Sbjct: 121 SSFSTPSKKSQLAAL 135

[Close]
BLAST of Lag0006802 vs. NCBI nr
Match: XP_008456418.1 (PREDICTED: AT-hook motif nuclear-localized protein 14 isoform X2 [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MEPNENQLSSYFHHHQHHHQSP-TTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSA 60
           MEPNENQLSSYFHHHQHHHQ+P TTSPTNGLLP THHLS+AAA+SDAGPHVVYPHSVPSA
Sbjct: 1   MEPNENQLSSYFHHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPHVVYPHSVPSA 60

Query: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSAS 120
           AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKK+LASSSSLNAVSAS
Sbjct: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSAS 120

Query: 121 SSFSAPSKKSQLAAL 135
           SSFS PSKKSQLAAL
Sbjct: 121 SSFSTPSKKSQLAAL 135

[Close]
BLAST of Lag0006802 vs. NCBI nr
Match: XP_038890429.1 (AT-hook motif nuclear-localized protein 14 [Benincasa hispida])

HSP 1 Score: 223.4 bits (568), Expect = 1.3e-54
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 1   MEPNENQLSSYFHHHQHHHQSP-TTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSA 60
           MEPNENQLSSYFHHHQHHHQSP TTSPTNGLLP THHLSS AAASDAGPHVVYPHSVPSA
Sbjct: 1   MEPNENQLSSYFHHHQHHHQSPTTTSPTNGLLPPTHHLSS-AAASDAGPHVVYPHSVPSA 60

Query: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSAS 120
           AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKK+LASSSSLNAVSAS
Sbjct: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSAS 120

Query: 121 SSFSAPSKKSQLAAL 135
           SSFSAPSKKSQLA L
Sbjct: 121 SSFSAPSKKSQLATL 134

[Close]
BLAST of Lag0006802 vs. ExPASy Swiss-Prot
Match: A1L4X7 (AT-hook motif nuclear-localized protein 14 OS=Arabidopsis thaliana OX=3702 GN=AHL14 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-13
Identity = 67/142 (47.18%), Postives = 88/142 (61.97%), Query Frame = 0 

Query: 9   SSYFHHH-QHHHQSPTT------------SPTNGLL---PSTHHLSSAAAASDAGPHVVY 68
           S YFHH  QHHH  PTT            S  NGL    P   H  +  ++S A    VY
Sbjct: 33  SPYFHHQLQHHHHLPTTVATTASTGNAVPSSNNGLFPPQPQPQHQPNDGSSSLA----VY 92

Query: 69  PHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSS 128
           PHSVPS+AV ++P+EP +RKRGRPRKY TPE+ALAAKK A+++S SSS+K +++LA+ + 
Sbjct: 93  PHSVPSSAV-TAPMEPVKRKRGRPRKYVTPEQALAAKKLASSAS-SSSAKQRRELAAVTG 152

Query: 129 LNAVSASSSFSAPSKKSQLAAL 135
                  S+ S  SKKSQL ++
Sbjct: 153 ----GTVSTNSGSSKKSQLGSV 164

The following BLAST results are available for this feature:
BLAST of Lag0006802 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456410.11.2e-5590.34PREDICTED: AT-hook motif nuclear-localized protein 14 isoform X1 [Cucumis melo][more]
XP_004139392.12.6e-5594.81AT-hook motif nuclear-localized protein 14 [Cucumis sativus] >KGN60789.2 hypothe... [more]
KAA0063571.12.6e-5594.81AT-hook motif nuclear-localized protein 14 [Cucumis melo var. makuwa][more]
XP_008456418.12.6e-5594.81PREDICTED: AT-hook motif nuclear-localized protein 14 isoform X2 [Cucumis melo][more]
XP_038890429.11.3e-5496.30AT-hook motif nuclear-localized protein 14 [Benincasa hispida][more]
BLAST of Lag0006802 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A1L4X74.3e-1347.18AT-hook motif nuclear-localized protein 14 OS=Arabidopsis thaliana OX=3702 GN=AH... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..40
NoneNo IPR availablePANTHERPTHR31500:SF68AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14coord: 1..134
IPR039605AT-hook motif nuclear-localized proteinPANTHERPTHR31500AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9coord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006802.1Lag0006802.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003680 minor groove of adenine-thymine-rich DNA binding