Lag0006802 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006802
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	AT-hook motif nuclear-localized protein
Location	chr6: 45962405 .. 45963273 (-)
RNA-Seq Expression	Lag0006802
Synteny	Lag0006802

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAAGTCCCACCACATCGCCGACCAATGGCCTTTTACCCTCCACCCACCACCTCTCCTCCGCCGCTGCCGCCTCCGACGCCGGCCCCCACGTCGTTTACCCTCACTCCGTCCCCTCCGCCGCCGTCTCCTCTTCCCCTCTCGAGCCCGCCCGCCGGAAGAGAGGCCGCCCCAGGAAGTACGGCACGCCGGAGGAAGCTTTAGCGGCCAAGAAAGCTGCTACCGCCTCCTCTCACTCTTCGTCCTCCAAGGCCAAGAAGGACCTCGCTTCTTCCTCTTCCCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCCGCGCCTTCCAAGAAATCTCAGTTGGCTGCACTTGGTGGGTTCTCGTGTTTTTTTTGTTTTTGAGGAATTTCCTGTCAATTGTTTTCCCCTTGTTGGGATTTTTGTGGATTTTTCTGGGGTTCTGGAATTCGTTGTTATTTTGGGATTTCTGGGTTTTGGAATTCAATTTTCCTTTTTCTGTTTCTCTATTCGTGGTTTTTGAGATTTCTCGCTGGTTTCTGTTTTTGGAATTGGTTTTTTTTTTTTTTTTTGTTTTGTTTTGTTTTAAACCCTACTCTCAAAAGCCCTGTTAATTCCCTTGTAGTCTTTTAGCGAGTTTCCTCAATTTTTACTGTAATTTGGTTAGCAATAGCGTTCCGCTTATGATAGTTTTTAGTTTATTTCCGAAAACAACTTGGAAATTGTGAAAATCGTATCTGAATTTTTGTTGCATCTGACAGTGGTTTTGTGGTAATGTAGTCATTTGGGTAGAAGTTTGGAATTCTGGAATGAAGATATAG

mRNA sequence

ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAAGTCCCACCACATCGCCGACCAATGGCCTTTTACCCTCCACCCACCACCTCTCCTCCGCCGCTGCCGCCTCCGACGCCGGCCCCCACGTCGTTTACCCTCACTCCGTCCCCTCCGCCGCCGTCTCCTCTTCCCCTCTCGAGCCCGCCCGCCGGAAGAGAGGCCGCCCCAGGAAGTACGGCACGCCGGAGGAAGCTTTAGCGGCCAAGAAAGCTGCTACCGCCTCCTCTCACTCTTCGTCCTCCAAGGCCAAGAAGGACCTCGCTTCTTCCTCTTCCCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCCGCGCCTTCCAAGAAATCTCAGTTGGCTGCACTTGTCATTTGGGTAGAAGTTTGGAATTCTGGAATGAAGATATAG

Coding sequence (CDS)

ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAAGTCCCACCACATCGCCGACCAATGGCCTTTTACCCTCCACCCACCACCTCTCCTCCGCCGCTGCCGCCTCCGACGCCGGCCCCCACGTCGTTTACCCTCACTCCGTCCCCTCCGCCGCCGTCTCCTCTTCCCCTCTCGAGCCCGCCCGCCGGAAGAGAGGCCGCCCCAGGAAGTACGGCACGCCGGAGGAAGCTTTAGCGGCCAAGAAAGCTGCTACCGCCTCCTCTCACTCTTCGTCCTCCAAGGCCAAGAAGGACCTCGCTTCTTCCTCTTCCCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCCGCGCCTTCCAAGAAATCTCAGTTGGCTGCACTTGTCATTTGGGTAGAAGTTTGGAATTCTGGAATGAAGATATAG

Protein sequence

MEPNENQLSSYFHHHQHHHQSPTTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSASSSFSAPSKKSQLAALVIWVEVWNSGMKI

Homology

[Close]

BLAST of Lag0006802 vs. NCBI nr
Match: XP_008456410.1 (PREDICTED: AT-hook motif nuclear-localized protein 14 isoform X1 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-55
Identity = 131/145 (90.34%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MEPNENQLSSYFHHHQHHHQSP-TTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSA 60
           MEPNENQLSSYFHHHQHHHQ+P TTSPTNGLLP THHLS+AAA+SDAGPHVVYPHSVPSA
Sbjct: 1   MEPNENQLSSYFHHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPHVVYPHSVPSA 60

Query: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSAS 120
           AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKK+LASSSSLNAVSAS
Sbjct: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSAS 120

Query: 121 SSFSAPSKKSQLAALVIWVEVWNSG 145
           SSFS PSKKSQLAAL    +V N+G
Sbjct: 121 SSFSTPSKKSQLAAL----DVGNAG 141

[Close]

BLAST of Lag0006802 vs. NCBI nr
Match: XP_004139392.1 (AT-hook motif nuclear-localized protein 14 [Cucumis sativus] >KGN60789.2 hypothetical protein Csa_019316 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MEPNENQLSSYFHHHQHHHQSP-TTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSA 60
           MEPNENQLSSYFHHHQHHHQ+P TTSPTNGLLP THHLS+AAA+SDAGPHVVYPHSVPSA
Sbjct: 1   MEPNENQLSSYFHHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPHVVYPHSVPSA 60

Query: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSAS 120
           AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKK+LASSSSLNAVSAS
Sbjct: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSAS 120

Query: 121 SSFSAPSKKSQLAAL 135
           SSFS PSKKSQLAAL
Sbjct: 121 SSFSTPSKKSQLAAL 135

[Close]

BLAST of Lag0006802 vs. NCBI nr
Match: KAA0063571.1 (AT-hook motif nuclear-localized protein 14 [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MEPNENQLSSYFHHHQHHHQSP-TTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSA 60
           MEPNENQLSSYFHHHQHHHQ+P TTSPTNGLLP THHLS+AAA+SDAGPHVVYPHSVPSA
Sbjct: 1   MEPNENQLSSYFHHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPHVVYPHSVPSA 60

Query: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSAS 120
           AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKK+LASSSSLNAVSAS
Sbjct: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSAS 120

Query: 121 SSFSAPSKKSQLAAL 135
           SSFS PSKKSQLAAL
Sbjct: 121 SSFSTPSKKSQLAAL 135

[Close]

BLAST of Lag0006802 vs. NCBI nr
Match: XP_008456418.1 (PREDICTED: AT-hook motif nuclear-localized protein 14 isoform X2 [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MEPNENQLSSYFHHHQHHHQSP-TTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSA 60
           MEPNENQLSSYFHHHQHHHQ+P TTSPTNGLLP THHLS+AAA+SDAGPHVVYPHSVPSA
Sbjct: 1   MEPNENQLSSYFHHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPHVVYPHSVPSA 60

Query: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSAS 120
           AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKK+LASSSSLNAVSAS
Sbjct: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSAS 120

Query: 121 SSFSAPSKKSQLAAL 135
           SSFS PSKKSQLAAL
Sbjct: 121 SSFSTPSKKSQLAAL 135

[Close]

BLAST of Lag0006802 vs. NCBI nr
Match: XP_038890429.1 (AT-hook motif nuclear-localized protein 14 [Benincasa hispida])

HSP 1 Score: 223.4 bits (568), Expect = 1.3e-54
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MEPNENQLSSYFHHHQHHHQSP-TTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSA 60
           MEPNENQLSSYFHHHQHHHQSP TTSPTNGLLP THHLSS AAASDAGPHVVYPHSVPSA
Sbjct: 1   MEPNENQLSSYFHHHQHHHQSPTTTSPTNGLLPPTHHLSS-AAASDAGPHVVYPHSVPSA 60

Query: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSAS 120
           AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKK+LASSSSLNAVSAS
Sbjct: 61  AVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSAS 120

Query: 121 SSFSAPSKKSQLAAL 135
           SSFSAPSKKSQLA L
Sbjct: 121 SSFSAPSKKSQLATL 134

[Close]

BLAST of Lag0006802 vs. ExPASy Swiss-Prot
Match: A1L4X7 (AT-hook motif nuclear-localized protein 14 OS=Arabidopsis thaliana OX=3702 GN=AHL14 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-13
Identity = 67/142 (47.18%), Postives = 88/142 (61.97%), Query Frame = 0


Query: 9   SSYFHHH-QHHHQSPTT------------SPTNGLL---PSTHHLSSAAAASDAGPHVVY 68
           S YFHH  QHHH  PTT            S  NGL    P   H  +  ++S A    VY
Sbjct: 33  SPYFHHQLQHHHHLPTTVATTASTGNAVPSSNNGLFPPQPQPQHQPNDGSSSLA----VY 92

Query: 69  PHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSS 128
           PHSVPS+AV ++P+EP +RKRGRPRKY TPE+ALAAKK A+++S SSS+K +++LA+ + 
Sbjct: 93  PHSVPSSAV-TAPMEPVKRKRGRPRKYVTPEQALAAKKLASSAS-SSSAKQRRELAAVTG 152

Query: 129 LNAVSASSSFSAPSKKSQLAAL 135
                  S+ S  SKKSQL ++
Sbjct: 153 ----GTVSTNSGSSKKSQLGSV 164

The following BLAST results are available for this feature:

BLAST of Lag0006802 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456410.1	1.2e-55	90.34	PREDICTED: AT-hook motif nuclear-localized protein 14 isoform X1 [Cucumis melo]	[more]
XP_004139392.1	2.6e-55	94.81	AT-hook motif nuclear-localized protein 14 [Cucumis sativus] >KGN60789.2 hypothe...	[more]
KAA0063571.1	2.6e-55	94.81	AT-hook motif nuclear-localized protein 14 [Cucumis melo var. makuwa]	[more]
XP_008456418.1	2.6e-55	94.81	PREDICTED: AT-hook motif nuclear-localized protein 14 isoform X2 [Cucumis melo]	[more]
XP_038890429.1	1.3e-54	96.30	AT-hook motif nuclear-localized protein 14 [Benincasa hispida]	[more]

BLAST of Lag0006802 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1L4X7	4.3e-13	47.18	AT-hook motif nuclear-localized protein 14 OS=Arabidopsis thaliana OX=3702 GN=AH...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..40
None	No IPR available	PANTHER	PTHR31500:SF68	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14	coord: 1..134
IPR039605	AT-hook motif nuclear-localized protein	PANTHER	PTHR31500	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	coord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006802.1	Lag0006802.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003680	minor groove of adenine-thymine-rich DNA binding