Lag0006791 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006791
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPhosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
Locationchr6: 45826309 .. 45826626 (+)
RNA-Seq ExpressionLag0006791
SyntenyLag0006791
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACGGCGGCGTTCGTTTTCGTTTTTCTCTGTGTTCTCCACTTGTCGGCGGCCAGGGTTTTGACCGGAGAGCGGTGGCGGCCGGCGCCCATGGCGGTGCTGCGAGGTTCGGTGCCTCCTTCTGGTAAGAATCCCTGTTCGTTTATTCCTGGGCTTGGCCGTGGACGCTGCACGTTGAGCGAGGTGGAAGACGGCGCTGGAGAAGCCGCCGTCCACGGCGGCTCCTCCGCCTTCCCTGGCCTGAATGTTGATGGGTTTGCAGCGGCTTCCATGATTAACCAAACCCAGAAGGAAGATCCTTCTTTGAGCTCTTGA

mRNA sequence

ATGAAGACGGCGGCGTTCGTTTTCGTTTTTCTCTGTGTTCTCCACTTGTCGGCGGCCAGGGTTTTGACCGGAGAGCGGTGGCGGCCGGCGCCCATGGCGGTGCTGCGAGGTTCGGTGCCTCCTTCTGGTAAGAATCCCTGTTCGTTTATTCCTGGGCTTGGCCGTGGACGCTGCACGTTGAGCGAGGTGGAAGACGGCGCTGGAGAAGCCGCCGTCCACGGCGGCTCCTCCGCCTTCCCTGGCCTGAATGTTGATGGGTTTGCAGCGGCTTCCATGATTAACCAAACCCAGAAGGAAGATCCTTCTTTGAGCTCTTGA

Coding sequence (CDS)

ATGAAGACGGCGGCGTTCGTTTTCGTTTTTCTCTGTGTTCTCCACTTGTCGGCGGCCAGGGTTTTGACCGGAGAGCGGTGGCGGCCGGCGCCCATGGCGGTGCTGCGAGGTTCGGTGCCTCCTTCTGGTAAGAATCCCTGTTCGTTTATTCCTGGGCTTGGCCGTGGACGCTGCACGTTGAGCGAGGTGGAAGACGGCGCTGGAGAAGCCGCCGTCCACGGCGGCTCCTCCGCCTTCCCTGGCCTGAATGTTGATGGGTTTGCAGCGGCTTCCATGATTAACCAAACCCAGAAGGAAGATCCTTCTTTGAGCTCTTGA

Protein sequence

MKTAAFVFVFLCVLHLSAARVLTGERWRPAPMAVLRGSVPPSGKNPCSFIPGLGRGRCTLSEVEDGAGEAAVHGGSSAFPGLNVDGFAAASMINQTQKEDPSLSS
Homology
BLAST of Lag0006791 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.3 bits (399), Expect = 3.6e-35
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 0

Query: 1   MKT--AAFVFVFLCVLHLSAARVLTGERWRPAPMAVLRGSVPPSGKNPCSFIPGLGRGRC 60
           MKT  AAFVF+ LC+ H+SAARVLTGERWRP    +LRG VPPSG+NPCSFIPGLGRGRC
Sbjct: 6   MKTPAAAFVFILLCIFHVSAARVLTGERWRPVSDRMLRGLVPPSGRNPCSFIPGLGRGRC 65

Query: 61  TLSEVEDGAGEAAVHGGSSAFPGLNVDGFAAASMINQTQKEDPSL 104
           TLSEVED AG     GGSSAFPG+N DGF+AA+M+N TQK+DPSL
Sbjct: 66  TLSEVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQDPSL 110

BLAST of Lag0006791 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-31
Identity = 73/108 (67.59%), Postives = 88/108 (81.48%), Query Frame = 0

Query: 1   MKTAAFVFVFLCVLHLSAARVLTGERWRP---APMAVLRGSVPPSGKNPCSFIPGLGRGR 60
           MKT AF+F+FL ++ +SAARVL GERW P    P A+LRG VP S +NPCSFIPG  RGR
Sbjct: 6   MKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGR 65

Query: 61  CTLSEVEDGAGEAAVHGGSSAFPGLNVDGFAAASMINQTQKEDPSLSS 106
           CTLSEV++  G+A+V GGSSAFPGLN DGFAAAS++NQTQK+D S+SS
Sbjct: 66  CTLSEVDE--GDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

BLAST of Lag0006791 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 3.9e-29
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = 0

Query: 1   MKTAAFVFVFLCVLHLSAARVLTGERWRPAPMAVLRGSVPPSGKNPCSFIPGLGRGRCTL 60
           +KT AF+F+FL +  +S  R L G R    P+AVLRG VP S +NPCSFIPG  RGRCTL
Sbjct: 6   VKTVAFLFIFLSIFDVSVGRWLPGSR---VPIAVLRGPVPSSSRNPCSFIPGFSRGRCTL 65

Query: 61  SEVEDGAGEAAVHGGSSAFPGLNVDGFAAASMINQTQKEDPSLSS 106
           SEV+DGA  A+VHGGSSAFPGLN DGFAAASM+NQTQK+D SLSS
Sbjct: 66  SEVDDGA--ASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

BLAST of Lag0006791 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.7 bits (335), Expect = 9.6e-28
Identity = 68/91 (74.73%), Postives = 76/91 (83.52%), Query Frame = 0

Query: 16  LSAARVLTGERWRPA---PMAVLRGSVPPSGKNPCSFIPGLGRGRCTLSEVEDGAGEAAV 75
           +SAARV+TGERW PA   PMA+LRG+VP S +NPCSFIPG  RGRCTLSE +DGA  AAV
Sbjct: 1   MSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGA--AAV 60

Query: 76  HGGSSAFPGLNVDGFAAASMINQTQKEDPSL 104
           HGGSSA  GLN DGFAAASM N+TQK+DPSL
Sbjct: 61  HGGSSALSGLNADGFAAASMANKTQKKDPSL 89

BLAST of Lag0006791 vs. NCBI nr
Match: KAE9447980.1 (hypothetical protein C3L33_20131, partial [Rhododendron williamsianum] >KAG5549781.1 hypothetical protein RHGRI_014929 [Rhododendron griersonianum])

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-08
Identity = 46/109 (42.20%), Postives = 57/109 (52.29%), Query Frame = 0

Query: 4   AAFVFVFLCVLHLS-----AARVLTGERW-----RPAPMAVLRGSVPPSGKNPCSFIPGL 63
           A  +FVF  +L        A R L GE W       A  ++ RG V PSG NPC++IPG 
Sbjct: 5   AKTIFVFTVLLLFGCRENLATRPLEGEEWLNNLKTLAIQSLQRGPVTPSGSNPCTYIPGG 64

Query: 64  GRGRCTLSEVEDGAGEAAVHGGSSAFPGLNVDGFAAASMINQTQKEDPS 103
            RGRCTL+E E        H    AFPG+ V  FA AS  N ++K+D S
Sbjct: 65  KRGRCTLAENESNYSGRVGHAAPPAFPGVMVK-FAPASTANDSRKQDGS 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6586324.13.6e-3574.29hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN60782.11.9e-3167.59hypothetical protein Csa_019261 [Cucumis sativus][more]
KAA0063581.13.9e-2968.57hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790... [more]
KAG6599331.19.6e-2874.73hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE9447980.13.8e-0842.20hypothetical protein C3L33_20131, partial [Rhododendron williamsianum] >KAG55497... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 7..98
NoneNo IPR availablePANTHERPTHR33592:SF6SUBFAMILY NOT NAMEDcoord: 7..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006791.1Lag0006791.1mRNA