Lag0006759 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006759
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	FAD/NAD(P)-binding domain containing protein
Location	chr6: 45576795 .. 45577190 (-)
RNA-Seq Expression	Lag0006759
Synteny	Lag0006759

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCTTCACTCATTCCATTTCCTCTTCCTTCATTCTTCAACCTCTCAAAATCTCTAAACCTTCGATCTTCTCCTCGAAACCCTGCAGGAATTTCACTCTGATTGTAGCATGTGATTCCCAATCCAAACCCAATTCCAGACCCAAATCCAGAAAACCCGCCATGGATGGCCACAAACCCACCTCCAAATTCCGTAGAAAATCATCATACGGTACCTCAAGGAGGTCGATTCTGAAGAAAACTTTCAGTCAGGAGCAAGTGACCTTCACTTCTGCTCTCTCCGATGACCCCCTTGTCGCCATTATTGGCGGTGGCATGGCAGGCATTATGTGTGCTCTGAGTTTGGAGAAAAGGGGTGTTCGCTCCACTGTCTTTGATACGGTTGGTTATTAG

mRNA sequence

ATGTCTTCCTTCACTCATTCCATTTCCTCTTCCTTCATTCTTCAACCTCTCAAAATCTCTAAACCTTCGATCTTCTCCTCGAAACCCTGCAGGAATTTCACTCTGATTGTAGCATGTGATTCCCAATCCAAACCCAATTCCAGACCCAAATCCAGAAAACCCGCCATGGATGGCCACAAACCCACCTCCAAATTCCGTAGAAAATCATCATACGGTACCTCAAGGAGGTCGATTCTGAAGAAAACTTTCAGTCAGGAGCAAGTGACCTTCACTTCTGCTCTCTCCGATGACCCCCTTGTCGCCATTATTGGCGGTGGCATGGCAGGCATTATGTGTGCTCTGAGTTTGGAGAAAAGGGGTGTTCGCTCCACTGTCTTTGATACGGTTGGTTATTAG

Coding sequence (CDS)

ATGTCTTCCTTCACTCATTCCATTTCCTCTTCCTTCATTCTTCAACCTCTCAAAATCTCTAAACCTTCGATCTTCTCCTCGAAACCCTGCAGGAATTTCACTCTGATTGTAGCATGTGATTCCCAATCCAAACCCAATTCCAGACCCAAATCCAGAAAACCCGCCATGGATGGCCACAAACCCACCTCCAAATTCCGTAGAAAATCATCATACGGTACCTCAAGGAGGTCGATTCTGAAGAAAACTTTCAGTCAGGAGCAAGTGACCTTCACTTCTGCTCTCTCCGATGACCCCCTTGTCGCCATTATTGGCGGTGGCATGGCAGGCATTATGTGTGCTCTGAGTTTGGAGAAAAGGGGTGTTCGCTCCACTGTCTTTGATACGGTTGGTTATTAG

Protein sequence

MSSFTHSISSSFILQPLKISKPSIFSSKPCRNFTLIVACDSQSKPNSRPKSRKPAMDGHKPTSKFRRKSSYGTSRRSILKKTFSQEQVTFTSALSDDPLVAIIGGGMAGIMCALSLEKRGVRSTVFDTVGY

Homology

[Close]

BLAST of Lag0006759 vs. NCBI nr
Match: XP_038890992.1 (renalase isoform X2 [Benincasa hispida])

HSP 1 Score: 215.7 bits (548), Expect = 2.4e-52
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MSSFTHSISSSFILQPLKISKPSIFSSKPC--RNFTLIVACDSQSKPNSRPKSRKPAMDG 60
           MSSFTH ISSS ILQPLKISKPSIFSSKP   RNFTL+VA DSQSKPNSR KSRKP MDG
Sbjct: 1   MSSFTHFISSSLILQPLKISKPSIFSSKPYRNRNFTLVVASDSQSKPNSRLKSRKPTMDG 60

Query: 61  HKPTSKFRRKSSYGTSRRSILKKTFSQEQVTFTSALSDDPLVAIIGGGMAGIMCALSLEK 120
           +KPT+KFRRKSSYGTSRRSILKKTF+QEQVTFTSA SDDPL+AIIGGGMAGIMCALSLEK
Sbjct: 61  NKPTTKFRRKSSYGTSRRSILKKTFNQEQVTFTSAFSDDPLIAIIGGGMAGIMCALSLEK 120

Query: 121 RGVRSTVFDTV 130
           RGVRSTVFDT+
Sbjct: 121 RGVRSTVFDTL 131

[Close]

BLAST of Lag0006759 vs. NCBI nr
Match: XP_038890990.1 (renalase isoform X1 [Benincasa hispida] >XP_038890991.1 renalase isoform X1 [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 3.1e-52
Identity = 116/130 (89.23%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MSSFTHSISSSFILQPLKISKPSIFSSKPC--RNFTLIVACDSQSKPNSRPKSRKPAMDG 60
           MSSFTH ISSS ILQPLKISKPSIFSSKP   RNFTL+VA DSQSKPNSR KSRKP MDG
Sbjct: 1   MSSFTHFISSSLILQPLKISKPSIFSSKPYRNRNFTLVVASDSQSKPNSRLKSRKPTMDG 60

Query: 61  HKPTSKFRRKSSYGTSRRSILKKTFSQEQVTFTSALSDDPLVAIIGGGMAGIMCALSLEK 120
           +KPT+KFRRKSSYGTSRRSILKKTF+QEQVTFTSA SDDPL+AIIGGGMAGIMCALSLEK
Sbjct: 61  NKPTTKFRRKSSYGTSRRSILKKTFNQEQVTFTSAFSDDPLIAIIGGGMAGIMCALSLEK 120

Query: 121 RGVRSTVFDT 129
           RGVRSTVFDT
Sbjct: 121 RGVRSTVFDT 130

[Close]

BLAST of Lag0006759 vs. NCBI nr
Match: XP_038890993.1 (uncharacterized protein LOC120080408 isoform X3 [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 3.1e-52
Identity = 116/130 (89.23%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MSSFTHSISSSFILQPLKISKPSIFSSKPC--RNFTLIVACDSQSKPNSRPKSRKPAMDG 60
           MSSFTH ISSS ILQPLKISKPSIFSSKP   RNFTL+VA DSQSKPNSR KSRKP MDG
Sbjct: 1   MSSFTHFISSSLILQPLKISKPSIFSSKPYRNRNFTLVVASDSQSKPNSRLKSRKPTMDG 60

Query: 61  HKPTSKFRRKSSYGTSRRSILKKTFSQEQVTFTSALSDDPLVAIIGGGMAGIMCALSLEK 120
           +KPT+KFRRKSSYGTSRRSILKKTF+QEQVTFTSA SDDPL+AIIGGGMAGIMCALSLEK
Sbjct: 61  NKPTTKFRRKSSYGTSRRSILKKTFNQEQVTFTSAFSDDPLIAIIGGGMAGIMCALSLEK 120

Query: 121 RGVRSTVFDT 129
           RGVRSTVFDT
Sbjct: 121 RGVRSTVFDT 130

[Close]

BLAST of Lag0006759 vs. NCBI nr
Match: XP_038890994.1 (renalase isoform X4 [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 3.1e-52
Identity = 116/130 (89.23%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MSSFTHSISSSFILQPLKISKPSIFSSKPC--RNFTLIVACDSQSKPNSRPKSRKPAMDG 60
           MSSFTH ISSS ILQPLKISKPSIFSSKP   RNFTL+VA DSQSKPNSR KSRKP MDG
Sbjct: 1   MSSFTHFISSSLILQPLKISKPSIFSSKPYRNRNFTLVVASDSQSKPNSRLKSRKPTMDG 60

Query: 61  HKPTSKFRRKSSYGTSRRSILKKTFSQEQVTFTSALSDDPLVAIIGGGMAGIMCALSLEK 120
           +KPT+KFRRKSSYGTSRRSILKKTF+QEQVTFTSA SDDPL+AIIGGGMAGIMCALSLEK
Sbjct: 61  NKPTTKFRRKSSYGTSRRSILKKTFNQEQVTFTSAFSDDPLIAIIGGGMAGIMCALSLEK 120

Query: 121 RGVRSTVFDT 129
           RGVRSTVFDT
Sbjct: 121 RGVRSTVFDT 130

[Close]

BLAST of Lag0006759 vs. NCBI nr
Match: KAG7030317.1 (hypothetical protein SDJN02_08664 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 1.2e-51
Identity = 114/128 (89.06%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MSSFTHSISSSFILQPLKISKPSIFSSKPCRNFTLIVACDSQSKPNSRPKSRKPAMDGHK 60
           MS FTHSISSS ILQP KI KPSIFS+KPCRNFTLIV CDSQS      KSRKPAMDG K
Sbjct: 1   MSPFTHSISSSLILQPFKIPKPSIFSAKPCRNFTLIVTCDSQS------KSRKPAMDGRK 60

Query: 61  PTSKFRRKSSYGTSRRSILKKTFSQEQVTFTSALSDDPLVAIIGGGMAGIMCALSLEKRG 120
           PTSKFRRKSSYGTSRRSILKKTFSQEQVTFTSALSDDPL+AIIGGGMAGIMCALSLEKRG
Sbjct: 61  PTSKFRRKSSYGTSRRSILKKTFSQEQVTFTSALSDDPLIAIIGGGMAGIMCALSLEKRG 120

Query: 121 VRSTVFDT 129
           VRSTVFDT
Sbjct: 121 VRSTVFDT 122

The following BLAST results are available for this feature:

BLAST of Lag0006759 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890992.1	2.4e-52	88.55	renalase isoform X2 [Benincasa hispida]	[more]
XP_038890990.1	3.1e-52	89.23	renalase isoform X1 [Benincasa hispida] >XP_038890991.1 renalase isoform X1 [Ben...	[more]
XP_038890993.1	3.1e-52	89.23	uncharacterized protein LOC120080408 isoform X3 [Benincasa hispida]	[more]
XP_038890994.1	3.1e-52	89.23	renalase isoform X4 [Benincasa hispida]	[more]
KAG7030317.1	1.2e-51	89.06	hypothetical protein SDJN02_08664 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0006759 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036188	FAD/NAD(P)-binding domain superfamily	GENE3D	3.50.50.60		coord: 66..130 e-value: 1.3E-7 score: 32.8
None	No IPR available	PFAM	PF03486	HI0933_like	coord: 100..128 e-value: 1.5E-5 score: 24.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..76
None	No IPR available	PANTHER	PTHR16128:SF8	EXPRESSED PROTEIN	coord: 44..128
None	No IPR available	PANTHER	PTHR16128	FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN	coord: 44..128
None	No IPR available	SUPERFAMILY	51971	Nucleotide-binding domain	coord: 86..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006759.1	Lag0006759.1	mRNA