Lag0006679 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006679
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAcyl carrier protein
Locationchr6: 44858172 .. 44859611 (+)
RNA-Seq ExpressionLag0006679
SyntenyLag0006679
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTTTCTTGGTAAGCAGGCAACATCCAAGCTTTCTGGTTTGAGGAGAGTTTCATTTTCTTACCAAGGGAGAAATACCTTCTCTTCTAGAAGATTACAGTCGCTTCGAATTTCTTGTACTGTAAGTCATTTATAGTTCTTTTTACTGCATGCTATTTGGGAAAACGCCAATTACTGTTGCTATATGATGTTGACTGTGCTATGGAACAGGCCAAACCAGAGACAGTTGAAAAGGTTAGCAGAATAGTGAAGAAGCAATTAGCATTGCCGGATGACTCCACTGTCAATGGCGAGTCCAAATTTTCAACGCTTGGAGCTGATTCTCTTGACACGGTAAAATTGTACTGTACCTTGCTGAGCATGTTCCATAAAAGTTCTCCTTTGCATGTCTTAATTCTTTACTCTATTTCATGCATAGGAACTTTGAACTTTAAAATATTTTAATTACGACTCTTAAATTGATATTATGTTTCTTCTATATCTGAGTCCCTACCTCTGCTGCCCGGATCATCATCAAAGATTTTTCTTTGAACAATACTTGACTACACAACCGTGTAGGAATCTTTCTCTACTTGTGAAGGTACCTGTCCACTAGTATGCAGCCAAGTATTGTTATTTTTCTTATTAAACTTCACATGCAACTCCCGAATTGGCATTACTCAAAGCCATATTTCTTCCCAATAGGACTACACTCTAGACTAACTCTATACTATTAACAATATTAACATTATAATCGAGATGCTGACATAAGATATCCAATGATGACGTATCAGTATTAATCAATGACATATTAAATAAAGGTGTAATTGAAAAAATTTCTAATCTAATGAAGAGATGCTCAAAAGTCTAGTAGTATATTTATAGTTTAATTTAATTTAAACTATTTCTTATTAAAACATCTCACGGTTATCATGGGACCATTTACCAACGTGTCTGTTCTTGCCTTTTGCTTATGGGGGTTGATGGTAAGTGTTTTGGAGTTTGGATTGGACCAGTACCATTTGAAACTTTTTGGAATTGTTTGAATAGCCGTTTTGTGATCTTTTTTTTCCTCCATTAATTGTTATTCTTTTTTCCTATGACTAGTGATTTCATAGCTCCCATGTGGAAGGCTGACCTAGTGATTGTTAGTGGGGCCAATGAGAAAAAATATAAATGGGCTTGGGGAATGAATTTAAATCCCTTTCTTCTCTTTTAATGTTTTCTTTTTTTGGGTTCATTATTCAGTTTTTTTTTTAAAAAAAAAAATGGCGTGATATTATTCTGTTTCTCATACTCAGTTTTTTTTTTTGTATGTACATGAGATCAGGTTGAGATCGTGATGGGACTTGAGGAGGAGTTTGGAATAAGCGTGGAAGAGGAGAGCGCACAGAGCATCACAACCGTTCAAGAGGCGGCAGATATGATCGAGGATCTGATCCTCAAAAAGAGTACTTAA

mRNA sequence

ATGTGCTTTCTTGGTAAGCAGGCAACATCCAAGCTTTCTGGTTTGAGGAGAGTTTCATTTTCTTACCAAGGGAGAAATACCTTCTCTTCTAGAAGATTACAGTCGCTTCGAATTTCTTGTACTGCCAAACCAGAGACAGTTGAAAAGGTTAGCAGAATAGTGAAGAAGCAATTAGCATTGCCGGATGACTCCACTGTCAATGGCGAGTCCAAATTTTCAACGCTTGGAGCTGATTCTCTTGACACGGTTGAGATCGTGATGGGACTTGAGGAGGAGTTTGGAATAAGCGTGGAAGAGGAGAGCGCACAGAGCATCACAACCGTTCAAGAGGCGGCAGATATGATCGAGGATCTGATCCTCAAAAAGAGTACTTAA

Coding sequence (CDS)

ATGTGCTTTCTTGGTAAGCAGGCAACATCCAAGCTTTCTGGTTTGAGGAGAGTTTCATTTTCTTACCAAGGGAGAAATACCTTCTCTTCTAGAAGATTACAGTCGCTTCGAATTTCTTGTACTGCCAAACCAGAGACAGTTGAAAAGGTTAGCAGAATAGTGAAGAAGCAATTAGCATTGCCGGATGACTCCACTGTCAATGGCGAGTCCAAATTTTCAACGCTTGGAGCTGATTCTCTTGACACGGTTGAGATCGTGATGGGACTTGAGGAGGAGTTTGGAATAAGCGTGGAAGAGGAGAGCGCACAGAGCATCACAACCGTTCAAGAGGCGGCAGATATGATCGAGGATCTGATCCTCAAAAAGAGTACTTAA

Protein sequence

MCFLGKQATSKLSGLRRVSFSYQGRNTFSSRRLQSLRISCTAKPETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKKST
Homology
[Close]
BLAST of Lag0006679 vs. NCBI nr
Match: XP_022965998.1 (acyl carrier protein 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 201.8 bits (512), Expect = 3.4e-48
Identity = 109/115 (94.78%), Postives = 114/115 (99.13%), Query Frame = 0 

Query: 9   TSKLSGLRRVSFSYQGRNTFSSRRLQSLRISCTAKPETVEKVSRIVKKQLALPDDSTVNG 68
           T+KLSGL+RVSFS+QGRNTFSSRRLQSL+ISC AKPETVEKVS+IVKKQLALPDDSTVNG
Sbjct: 24  TAKLSGLKRVSFSHQGRNTFSSRRLQSLQISCAAKPETVEKVSKIVKKQLALPDDSTVNG 83

Query: 69  ESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKKS 124
           ESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKKS
Sbjct: 84  ESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKKS 138

[Close]
BLAST of Lag0006679 vs. NCBI nr
Match: XP_008455529.1 (PREDICTED: acyl carrier protein 1, chloroplastic [Cucumis melo] >TYK18381.1 acyl carrier protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.7e-47
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 9   TSKLSGLRRVSFSYQGRNTFSSRRLQSLRISCTAKPETVEKVSRIVKKQLALPDDSTVNG 68
           TSKLSG R VSFSYQGRN FSSRRLQSLRISC AKPETVEKVSRIVKKQLALPDDSTVNG
Sbjct: 24  TSKLSGSRMVSFSYQGRNNFSSRRLQSLRISCAAKPETVEKVSRIVKKQLALPDDSTVNG 83

Query: 69  ESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKK 123
           ESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAAD+IEDLILKK
Sbjct: 84  ESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADLIEDLILKK 137

[Close]
BLAST of Lag0006679 vs. NCBI nr
Match: XP_038889182.1 (acyl carrier protein 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 199.5 bits (506), Expect = 1.7e-47
Identity = 109/116 (93.97%), Postives = 111/116 (95.69%), Query Frame = 0 

Query: 8   ATSKLSGLRRVSFSYQGRNTFSSRRLQSLRISCTAKPETVEKVSRIVKKQLALPDDSTVN 67
           A SK+SG + VSFSYQGRN FSSRRLQSLRISC AKPETVEKVSRIVKKQLALPDDSTVN
Sbjct: 23  AISKISGSKTVSFSYQGRNNFSSRRLQSLRISCAAKPETVEKVSRIVKKQLALPDDSTVN 82

Query: 68  GESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKKS 124
           GESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKKS
Sbjct: 83  GESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKKS 138

[Close]
BLAST of Lag0006679 vs. NCBI nr
Match: KAA0063644.1 (coiled-coil domain-containing protein SCD2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.7e-47
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 9   TSKLSGLRRVSFSYQGRNTFSSRRLQSLRISCTAKPETVEKVSRIVKKQLALPDDSTVNG 68
           TSKLSG R VSFSYQGRN FSSRRLQSLRISC AKPETVEKVSRIVKKQLALPDDSTVNG
Sbjct: 24  TSKLSGSRMVSFSYQGRNNFSSRRLQSLRISCAAKPETVEKVSRIVKKQLALPDDSTVNG 83

Query: 69  ESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKK 123
           ESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAAD+IEDLILKK
Sbjct: 84  ESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADLIEDLILKK 137

[Close]
BLAST of Lag0006679 vs. NCBI nr
Match: XP_004139206.1 (acyl carrier protein 1, chloroplastic [Cucumis sativus] >KGN60848.1 hypothetical protein Csa_019227 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 2.2e-47
Identity = 108/114 (94.74%), Postives = 111/114 (97.37%), Query Frame = 0 

Query: 9   TSKLSGLRRVSFSYQGRNTFSSRRLQSLRISCTAKPETVEKVSRIVKKQLALPDDSTVNG 68
           TSKLSG RRVSFS+QGRN FSSRRLQSLRISC AKPETVEKVS+IVKKQLALPDDSTVNG
Sbjct: 24  TSKLSGSRRVSFSFQGRNNFSSRRLQSLRISCAAKPETVEKVSKIVKKQLALPDDSTVNG 83

Query: 69  ESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKK 123
           ESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAAD+IEDLILKK
Sbjct: 84  ESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADLIEDLILKK 137

[Close]
BLAST of Lag0006679 vs. ExPASy Swiss-Prot
Match: P93092 (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca OX=3522 GN=ACP1 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.8e-34
Identity = 85/123 (69.11%), Postives = 98/123 (79.67%), Query Frame = 0 

Query: 3   FLGKQATSKLSGLRRVSFSYQGRNTFSSRRLQSLR--ISCTAKPETVEKVSRIVKKQLAL 62
           F    A S++S LR VS   +G+ +F+  R++S R  + C AKPETVEKV  IVKKQLAL
Sbjct: 14  FKASLAPSRVSNLRSVSLPIKGK-SFAPLRMRSARFVVCCAAKPETVEKVCAIVKKQLAL 73

Query: 63  PDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLIL 122
           PDDS V GESKF+TLGADSLDTVEIVMGLEEEFGI+VEEESAQSI TVQ+AAD+IE LI 
Sbjct: 74  PDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGINVEEESAQSIATVQDAADLIEKLIE 133

Query: 123 KKS 124
           KKS
Sbjct: 134 KKS 135

[Close]
BLAST of Lag0006679 vs. ExPASy Swiss-Prot
Match: P52412 (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.2e-33
Identity = 81/115 (70.43%), Postives = 91/115 (79.13%), Query Frame = 0 

Query: 8   ATSKLSGLRRVSFSYQGRNTFSSRRLQSLRISCTAKPETVEKVSRIVKKQLALPDDSTVN 67
           A  ++S LR VS     ++ FS R   SLR++C AKPETV KV  IVKKQLALPDDS V+
Sbjct: 21  APGRISSLRSVSLPVSRKSFFSRRGSFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVS 80

Query: 68  GESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKK 123
           G SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQSI TVQ+AAD+IE L+ KK
Sbjct: 81  GVSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 135

[Close]
BLAST of Lag0006679 vs. ExPASy Swiss-Prot
Match: P52414 (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-31
Identity = 83/118 (70.34%), Postives = 90/118 (76.27%), Query Frame = 0 

Query: 8   ATSKLSGLRRVSFSYQGRNTFSSRRLQS---LRISCTAKPETVEKVSRIVKKQLALPDDS 67
           A  ++S LR VS     R +F S R       R+SC AKPETV KV RIVKKQLALPDDS
Sbjct: 21  APGRISSLRSVSLPV-SRKSFPSLRSSKGSFARVSCQAKPETVAKVCRIVKKQLALPDDS 80

Query: 68  TVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKK 123
            VNG SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQSI TVQ+AAD+IE L+ KK
Sbjct: 81  EVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 137

[Close]
BLAST of Lag0006679 vs. ExPASy Swiss-Prot
Match: P52411 (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-31
Identity = 83/119 (69.75%), Postives = 92/119 (77.31%), Query Frame = 0 

Query: 8   ATSKLSGLRRVSFSYQGRNTF----SSRRLQSLRISCTAKPETVEKVSRIVKKQLALPDD 67
           A  ++S LR VS     R +F    SS+   +LR+SC AKPETV KV  IVKKQLALPDD
Sbjct: 21  APGRISSLRSVSLPV-SRKSFPSLKSSKSSFALRVSCQAKPETVAKVCGIVKKQLALPDD 80

Query: 68  STVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKK 123
           S VNG SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQSI TVQ+AAD+IE L+ KK
Sbjct: 81  SEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 138

[Close]
BLAST of Lag0006679 vs. ExPASy Swiss-Prot
Match: P52413 (Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.3 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.3e-30
Identity = 82/125 (65.60%), Postives = 91/125 (72.80%), Query Frame = 0 

Query: 2   CFLGK-QATSKLSGLRRVSFSYQGR---NTFSSRRLQSLRISCTAKPETVEKVSRIVKKQ 61
           C L + Q  S LS LR VS    G+   +  SSR   S R+ C AK ETV +V  IVKKQ
Sbjct: 18  CSLNRAQVPSGLSSLRSVSLPISGKIFPSLRSSRGPLSFRVCCQAKQETVTRVCEIVKKQ 77

Query: 62  LALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIED 121
           LALP+DS VNG SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQSI TVQ+AAD+IE 
Sbjct: 78  LALPEDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEK 137

Query: 122 LILKK 123
           L+  K
Sbjct: 138 LVGNK 142

The following BLAST results are available for this feature:
BLAST of Lag0006679 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022965998.13.4e-4894.78acyl carrier protein 1, chloroplastic-like [Cucurbita maxima][more]
XP_008455529.11.7e-4795.61PREDICTED: acyl carrier protein 1, chloroplastic [Cucumis melo] >TYK18381.1 acyl... [more]
XP_038889182.11.7e-4793.97acyl carrier protein 1, chloroplastic [Benincasa hispida][more]
KAA0063644.11.7e-4795.61coiled-coil domain-containing protein SCD2 isoform X1 [Cucumis melo var. makuwa][more]
XP_004139206.12.2e-4794.74acyl carrier protein 1, chloroplastic [Cucumis sativus] >KGN60848.1 hypothetical... [more]
BLAST of Lag0006679 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P930923.8e-3469.11Acyl carrier protein 1, chloroplastic OS=Casuarina glauca OX=3522 GN=ACP1 PE=2 S... [more]
P524124.2e-3370.43Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.2 PE=... [more]
P524141.3e-3170.34Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1 PE=3 ... [more]
P524112.3e-3169.75Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.1 PE=... [more]
P524134.3e-3065.60Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.3 PE=... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020806Polyketide synthase, phosphopantetheine-binding domainSMARTSM00823PKS_PPcoord: 47..101
e-value: 0.0062
score: 18.8
IPR036736ACP-like superfamilyGENE3D1.10.1200.10coord: 42..122
e-value: 7.1E-25
score: 88.9
IPR036736ACP-like superfamilySUPERFAMILY47336ACP-likecoord: 44..119
IPR009081Phosphopantetheine binding ACP domainPFAMPF00550PP-bindingcoord: 49..115
e-value: 9.7E-11
score: 41.9
IPR009081Phosphopantetheine binding ACP domainPROSITEPS50075CARRIERcoord: 44..119
score: 21.689711
IPR003231Acyl carrier protein (ACP)TIGRFAMTIGR00517TIGR00517coord: 45..117
e-value: 7.3E-24
score: 81.4
IPR003231Acyl carrier protein (ACP)HAMAPMF_01217Acyl_carriercoord: 45..119
score: 16.92687
NoneNo IPR availablePANTHERPTHR46153:SF7ACYL CARRIER PROTEINcoord: 4..123
IPR044813Acyl carrier protein, chloroplasticPANTHERPTHR46153ACYL CARRIER PROTEINcoord: 4..123
IPR006162Phosphopantetheine attachment sitePROSITEPS00012PHOSPHOPANTETHEINEcoord: 74..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006679.1Lag0006679.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0006633 fatty acid biosynthetic process
cellular_component GO:0009507 chloroplast
molecular_function GO:0000036 acyl carrier activity
molecular_function GO:0031177 phosphopantetheine binding