Lag0006663 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006663
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr6: 44670364 .. 44670820 (+)
RNA-Seq Expression	Lag0006663
Synteny	Lag0006663

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGATCAACGTACGACACTGCGAGAGATGCATACATAAGTTATATTTTTTAGTAATTTAGTTTTTGTTCTTTATATTTTTCGTTTGACCCTATTACATTATGAATATAGTTGGAAATGGACGAGCTACAAAAAGCATCATCAGAAGAAGGGTCTGAGTCAATCTCGCAGTGAGGTTTGCAAACAAGTTTTGGATACTCGATTAGGTCACATCAAAGGTCTTGGTTGGGATCCAAAACCTAGCTCGTCTGTCAGTGTCTTGTCTTCTTCCCATCGTGAAAAAGAGCTTGAGAAGAAGGTTGAGACGATGCAATGTCAGATGGATGAGCTTAAGGAAACAAACGAGACGCTTAGAACATCCTTGAAGCAACAAACTGAGATGTGGGAAGAAAGATGGACTCAATTCCAACAATTCCTGGGTGAACGGCAGGGAGGAGGGTCTTCGAACCCTTAG

mRNA sequence

ATGGATGGATCAACTTGGAAATGGACGAGCTACAAAAAGCATCATCAGAAGAAGGGTCTGAGTCAATCTCGCAGTGAGGTTTGCAAACAAGTTTTGGATACTCGATTAGGTCACATCAAAGGTCTTGGTTGGGATCCAAAACCTAGCTCGTCTGTCAGTGTCTTGTCTTCTTCCCATCGTGAAAAAGAGCTTGAGAAGAAGGTTGAGACGATGCAATGTCAGATGGATGAGCTTAAGGAAACAAACGAGACGCTTAGAACATCCTTGAAGCAACAAACTGAGATGTGGGAAGAAAGATGGACTCAATTCCAACAATTCCTGGGTGAACGGCAGGGAGGAGGGTCTTCGAACCCTTAG

Coding sequence (CDS)

ATGGATGGATCAACTTGGAAATGGACGAGCTACAAAAAGCATCATCAGAAGAAGGGTCTGAGTCAATCTCGCAGTGAGGTTTGCAAACAAGTTTTGGATACTCGATTAGGTCACATCAAAGGTCTTGGTTGGGATCCAAAACCTAGCTCGTCTGTCAGTGTCTTGTCTTCTTCCCATCGTGAAAAAGAGCTTGAGAAGAAGGTTGAGACGATGCAATGTCAGATGGATGAGCTTAAGGAAACAAACGAGACGCTTAGAACATCCTTGAAGCAACAAACTGAGATGTGGGAAGAAAGATGGACTCAATTCCAACAATTCCTGGGTGAACGGCAGGGAGGAGGGTCTTCGAACCCTTAG

Protein sequence

MDGSTWKWTSYKKHHQKKGLSQSRSEVCKQVLDTRLGHIKGLGWDPKPSSSVSVLSSSHREKELEKKVETMQCQMDELKETNETLRTSLKQQTEMWEERWTQFQQFLGERQGGGSSNP

Homology

[Close]

BLAST of Lag0006663 vs. NCBI nr
Match: XP_038887413.1 (uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 16  QKKGLSQSRSEVCKQVLDTRLGHIKGLGWDPKPSSSVSVLSSSHREKELEKKVETMQCQM 75
           Q+     S  EVCKQVL  R G+IKGLG +PKPSSS SV S    +KELEKK+E M+ +M
Sbjct: 630 QEDPTPMSSVEVCKQVLGHRSGYIKGLGLNPKPSSSSSVTSYLQDKKELEKKMEKMEDEM 689

Query: 76  DELKETNETLR---TSLKQQTEMWEERWTQFQQFLGERQG-GGSSN 118
            ++K   E ++    +L  Q  MWE RW + Q  LG  QG  G SN
Sbjct: 690 IQMKANYEHMKETNVALTSQLSMWEGRWAEIQNMLGRGQGKDGHSN 735

[Close]

BLAST of Lag0006663 vs. NCBI nr
Match: XP_038887408.1 (poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 16  QKKGLSQSRSEVCKQVLDTRLGHIKGLGWDPKPSSSVSVLSSSHREKELEKKVETMQCQM 75
           Q+     S  EVCKQVL  R G+IKGLG +PKPSSS SV S    +KELEKK+E M+ +M
Sbjct: 818 QEDPTPMSSVEVCKQVLGHRSGYIKGLGLNPKPSSSSSVTSYLQDKKELEKKMEKMEDEM 877

Query: 76  DELKETNETLR---TSLKQQTEMWEERWTQFQQFLGERQG-GGSSN 118
            ++K   E ++    +L  Q  MWE RW + Q  LG  QG  G SN
Sbjct: 878 IQMKANYEHMKETNVALTSQLSMWEGRWAEIQNMLGRGQGKDGHSN 923

[Close]

BLAST of Lag0006663 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 16  QKKGLSQSRSEVCKQVLDTRLGHIKGLGWDPKPSSSVSVLSSSHREKELEKKVETMQCQM 75
           Q+     S  EVCKQVL  R G+IKGLG +PKPSSS SV S    +KELEKK+E M+ +M
Sbjct: 791 QEDPTPMSSVEVCKQVLGHRSGYIKGLGLNPKPSSSSSVTSYLQDKKELEKKMEKMEDEM 850

Query: 76  DELKETNETLR---TSLKQQTEMWEERWTQFQQFLGERQG-GGSSN 118
            ++K   E ++    +L  Q  MWE RW + Q  LG  QG  G SN
Sbjct: 851 IQMKANYEHMKETNVALTSQLSMWEGRWAEIQNMLGRGQGKDGHSN 896

[Close]

BLAST of Lag0006663 vs. NCBI nr
Match: XP_022156286.1 (uncharacterized protein LOC111023212 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 7.0e-11
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 23  SRSEVCKQVLDTRLGHIKGLGWDPKPS-----SSVSVLSSSHREKELEKKVETMQCQMDE 82
           ++ E C++VL  R  H+KGLG+ P+P+     SS +V SS+  EKELEKKVE M+ +M E
Sbjct: 173 TQPEACRKVLGDRPDHVKGLGYGPQPTLCKRGSSSNVTSSTLYEKELEKKVEDMEVEMRE 232

Query: 83  LKETNETLRTSLKQQTEMWEERWTQFQQFLGERQGGGSSN 118
           +K  N+     LK+    WE+RW +  +F+  RQG G SN
Sbjct: 233 MKTENQ----RLKESVSTWEDRWNEISRFMAGRQGDGPSN 268

The following BLAST results are available for this feature:

BLAST of Lag0006663 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887413.1	1.8e-11	48.11	uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida]	[more]
XP_038887408.1	1.8e-11	48.11	poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida]	[more]
XP_038887409.1	1.8e-11	48.11	poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida]	[more]
XP_022156286.1	7.0e-11	44.00	uncharacterized protein LOC111023212 [Momordica charantia]	[more]

BLAST of Lag0006663 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 61..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006663.1	Lag0006663.1	mRNA