Lag0006563 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006563
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionC2 domain-containing protein
Locationchr6: 43647495 .. 43648001 (-)
RNA-Seq ExpressionLag0006563
SyntenyLag0006563
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGCGACGGATTACAGAGTATTCGATCTAAACGTTACGTGCGCCGAAGGAATCGAAGGAGTTCTAAGTTTCATCGATTTTTTCCACAAATGGAAGGTCTACGCGGTGGTTTCCGTCGTCGGAGCCTCGCCGGACGGCCACCGAGAAACGCCGGTGGCTAAGTACTTCGGTCGAAATCCGGTGTGGAATTTTCCGATGAGGTTTTATTTGGAGGAATCGGAGCTGCGAGAAAATGCCCTAACAGCTCTGAGGATTCAGCTGAAACGAAAGCGAAGTTTTGGAGAAGATGAAGACATTGCCGAAGCTTTAGTTCCGTTGAAGAATCTTTTTCATGGCAATGAGAATGTGACAAATTGCACTTCATCGTTGTTGCTTTCGCCATCAGGCGGCCGTCGTGGTTTCGTGTATTTTTCGTATTATTTTAGCCGGATTCATCGTGCCACCGTCGGATTTTTGGTCGATAGGACATATCAATTATTGTTGAACTATGGTCACTTTTGA

mRNA sequence

ATGGCGATGGCGACGGATTACAGAGTATTCGATCTAAACGTTACGTGCGCCGAAGGAATCGAAGGAGTTCTAAGTTTCATCGATTTTTTCCACAAATGGAAGGTCTACGCGGTGGTTTCCGTCGTCGGAGCCTCGCCGGACGGCCACCGAGAAACGCCGGTGGCTAAGTACTTCGGTCGAAATCCGGTGTGGAATTTTCCGATGAGGTTTTATTTGGAGGAATCGGAGCTGCGAGAAAATGCCCTAACAGCTCTGAGGATTCAGCTGAAACGAAAGCGAAGTTTTGGAGAAGATGAAGACATTGCCGAAGCTTTAGTTCCGTTGAAGAATCTTTTTCATGGCAATGAGAATGTGACAAATTGCACTTCATCGTTGTTGCTTTCGCCATCAGGCGGCCGTCGTGGTTTCGTGTATTTTTCGTATTATTTTAGCCGGATTCATCGTGCCACCGTCGGATTTTTGGTCGATAGGACATATCAATTATTGTTGAACTATGGTCACTTTTGA

Coding sequence (CDS)

ATGGCGATGGCGACGGATTACAGAGTATTCGATCTAAACGTTACGTGCGCCGAAGGAATCGAAGGAGTTCTAAGTTTCATCGATTTTTTCCACAAATGGAAGGTCTACGCGGTGGTTTCCGTCGTCGGAGCCTCGCCGGACGGCCACCGAGAAACGCCGGTGGCTAAGTACTTCGGTCGAAATCCGGTGTGGAATTTTCCGATGAGGTTTTATTTGGAGGAATCGGAGCTGCGAGAAAATGCCCTAACAGCTCTGAGGATTCAGCTGAAACGAAAGCGAAGTTTTGGAGAAGATGAAGACATTGCCGAAGCTTTAGTTCCGTTGAAGAATCTTTTTCATGGCAATGAGAATGTGACAAATTGCACTTCATCGTTGTTGCTTTCGCCATCAGGCGGCCGTCGTGGTTTCGTGTATTTTTCGTATTATTTTAGCCGGATTCATCGTGCCACCGTCGGATTTTTGGTCGATAGGACATATCAATTATTGTTGAACTATGGTCACTTTTGA

Protein sequence

MAMATDYRVFDLNVTCAEGIEGVLSFIDFFHKWKVYAVVSVVGASPDGHRETPVAKYFGRNPVWNFPMRFYLEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNLFHGNENVTNCTSSLLLSPSGGRRGFVYFSYYFSRIHRATVGFLVDRTYQLLLNYGHF
Homology
BLAST of Lag0006563 vs. NCBI nr
Match: XP_022938307.1 (protein SRC2 [Cucurbita moschata] >KAG7021095.1 Protein SRC2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.0 bits (528), Expect = 6.4e-50
Identity = 107/147 (72.79%), Postives = 122/147 (82.99%), Query Frame = 0

Query: 6   DYRVFDLNVTCAEGIEGVLSFIDFFHKWKVYAVVSVVGASPDGHRETPVAKYFGRNPVWN 65
           DYR F +NVTC EGIEGVLSF++FFHK KVYA VS+ G     ++ETP+AKYFG NPVWN
Sbjct: 2   DYRAFKVNVTCVEGIEGVLSFVNFFHKSKVYAAVSITG-DLLANQETPLAKYFGENPVWN 61

Query: 66  FPMRFYLEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNLFHGNENV--TNCTS 125
           +PM+FYL+ES+L+ENALT LRIQL+RKR FG DE IAEALVPLKNLF GN+NV   N  S
Sbjct: 62  WPMKFYLKESKLQENALT-LRIQLRRKRIFGGDEYIAEALVPLKNLFDGNKNVMDENYCS 121

Query: 126 SLLLSPSGGRRGFVYFSYYFSRIHRAT 151
           S LLSPSGGRRGFVYFSYYFSR + AT
Sbjct: 122 SWLLSPSGGRRGFVYFSYYFSRTYAAT 146

BLAST of Lag0006563 vs. NCBI nr
Match: KAG6586252.1 (Protein SRC2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.0 bits (528), Expect = 6.4e-50
Identity = 107/147 (72.79%), Postives = 122/147 (82.99%), Query Frame = 0

Query: 6   DYRVFDLNVTCAEGIEGVLSFIDFFHKWKVYAVVSVVGASPDGHRETPVAKYFGRNPVWN 65
           DYR F +NVTC EGIEGVLSF++FFHK KVYA VS+ G     ++ETP+AKYFG NPVWN
Sbjct: 2   DYRAFKVNVTCVEGIEGVLSFVNFFHKSKVYAAVSITG-DLLANQETPLAKYFGENPVWN 61

Query: 66  FPMRFYLEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNLFHGNENV--TNCTS 125
           +PM+FYL+ES+L+ENALT LRIQL+RKR FG DE IAEALVPLKNLF GN+NV   N  S
Sbjct: 62  WPMKFYLKESKLQENALT-LRIQLRRKRIFGGDEYIAEALVPLKNLFDGNKNVMDENYCS 121

Query: 126 SLLLSPSGGRRGFVYFSYYFSRIHRAT 151
           S LLSPSGGRRGFVYFSYYFSR + AT
Sbjct: 122 SWLLSPSGGRRGFVYFSYYFSRTYAAT 146

BLAST of Lag0006563 vs. NCBI nr
Match: XP_031736682.1 (protein SRC2 homolog [Cucumis sativus] >KGN60949.1 hypothetical protein Csa_021167 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 2.5e-46
Identity = 102/151 (67.55%), Postives = 124/151 (82.12%), Query Frame = 0

Query: 3   MATDYRVFDLNVTCAEGIEGVLSFIDFFHKWKVYAVVSVVGASPDGHRETPVAKYFGRNP 62
           M  DYRV DLN+T AEGI+GVLSF +FF K KVYA VSV G +P   +ETP+AKYFG+NP
Sbjct: 1   MLIDYRVLDLNITSAEGIKGVLSFTNFFFKSKVYAAVSVDG-TPSATQETPLAKYFGKNP 60

Query: 63  VWNFPMRFYLEESELRENALTALRIQLKRKRSFG-EDEDIAEALVPLKNLFHGNENVT-- 122
           VWN  MRF+LEES+L+ENALT L+I+LKR+R+FG +DEDIAEA +PL+NLF+GNENVT  
Sbjct: 61  VWNCSMRFHLEESKLQENALT-LKIKLKRRRTFGRDDEDIAEASIPLRNLFNGNENVTNE 120

Query: 123 NCTSSLLLSPSGGRRGFVYFSYYFSRIHRAT 151
           NC+SS +LS SGG RG VYFSY FSR + A+
Sbjct: 121 NCSSSFMLSKSGGLRGLVYFSYCFSRTYNAS 149

BLAST of Lag0006563 vs. NCBI nr
Match: XP_022150754.1 (protein SRC2 [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 5.4e-41
Identity = 95/153 (62.09%), Postives = 115/153 (75.16%), Query Frame = 0

Query: 3   MATDYRVFDLNVTCAEGIEGVLSFIDFFHKWKVYAVVSVVGASPDGHRETPVAKYFGRNP 62
           M+TD+R F++N+TCAEG +GVLSF++FF K KVYA VSVVG  P   + TP+A YFG NP
Sbjct: 1   MSTDFREFNINITCAEGQKGVLSFVNFFQKTKVYAAVSVVGGEP-AVQFTPLANYFGDNP 60

Query: 63  VWNFPMRFYLEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNLFHGNENVTN-- 122
           VWNFPMRF LEESEL+++ALT LRI+L+RKR FG DE IAEA V L NL + N++  N  
Sbjct: 61  VWNFPMRFCLEESELQQDALT-LRIELRRKRIFGGDEAIAEAFVRLGNLLNCNDSNLNFM 120

Query: 123 ---CTSSLLLSPSGGRRGFVYFSYYFSRIHRAT 151
              C  S LLSP+GGRRG +YFSY F R  RAT
Sbjct: 121 DQICGFSWLLSPAGGRRGILYFSYCFGRTIRAT 151

BLAST of Lag0006563 vs. NCBI nr
Match: KAA0048022.1 (protein SRC2-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-20
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 35  VYAVVSVVGASPDGHRETPVAKYFGRNPVWNFPMRFYLEESELRENALTALRIQLKRKRS 94
           VYA V V G  P   +ETP+ K+FG NPVWNFPMRFYLEES+L+ENALT L+I+LKRKR+
Sbjct: 277 VYAAVYVDGI-PSATQETPLEKHFGENPVWNFPMRFYLEESKLQENALT-LKIKLKRKRT 336

Query: 95  F-GEDEDIAEALVPLKNLFHGNENVTN 121
           F G  EDI EA + L+NLF+GN+NVTN
Sbjct: 337 FRGYGEDIGEASILLRNLFNGNQNVTN 361

BLAST of Lag0006563 vs. ExPASy Swiss-Prot
Match: O04133 (Protein SRC2 OS=Glycine max OX=3847 GN=SRC2 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-11
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 0

Query: 3   MATDYRVFDLNVTCAEGIEGVLSFIDFFHKWKVYAVVSVVG--ASPDGHRETPVAKYFGR 62
           M  +YR  +LN+  A+ I+ V    + F K  VYA VS+ G    P G   T V K  G 
Sbjct: 1   MTMEYRTLELNIISAKDIKNV----NLFSKMDVYAAVSLSGDPLHPQG-ATTHVHKDAGS 60

Query: 63  NPVWNFPMRFYLEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNLFH--GNENV 122
           NP WN+P++F + ES  +EN L +L I+L   R+ G D  I    VPL+ L    G+++ 
Sbjct: 61  NPTWNYPVKFSVNESLAKENRL-SLEIKLISDRTLG-DTVIGTVHVPLRELLDNPGDDSS 120

Query: 123 TNCTSSLLLSPSGGRRGFVYFSYYF 144
               S  ++  S   +G + FSY F
Sbjct: 121 FRQVSYQVMKQSRKSKGSLNFSYKF 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022938307.16.4e-5072.79protein SRC2 [Cucurbita moschata] >KAG7021095.1 Protein SRC2, partial [Cucurbita... [more]
KAG6586252.16.4e-5072.79Protein SRC2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_031736682.12.5e-4667.55protein SRC2 homolog [Cucumis sativus] >KGN60949.1 hypothetical protein Csa_0211... [more]
XP_022150754.15.4e-4162.09protein SRC2 [Momordica charantia][more]
KAA0048022.11.4e-2066.67protein SRC2-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
O041332.7e-1135.86Protein SRC2 OS=Glycine max OX=3847 GN=SRC2 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainPFAMPF00168C2coord: 10..116
e-value: 3.4E-5
score: 24.1
IPR000008C2 domainPROSITEPS50004C2coord: 1..122
score: 11.131863
IPR035892C2 domain superfamilyGENE3D2.60.40.150C2 domaincoord: 9..138
e-value: 1.9E-9
score: 39.4
IPR035892C2 domain superfamilySUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 25..143
NoneNo IPR availablePANTHERPTHR32246INGRESSION PROTEIN FIC1coord: 8..147
NoneNo IPR availablePANTHERPTHR32246:SF101OS01G0934100 PROTEINcoord: 8..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006563.1Lag0006563.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response