Lag0006531 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006531
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr6: 43340260 .. 43340840 (+)
RNA-Seq Expression	Lag0006531
Synteny	Lag0006531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCACTTGTCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGATCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGTGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGTGGAATTCAGGATGGTCACTTGCCCTTCAGATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTAAGGATGGTCTCTCGCCTTTCACATCTTGCCTCAGGCAGTGGTGTCAACCCCTGATTCAGGCGGACTGCAGGTTGGTCACTTGCCCACTTGCACTGCCAACCTTTGAAGATGAAGCGAGGTCATCAATCGCCGACTTTGGAGATGAAGCGATGCCGTCAACCGCCAACTTTGAGGATCAAGCGAGGCCGAAGCCGTCAACCGTCAACCTTGAAGATGAAGCAAAGTTAGAGCAACAACTCTTAGAGACAAAATAA

mRNA sequence

ATGGTCACTTGTCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGATCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGTGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGTGGAATTCAGGATGGTCACTTGCCCTTCAGATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTAAGGATGGCGGACTGCAGGTTGGTCACTTGCCCACTTGCACTGCCAACCTTTGAAGATGAAGCGAGGTCATCAATCGCCGACTTTGGAGATGAAGCGATGCCGTCAACCGCCAACTTTGAGGATCAAGCGAGGCCGAAGCCGTCAACCGTCAACCTTGAAGATGAAGCAAAGTTAGAGCAACAACTCTTAGAGACAAAATAA

Coding sequence (CDS)

ATGGTCACTTGTCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGATCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGTGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGTGGAATTCAGGATGGTCACTTGCCCTTCAGATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTAAGGATGGCGGACTGCAGGTTGGTCACTTGCCCACTTGCACTGCCAACCTTTGAAGATGAAGCGAGGTCATCAATCGCCGACTTTGGAGATGAAGCGATGCCGTCAACCGCCAACTTTGAGGATCAAGCGAGGCCGAAGCCGTCAACCGTCAACCTTGAAGATGAAGCAAAGTTAGAGCAACAACTCTTAGAGACAAAATAA

Protein sequence

MVTCPSHLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQAEFRMVTCPSHLASGSDQPLIQVEFRMVTCPSHLASGSDQPLIQVEFRMVTCPSDLASGSDQPLIQAELRMADCRLVTCPLALPTFEDEARSSIADFGDEAMPSTANFEDQARPKPSTVNLEDEAKLEQQLLETK

Homology

[Close]

BLAST of Lag0006531 vs. NCBI nr
Match: CAE1322405.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 71.6 bits (174), Expect = 7.4e-09
Identity = 42/107 (39.25%), Postives = 45/107 (42.06%), Query Frame = 0


Query: 2   VTC---PSHLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQAEFRMVTCPSHLASGSDQ 61
           +TC   PSHL S SD P I         P+HL S SD P I         PSHL S S  
Sbjct: 107 LTCYPLPSHLPSSSDSPAILFRLTCYPLPTHLLSSSDSPAIFFRLTCYPLPSHLLSSSVS 166

Query: 62  PLIQVEFRMVTCPSHLASGSDQPLIQVEFRMVTCPSDLASGSDQPLI 106
           P I         PSHL S SD P I         P+ L S S  P I
Sbjct: 167 PAILFRLTCYLLPSHLLSYSDSPAILFRLTCHRLPTHLLSSSVSPAI 213

[Close]

BLAST of Lag0006531 vs. NCBI nr
Match: CAE1178059.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-05
Identity = 38/107 (35.51%), Postives = 39/107 (36.45%), Query Frame = 0


Query: 2   VTC---PSHLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQAEFRMVTCPSHLASGSDQ 61
           +TC   P HL S S  P I         P HL S SD P I         P HL S    
Sbjct: 95  LTCYSVPPHLLSSSASPAILFFLTCYPLPFHLLSSSDSPAILFLLTCYPLPPHLLSSFAS 154

Query: 62  PLIQVEFRMVTCPSHLASGSDQPLIQVEFRMVTCPSDLASGSDQPLI 106
           P I         PSHL S SD P I         PS L   S  P I
Sbjct: 155 PAILFRLTCYPLPSHLLSFSDSPAILFRLTCYPLPSHLLFSSASPAI 201

[Close]

BLAST of Lag0006531 vs. NCBI nr
Match: CAE1298543.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 34/101 (33.66%), Postives = 37/101 (36.63%), Query Frame = 0


Query: 5   PSHLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQAEFRMVTCPSHLASGSDQPLIQVE 64
           P HL S S  P I   F     P  L S S  P I         P+HL S S  P+I   
Sbjct: 444 PPHLLSSSTSPAILFRFTCYPLPPQLLSSSASPAILFRLTCYPLPTHLLSSSASPVILFH 503

Query: 65  FRMVTCPSHLASGSDQPLIQVEFRMVTCPSDLASGSDQPLI 106
           F     P HL S S    I       + P  L S S  P I
Sbjct: 504 FTCHPLPPHLLSSSTSYAILFHLTCNSLPPHLLSSSTSPAI 544

[Close]

BLAST of Lag0006531 vs. NCBI nr
Match: KAG7335348.1 (hypothetical protein KOW79_001944 [Hemibagrus wyckioides])

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-04
Identity = 25/100 (25.00%), Postives = 45/100 (45.00%), Query Frame = 0


Query: 1   MVTCPSHLASGSDQPLIQAEFRMITCPSHLASGSDQPLIQAEFRMVTCPSHLASGSDQPL 60
           ++TC  HL + S   L+ +   +ITC  HL + S   +  +   ++T    L + S   +
Sbjct: 215 LITCSHHLITSSPHHLLSSPHHLITCSHHLITSSPALITSSPHHLITSSPALITSSPALI 274

Query: 61  IQVEFRMVTCPSHLASGSDQPLIQVEFRMVTCPSDLASGS 101
                 ++TC  HL + S   L+     ++TC   L + S
Sbjct: 275 TSSPHHLITCSHHLITSSLDHLLSSPHHLITCSHHLITCS 314

The following BLAST results are available for this feature:

BLAST of Lag0006531 vs. NCBI nr


Match Name	E-value	Identity	Description
CAE1322405.1	7.4e-09	39.25	unnamed protein product [Sepia pharaonis]	[more]
CAE1178059.1	2.9e-05	35.51	unnamed protein product [Sepia pharaonis]	[more]
CAE1298543.1	1.5e-04	33.66	unnamed protein product [Sepia pharaonis]	[more]
KAG7335348.1	2.5e-04	25.00	hypothetical protein KOW79_001944 [Hemibagrus wyckioides]	[more]

BLAST of Lag0006531 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006531.1	Lag0006531.1	mRNA