Lag0006493 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006493
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr6: 43007845 .. 43013369 (+)
RNA-Seq Expression	Lag0006493
Synteny	Lag0006493

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCCCCACCCACCCCTTCTTTCTTTTTTTTTTCCTTCTTCTTCTTCTCCTCGCTCACCGCCGCCGCCGCCATCTTCCACCACCACGGTTGCCGCGCGTTCCATTTCTCATCTCTCCCATTCACTCCTTCTCTCCGAAACCCTCTTTCTTTCCTCCATCTTTTTTCTTCTTCTTCTCCTCGCCGATCGCAGCCGCCGTCACGAGTATTGGGTCTGAAATAAGAAGAAGAAAAAACGTGGAGTTGGGGAGGAGGCTCCGACGGCGACGCCGACGGCGAAGAGGAAGATTGGACGGCGGTGAGGGATTCGAGGGGCTGGTTTGTATCTTCGCCGGATCAATGTGCTTGCCGAATTCGCAGTCGGAGATGGGAAAGAGGTGGGCGGCGATGCATGTGAGAGGAAGAAGAGAATGTGAGGGAAAAAAATGTTCAGCCAAAGGAGGGAAGAAGATGATGCTTCGATATGCGTGGAGGGAGAGAAGAGAGGCTTTTTTTAAAAAATTATTATTTTAATCATTTTAATTTTTTAATTATTATTTTATTATATTAATATATTATTATTTTAATTTTAAAAGTTATTATTTTATTATTAAACGTTTGCCACGTCAGTACTGTTAGAAAAATTAACGGTGGAGGGACTAAATTGAACTATTTTCTAAACAGTGAGGACTTGATTGTTCAATTTTGAAACCTAGGGACCTATTGGAAACGAACCCCAAACATGAGGGACCAAAAGGGTATTTTACCCTAAAATAAATAAATAAATTGAAGACAAAATTACATTAGAAGACAAAATAAGAATTATTATCCTAGCATTCAAATCCTTTTTGGTTTTAAAGTTTTTCCCTCCAATTATTTAAATTGGAAACCACGTAGCCAAACACCACCCCAAAATCTGGGAATTCCCAACCTGTCAACATCCCTCCTCTGCCTACACTTTTTGAACCCTTCATCACAACCGTACATCAAACCGCATATCTTTTTTCTCATCGGATGATTATAGATGTACGGTTGCGATTTCTCGTCTAGTTTAGATTTTGTGGAAAACTACCGCATTGGATTGTAGCTCATGTGGGCCCGTTTTTGTGCATTAGGCAATCACAGCCACCAGCGTTTCCATACTTTCGGGTCAAGTCCGCAGCCCCACGCCCTCATTCAGCGCGTGTTAACCAAGCGCGGTGAATGGACGTGGATTTGTTTAAAAAATGCCTCTGAATTTAAAAAGTTTCCAAAATACCTTAACTTTACAAAACGATTCAAAAATATCCTTGTAGTTAATTTTTTGATGGAAACCGTTAAAAATGTTTTGAAAATACCATTAACAAAAATCTAGTCAAACTTTTGGGATGACGTGTTGAAAGAGAAAAAAAGCTCCTAGTGTATGATTACATGAAAAATAGGTAAAGCTTCTCATTAATTTTGATGGAAGAAGAATTTGTAGTGAGAGAAGGAAAAAAATACATTTTCTAATAAGTTTACTTTTTAAAATATTTTGAAAGTTAAAGAGTACTAATGAAACTGAAAATTTTAATGGTTTTCATAAAAAATTAACGACAATGGTATTTTTGAAACATTTTTTAAAGTCCAAGGGTATTTTTAAAACTTTTTAAAGTTCAGTGGCATTTTTTTAAACAAACTCCATAGTTCATGGGCATTTTTTTATAATTTAGCCTTTATTATTTTGTCTCGTAATGGTTACATTACGGAACTTTCGATTTTGTGTCCATTTAATTTAAGAAATTTAAAAAGTGTCTAACAGATTTTTAAATCTTTTATCTTGTGTCAAATAAGTTTTTTAAATTTTGAATTTTATGTTTAATAGATTTTTGAAATTTCAATTTTGAGTTTAATAGGTCATTGACCCATTCAACATTATTATTTGTTTTATTTCACATGCCTATTAAATACAAAATTAAAGTTTAAGGTCATATCAAACATACAATTCAATATTATAACTAATAGATTGGTTAAAAGTTACAAACATATCATAAACATATTAGATGCAAAATTCAAAGTTCAGATGTCTATTACACATCCTACAAGTCCACAGACTAAATAGATACAAAATTAAAAGTTTAGAAATTCATTAAACACATTTCAAAGTTCATCAATACAATAGACACAAAAGTTTTTTTTTTTTTTTTTGAAACTAAATAGACACAACGTTGAAAACTCATGAACTGAATTTATAAATTAACCAATTGATGTTTACATCACATTTCGTAGTTCATATATGATTTGTGAAATCCAATAAACTTACATGGACTAAATTAAATTTAAACTCAAGTTACAAATATAAATAAAAACGATAAGGATTTGAACCTCGTTTGATATAATTTAACATATTTAACACACACATATATATGTATATATATATATATATATATATTTCTATATTGGTATGTTTTCTCATAAAATATTAAATTGATTTTCTTTTTAAGAAATTAAATTGATATCAAACTCTGATCCAAAGGTTAAAATGTCATGGATATTCCAAGAAAAATATTCAAAACAAAAAAAATAAAAAAATATTTAAATGAACAAATAAATGTTTTACACTTTTAAAATAAGTTAAAATACTTATAATAAATATTATATTCACATTAGTTACATTTTGTTATTATTTTGTTTACATTTTATCAATTTTTTTACGATAATTCGATTTACCTTGTATGTTGATGTCGAACTCATAAAAATGTGAAAATGTCGATGGAAATATAATATATTGCCCTGATCACACCGTTCCATAAAATTGAAATGGACGGTTTCTGAAACGTGGGCGACAAGTCAGAGAGGGAGCACCAATTTTCCTCTACACACGGCCACACCGAATCACTACCACTCCATCCTTAGTTTTATAACCCCCACAGACTCTCCAGTCTCTCCAATCTCGCCAGAGTTTCAGGAACGCGAAGGAGCAGAGCAGCAATGGCGGGAAGGTCATCGAGATCGGCATTCCGGTGGCCGGAATTCGAATTTTCCCTCAGATCCTCCATCTTCCGGTGGCCCAGCGTCCTCTCCTCGCTCTTCTCATGGAACTGGAGCTCCGCCTGGTTCCGCCGCTGGCCTCGCGGCCTCCTCAACGCTCCGATCGTCGACGAACTCGTCTGGTCCGTCATGTCCGCCTTCGAATCCGTCGCCTTAGTCTCCATGATCGGCTTCTTCTTCGTCTTCTACGGCTGCAACTTGTAAACTCCGCGCACTCCTCGTCCAGCCGGCGAACGATTCCACATTCCAACACCTGTCGCTTCCTCAGCGGCGACGTAGACGGCAGTAGAAAGAGATTTGACTGGTAAGATTAAGAACGAATCATCCTAGCACTGAGTCTGAGATTCCTTTTCTTTACTTAATTGATTGATTTTCTTTTCGATTTCTGCACTCTCTTGTTGATGAAGATTTTTGTTGAATTTGTGAGTGGGACCGTAATTAGTACGAACCCTAAGTCGCTTAATCTCGTTTCAAATCAGTAGCCATTTGATTAGGGCATTTTGTAGAATTTTGTTGTTGTTTGTAATGTGTATAGGAATTAATTTAAAATTTGAAATTCAAATGTTTCGTTTTCTGGATTTATATTATATAGTGCAATATTAAATTCAAATTCAAATTCAATGAGAATGTGAAAGACATGGTATGTAATTTTATATGATCCAATTTCGGAGGGAAATGGCCGAAAACGCAGCTATCAGAATTCAGAGCTAAACGCGTATAATTGAATGATGCACGTTAAAACTTAGTGACGAAGGATTTTATTTATTTATCAATTCATTATTCGTTTTTTTTTTAGAAAATTCATTATTAGCTAAAAATAATAATAGGACAAGGAATATTAATAAAAACTAAAATTTTAAAGATAAATTAACAATACAATTTTAAGCTTTATATGTTATAAAAAATGCCTCTAAACTATGGGGTTTGTTTAAAAAATGCCCTAAACTTTAAAAAAATTTCAAAAATTTAAAAAATACTTAATTCTTTGATGGAAACCATTAAAAATTTCAATTTCATTAATACTCTTTAACTTTTAAAAGATTTTTAAAAATATCCTTATTAGAAAATGTTTTTTTTTTTTTTTTTCTGTAAATTTTTCTTCCATGAAAATTAATGATAAGTTTTATCTATTTTTAATGTATCCATACACCAGGAGCTTTTCTTCTCTTTCAACCCATCATCTCAAGAGTTTCACTAGACTCTCGGCAATGGTATTTTCGAAACATTTTTAATAGTTTTAATAGTTTCTATCCAAAATTAACTACAAGGTATTTTTGAAATGTTTGGTAAAGTTCATGGGTATTTTTGAAACTTTTTAAAGTTTAGGGCATTTTTTAAACAAACCCCATAGTTTATGGGTATTTTGTATAATTTAGCCTACATTAAAATTGGACATTTGAAAGCATATAAAATGAAATGAAACAACTAAGGGTGTGTTTGGGGCAAGGGTTTGGGTTTTGGAAGTGGGGGTTTAGGAAATAGGGTGGTTTTGGAAATCTGTGGGTTTTGGAAGTCTGTGTTTGGGGTGCTGATTTCAGAAGTCTGAGTTGGGAAGTCTGTGTTTGGGGTGCTGATTTCTGAAGTCTGAGTTTGGGAAGTCTGTGTTTGGGGTGCTGATTTCAGAAGTCTGAGTTGGGAAGTCTGTGTTTGGGGTGCTGATTTCAGAAGTTTGAGTTTCTGTTTTTTTTTTTTTTGTTCCTTTTTTTATTGATTTAATTTTTTTTAATTCATGTTACACAATTCTTATACAATTAAAAATTTATAACTTTCTTTCCATTAATTGTAAATATGGGACTATAAGACCCAAGTTTCATCACGAAATTGATTATTAAAGAAGAAAATTATAATCAATTTCCCTGCTTCCATTTTTTTTTCACAGTTGTTGCATTTTCTATATTTGTTAACTCTGTGTTTTGGAGGTTCAGACCTTGTTTTTAAGAGCAAGCATTTTTCTATTGTTTCTTATTTTTCCTTCATATTAAACAATTGTTATAAAATTATCAATTTAAAATGTTCTTTCCATTAATTGTGAATATGGGAATTTAATACACAATCCTGATCGAACATATAAAATTGAAAAAAAAAATTATCCTTTATTAAATTTCGTTGCACACATTTTGCATTTCCTACATTTCAGTCTGAACCTAATTTCAGACTCTGTTTTTTTTTTTTCATTGGTATTTTTTCTTTTTTCTTTTTTTTTTTCTGTTTCTAATTTTCAATGTTATACAATTGTTATAAGATTGAGTAATGAACATGATCATTCTATTAAGTGGGAAATTGGGATAGTAAATTGGGATAGTAAGTCGATTGCTTTCATATATATCAGAAACTAGATGATCAACCCTGTACAAAAAATTCAGAACAGGTTGACTATATTACAGTTCACAAAAAATTATTAAAATATGTCATAGGTACGTAGTTCGTCATTAGAAATCAAAAGTTCCGTCGGAGGAAAGTCTGTTCAGAAGTCACCGGCGTTCATTGAGCAATCCGCGGAGGAAACGAAGCCTCAGGGTCGGTGGCACAGATAG

mRNA sequence

ATGGCCACCCCCACCCACCCCTTCTTTCTTTTTTTTTTCCTTCTTCTTCTTCTCCTCGCTCACCGCCGCCGCCGCCATCTTCCACCACCACGGTTGCCGCGCGTTCCATTTCTCATCTCTCCCATTCACTCCTTCTCTCCGAAACCCTCTTTCTTTCCTCCATCTTTTTTCTTCTTCTTCTCCTCGCCGATCGCAGCCGCCGTCACGAGTATTGGGTCTGAAATAAGAAGAAGAAAAAACGTGGAGTTGGGGAGGAGGCTCCGACGGCGACGCCGACGGCGAAGAGGAAGATTGGACGGCGGTGAGGGATTCGAGGGGCTGGTTTGTATCTTCGCCGGATCAATGTGCTTGCCGAATTCGCAGTCGGAGATGGGAAAGAGGTGGGCGGCGATGCATACTCTCCAGTCTCTCCAATCTCGCCAGAGTTTCAGGAACGCGAAGGAGCAGAGCAGCAATGGCGGGAAGGTCATCGAGATCGGCATTCCGGTGGCCGGAATTCGAATTTTCCCTCAGATCCTCCATCTTCCGGTGGCCCAGCGTCCTCTCCTCGCTCTTCTCATGGAACTGGAGCTCCGCCTGGTTCCGCCGCTGGCCTCGCGGCCTCCTCAACGCTCCGATCGTCGACGAACTCGTCTGGTCCGTCATGTCCGCCTTCGAATCCGTCGCCTTAGTCTCCATGATCGGCTTCTTCTTCGTCTTCTACGGCTGCAACTTGTAAACTCCGCGCACTCCTCGTCCAGCCGGCGAACGATTCCACATTCCAACACCTGTCGCTTCCTCAGCGGCGACGTAGACGGCAGTAGAAAGAGATTTGACTGGAGCTTTTCTTCTCTTTCAACCCATCATCTCAAGAGTTTCACTAGACTCTCGGCAATGGTACGTAGTTCGTCATTAGAAATCAAAAGTTCCGTCGGAGGAAAGTCTGTTCAGAAGTCACCGGCGTTCATTGAGCAATCCGCGGAGGAAACGAAGCCTCAGGGTCGGTGGCACAGATAG

Coding sequence (CDS)

ATGGCCACCCCCACCCACCCCTTCTTTCTTTTTTTTTTCCTTCTTCTTCTTCTCCTCGCTCACCGCCGCCGCCGCCATCTTCCACCACCACGGTTGCCGCGCGTTCCATTTCTCATCTCTCCCATTCACTCCTTCTCTCCGAAACCCTCTTTCTTTCCTCCATCTTTTTTCTTCTTCTTCTCCTCGCCGATCGCAGCCGCCGTCACGAGTATTGGGTCTGAAATAAGAAGAAGAAAAAACGTGGAGTTGGGGAGGAGGCTCCGACGGCGACGCCGACGGCGAAGAGGAAGATTGGACGGCGGTGAGGGATTCGAGGGGCTGGTTTGTATCTTCGCCGGATCAATGTGCTTGCCGAATTCGCAGTCGGAGATGGGAAAGAGGTGGGCGGCGATGCATACTCTCCAGTCTCTCCAATCTCGCCAGAGTTTCAGGAACGCGAAGGAGCAGAGCAGCAATGGCGGGAAGGTCATCGAGATCGGCATTCCGGTGGCCGGAATTCGAATTTTCCCTCAGATCCTCCATCTTCCGGTGGCCCAGCGTCCTCTCCTCGCTCTTCTCATGGAACTGGAGCTCCGCCTGGTTCCGCCGCTGGCCTCGCGGCCTCCTCAACGCTCCGATCGTCGACGAACTCGTCTGGTCCGTCATGTCCGCCTTCGAATCCGTCGCCTTAGTCTCCATGATCGGCTTCTTCTTCGTCTTCTACGGCTGCAACTTGTAAACTCCGCGCACTCCTCGTCCAGCCGGCGAACGATTCCACATTCCAACACCTGTCGCTTCCTCAGCGGCGACGTAGACGGCAGTAGAAAGAGATTTGACTGGAGCTTTTCTTCTCTTTCAACCCATCATCTCAAGAGTTTCACTAGACTCTCGGCAATGGTACGTAGTTCGTCATTAGAAATCAAAAGTTCCGTCGGAGGAAAGTCTGTTCAGAAGTCACCGGCGTTCATTGAGCAATCCGCGGAGGAAACGAAGCCTCAGGGTCGGTGGCACAGATAG

Protein sequence

MATPTHPFFLFFFLLLLLLAHRRRRHLPPPRLPRVPFLISPIHSFSPKPSFFPPSFFFFFSSPIAAAVTSIGSEIRRRKNVELGRRLRRRRRRRRGRLDGGEGFEGLVCIFAGSMCLPNSQSEMGKRWAAMHTLQSLQSRQSFRNAKEQSSNGGKVIEIGIPVAGIRIFPQILHLPVAQRPLLALLMELELRLVPPLASRPPQRSDRRRTRLVRHVRLRIRRLSLHDRLLLRLLRLQLVNSAHSSSSRRTIPHSNTCRFLSGDVDGSRKRFDWSFSSLSTHHLKSFTRLSAMVRSSSLEIKSSVGGKSVQKSPAFIEQSAEETKPQGRWHR

Homology

[Close]

BLAST of Lag0006493 vs. NCBI nr
Match: KAG6599176.1 (hypothetical protein SDJN03_08954, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 5.7e-18
Identity = 64/99 (64.65%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 145 NAKEQSSNGGKVIEIGIPVAGIRIFPQILHLPVAQRPLLALLMELELRLVPPLASRPPQR 204
           + + +S NGGKV +I I              PV +RP LALLMELE RLVPPLASRP Q 
Sbjct: 10  SGRRRSGNGGKVTKIAI--------------PVERRPRLALLMELEFRLVPPLASRPSQP 69

Query: 205 SDRRRTRLVRHVRLRIRRLSLHDRLLLRLLRLQLVNSAH 244
           SDRRR RLVRH RLRIRRLSLHDRLLLRLLRLQL+   H
Sbjct: 70  SDRRRPRLVRHDRLRIRRLSLHDRLLLRLLRLQLIIRTH 94

The following BLAST results are available for this feature:

BLAST of Lag0006493 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599176.1	5.7e-18	64.65	hypothetical protein SDJN03_08954, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0006493 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0006493 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0006493 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..331

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006493.1	Lag0006493.1	mRNA