Lag0006487 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006487
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein of unknown function, DUF538
Locationchr6: 42953096 .. 42953611 (-)
RNA-Seq ExpressionLag0006487
SyntenyLag0006487
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCTTGTCACAGAAGAGATCAAAGCCAAAGCTGATGAGGTCTACTATGGAGATGAGATATGCCAAGAGAAATCAAGGGAGTTGCTCAAAGAAGTGGGGTTTCCAAATGGGGTGTTGCCAATGAAAGACATGGAGGAATGTGGGATTGTGAGAGAGACAGGGTTTGTTTGGCTGAAGCAGAAAAAGAGCTACACTCATAAGTTTGAGGAGATTGGGAGGCTCGTCAGTTATGCCAAAGAAGTTACTGCCTATGTGGAGAAAAACAGGGTTAAGAAGCTCACTGGAGTCAAGGCCAAGGAGCTTTTGATTTGGCTCTCACTCTGTGAGATCTATGTTGATGACCCACCAACTGGAAAAATCTCGTTCAAGTCTTCGGCCGGGCTGTCGAGAACTTTTCCTGTGTCGGCTTTCGAGGTTAAAGAACTTCAGAAGGTGGAAGAGAAGAAGAACAGCAAAGATGTGGAAGAAGTTGTGAATGTAGCACCTACAACTATACAAGTGAAGCAGGTCTGA

mRNA sequence

ATGTCCCTTGTCACAGAAGAGATCAAAGCCAAAGCTGATGAGGTCTACTATGGAGATGAGATATGCCAAGAGAAATCAAGGGAGTTGCTCAAAGAAGTGGGGTTTCCAAATGGGGTGTTGCCAATGAAAGACATGGAGGAATGTGGGATTGTGAGAGAGACAGGGTTTGTTTGGCTGAAGCAGAAAAAGAGCTACACTCATAAGTTTGAGGAGATTGGGAGGCTCGTCAGTTATGCCAAAGAAGTTACTGCCTATGTGGAGAAAAACAGGGTTAAGAAGCTCACTGGAGTCAAGGCCAAGGAGCTTTTGATTTGGCTCTCACTCTGTGAGATCTATGTTGATGACCCACCAACTGGAAAAATCTCGTTCAAGTCTTCGGCCGGGCTGTCGAGAACTTTTCCTGTGTCGGCTTTCGAGGTTAAAGAACTTCAGAAGGTGGAAGAGAAGAAGAACAGCAAAGATGTGGAAGAAGTTGTGAATGTAGCACCTACAACTATACAAGTGAAGCAGGTCTGA

Coding sequence (CDS)

ATGTCCCTTGTCACAGAAGAGATCAAAGCCAAAGCTGATGAGGTCTACTATGGAGATGAGATATGCCAAGAGAAATCAAGGGAGTTGCTCAAAGAAGTGGGGTTTCCAAATGGGGTGTTGCCAATGAAAGACATGGAGGAATGTGGGATTGTGAGAGAGACAGGGTTTGTTTGGCTGAAGCAGAAAAAGAGCTACACTCATAAGTTTGAGGAGATTGGGAGGCTCGTCAGTTATGCCAAAGAAGTTACTGCCTATGTGGAGAAAAACAGGGTTAAGAAGCTCACTGGAGTCAAGGCCAAGGAGCTTTTGATTTGGCTCTCACTCTGTGAGATCTATGTTGATGACCCACCAACTGGAAAAATCTCGTTCAAGTCTTCGGCCGGGCTGTCGAGAACTTTTCCTGTGTCGGCTTTCGAGGTTAAAGAACTTCAGAAGGTGGAAGAGAAGAAGAACAGCAAAGATGTGGAAGAAGTTGTGAATGTAGCACCTACAACTATACAAGTGAAGCAGGTCTGA

Protein sequence

MSLVTEEIKAKADEVYYGDEICQEKSRELLKEVGFPNGVLPMKDMEECGIVRETGFVWLKQKKSYTHKFEEIGRLVSYAKEVTAYVEKNRVKKLTGVKAKELLIWLSLCEIYVDDPPTGKISFKSSAGLSRTFPVSAFEVKELQKVEEKKNSKDVEEVVNVAPTTIQVKQV
Homology
BLAST of Lag0006487 vs. NCBI nr
Match: XP_022156386.1 (uncharacterized protein LOC111023292 [Momordica charantia])

HSP 1 Score: 269.6 bits (688), Expect = 1.8e-68
Identity = 139/172 (80.81%), Postives = 153/172 (88.95%), Query Frame = 0

Query: 1   MSLVTEEIKAKADEVYYGDEICQEKSRELLKEVGFPNGVLPMKDMEECGIVRETGFVWLK 60
           MSLVTEEIKAKADEVYYGDE CQEKS+ELLKEVG PNG+LPMKDMEECGIVRETGFVWLK
Sbjct: 1   MSLVTEEIKAKADEVYYGDEKCQEKSKELLKEVGLPNGLLPMKDMEECGIVRETGFVWLK 60

Query: 61  QKKSYTHKFEEIGRLVSYAKEVTAYVEKNRVKKLTGVKAKELLIWLSLCEIYVDDPPTGK 120
           QKKSYTH FE+IGRLV+YA EVTAYVE NR+KKLTGVKAKELLIWL L EIYVDDPPTGK
Sbjct: 61  QKKSYTHNFEKIGRLVTYATEVTAYVENNRIKKLTGVKAKELLIWLKLNEIYVDDPPTGK 120

Query: 121 ISFKSSAGLSRTFPVSAFEV-KELQKVEEKKNSKDVEEVVNVAPTTIQVKQV 172
           I+F+S  GLSR+FPVSAFEV +E+++VEEK   K   EVVN A T I+VK+V
Sbjct: 121 ITFRSPTGLSRSFPVSAFEVEEEVKEVEEKGKEK---EVVNAATTAIEVKEV 169

BLAST of Lag0006487 vs. NCBI nr
Match: XP_023545329.1 (uncharacterized protein LOC111804771 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.5 bits (667), Expect = 4.9e-66
Identity = 132/173 (76.30%), Postives = 155/173 (89.60%), Query Frame = 0

Query: 1   MSLVTEEIKAKADEVYYGDEICQEKSRELLKEVGFPNGVLPMKDMEECGIVRETGFVWLK 60
           MSLVTE IKAKADEVY+GDEICQ K+RELLKE+  PNG+LPMKDMEECGI++ETGFVWLK
Sbjct: 1   MSLVTEAIKAKADEVYHGDEICQAKTRELLKEMDLPNGLLPMKDMEECGIIKETGFVWLK 60

Query: 61  QKKSYTHKFEEIGRLVSYAKEVTAYVEKNRVKKLTGVKAKELLIWLSLCEIYVDDPPTGK 120
           QKKSYTHKF++IGRLV+Y KEVTAYVEKN+VKKLTGVKAKELLIWLSL +IYVDDPPTGK
Sbjct: 61  QKKSYTHKFQDIGRLVTYGKEVTAYVEKNKVKKLTGVKAKELLIWLSLSDIYVDDPPTGK 120

Query: 121 ISFKSSAGLSRTFPVSAFEVKE--LQKVEEKKNSKDVEEVVNVAPTTIQVKQV 172
           I+FK++ GL RTFPVSAFEV+E  ++ VE K N++  +EVV+VA   I+VKQ+
Sbjct: 121 ITFKATTGLFRTFPVSAFEVEEDVVKDVEVKNNNE--KEVVSVAAAAIEVKQI 171

BLAST of Lag0006487 vs. NCBI nr
Match: XP_022946516.1 (uncharacterized protein LOC111450553 [Cucurbita moschata] >KAG6599174.1 hypothetical protein SDJN03_08952, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030112.1 hypothetical protein SDJN02_08459, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.8 bits (660), Expect = 3.2e-65
Identity = 131/173 (75.72%), Postives = 154/173 (89.02%), Query Frame = 0

Query: 1   MSLVTEEIKAKADEVYYGDEICQEKSRELLKEVGFPNGVLPMKDMEECGIVRETGFVWLK 60
           MSLVTE IKAKADEVY+GDEICQ K+RELLKE+  PNG+LPMKDMEECGI++ETGFVWLK
Sbjct: 1   MSLVTEAIKAKADEVYHGDEICQAKTRELLKEMDLPNGLLPMKDMEECGIIKETGFVWLK 60

Query: 61  QKKSYTHKFEEIGRLVSYAKEVTAYVEKNRVKKLTGVKAKELLIWLSLCEIYVDDPPTGK 120
           QKKSYTHKF++IGRLV+Y KEVTAYVEKN+VKKLTGVKAKELLIWLSL +IYVD PPTGK
Sbjct: 61  QKKSYTHKFQDIGRLVTYGKEVTAYVEKNKVKKLTGVKAKELLIWLSLSDIYVDHPPTGK 120

Query: 121 ISFKSSAGLSRTFPVSAFEVKE--LQKVEEKKNSKDVEEVVNVAPTTIQVKQV 172
           I+FK++ GL RTFPVSAFEV+E  ++ VE K N++  +EVV+VA   I+VKQ+
Sbjct: 121 ITFKATTGLFRTFPVSAFEVEEDVVKDVEVKNNNE--KEVVSVAAAAIEVKQI 171

BLAST of Lag0006487 vs. NCBI nr
Match: XP_038889922.1 (uncharacterized protein LOC120079689 [Benincasa hispida])

HSP 1 Score: 258.8 bits (660), Expect = 3.2e-65
Identity = 127/171 (74.27%), Postives = 153/171 (89.47%), Query Frame = 0

Query: 1   MSLVTEEIKAKADEVYYGDEICQEKSRELLKEVGFPNGVLPMKDMEECGIVRETGFVWLK 60
           MSL+TEEIKAKADE+YYGDE+C+ KSRELLKE+  PNG+LPMKDMEECG+V+ETGFVWLK
Sbjct: 1   MSLITEEIKAKADELYYGDEMCRIKSRELLKEMDLPNGLLPMKDMEECGMVKETGFVWLK 60

Query: 61  QKKSYTHKFEEIGRLVSYAKEVTAYVEKNRVKKLTGVKAKELLIWLSLCEIYVDDPPTGK 120
           QKKSYTHKFE+I RLV+Y  EVTAYVEKN+VKKLTGVKAKELL+WL LC+IYV++PP GK
Sbjct: 61  QKKSYTHKFEDIDRLVTYGTEVTAYVEKNKVKKLTGVKAKELLLWLPLCDIYVNEPPNGK 120

Query: 121 ISFKSSAGLSRTFPVSAFEVKELQKVEEKKNSKDVEEVVNVAPTTIQVKQV 172
           I+FKS+ GLSRTFPVSAF+V+E  K EE+K++K+ +EVV  A   I+VK+V
Sbjct: 121 ITFKSTTGLSRTFPVSAFQVEEKVKDEEEKDNKE-KEVVKAAAAAIEVKEV 170

BLAST of Lag0006487 vs. NCBI nr
Match: XP_022999308.1 (uncharacterized protein LOC111493722 [Cucurbita maxima])

HSP 1 Score: 254.6 bits (649), Expect = 6.0e-64
Identity = 129/172 (75.00%), Postives = 150/172 (87.21%), Query Frame = 0

Query: 1   MSLVTEEIKAKADEVYYGDEICQEKSRELLKEVGFPNGVLPMKDMEECGIVRETGFVWLK 60
           MSLVTE IKAKADEVY+GDEICQ K+RELLKE+  PNG+LPMKDMEECGI++ETGFVWLK
Sbjct: 1   MSLVTEAIKAKADEVYHGDEICQAKTRELLKEMDLPNGLLPMKDMEECGIIKETGFVWLK 60

Query: 61  QKKSYTHKFEEIGRLVSYAKEVTAYVEKNRVKKLTGVKAKELLIWLSLCEIYVDDPPTGK 120
           QKKSYTHKF++IGRLV+Y KEVTAYV+KN+VKKLTGVKAKELLIWLSL +I VDDPPTGK
Sbjct: 61  QKKSYTHKFQDIGRLVTYGKEVTAYVQKNKVKKLTGVKAKELLIWLSLSDISVDDPPTGK 120

Query: 121 ISFKSSAGLSRTFPVSAFEVKE-LQKVEEKKNSKDVEEVVNVAPTTIQVKQV 172
           I+FK++ GL RTFPVSAFEV+E + K  E KN+K+ E V   A   I+VKQ+
Sbjct: 121 ITFKATTGLFRTFPVSAFEVEEDVVKDVEVKNNKEKEVVSVAAAAAIEVKQI 172

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156386.11.8e-6880.81uncharacterized protein LOC111023292 [Momordica charantia][more]
XP_023545329.14.9e-6676.30uncharacterized protein LOC111804771 [Cucurbita pepo subsp. pepo][more]
XP_022946516.13.2e-6575.72uncharacterized protein LOC111450553 [Cucurbita moschata] >KAG6599174.1 hypothet... [more]
XP_038889922.13.2e-6574.27uncharacterized protein LOC120079689 [Benincasa hispida][more]
XP_022999308.16.0e-6475.00uncharacterized protein LOC111493722 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036758At5g01610-like superfamilyGENE3D2.30.240.10coord: 7..149
e-value: 2.4E-37
score: 129.7
IPR036758At5g01610-like superfamilySUPERFAMILY141562At5g01610-likecoord: 13..142
IPR007493Protein of unknown function DUF538PFAMPF04398DUF538coord: 27..139
e-value: 1.6E-33
score: 115.5
IPR007493Protein of unknown function DUF538PANTHERPTHR31676T31J12.3 PROTEIN-RELATEDcoord: 2..158
NoneNo IPR availablePANTHERPTHR31676:SF144SUBFAMILY NOT NAMEDcoord: 2..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006487.1Lag0006487.1mRNA