Lag0006483 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006483
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTrafficking protein particle complex subunit
Locationchr6: 42925316 .. 42926670 (+)
RNA-Seq ExpressionLag0006483
SyntenyLag0006483
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAATTTACAGTCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGTAATCAACCCATAGAAATTACTCGTTTATGCAATCGGAATTGCAATTTTCTGTTAATTCCCCACCTGGATTGAGAATTTTGATGCCAAATCAAGATTTCAGTTTTTGATTCGTATAGGAAGGGTAAAATCTCTCTGTCTGCCAGTCAATGTGATCATCAGATTTTCAATCGACCTTCAACTTGTGATATATAATTTGGGTTTGGGTGGAATTAGTTTAATCTTCAGTGGGCGTTTTATTTGGATTGAATCTCTTATTGGGTTTGTTCGAAAATTTAGGATTATGGGTCTGCTGGACGAATGGACACAAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTGTAGCCGGTTGTTCGGGTATTGAACTCCTTGAAGCCGACACTTTCGACCTCCATTGCTTCCAGTCACTTACTGGTATATTTTTCCTTCCACTCGTTTGTATAACTTTTGCATCAACCACATGGATTCTGTCTCAAACACTGTGATCTAAAGATAAGCAATTAAGTTCCAGAATGGGAAAGCACAATTGATGTTCTAGAAACGTTATTGATCTTTTTTTTTTCTTGTTTTCAGTTCAACAATATAATATGGGGGTGGAGATTTGAATCTCTAACCTTTAGGCTATTGATCTTCTCTTCTATCAGCAAAATGCAGTTTTTTTAGTAACATATTATAGTCTCCTTCACATATATGATTATGCTGTCAGACTTGGGGAAAGAAACTAGTATGTGGTACAACAGGAATTGCAAAATAAGTTTTCCGAAACTTGTCTTTGTAACTGTTTATGTTAAGTGTTTTTTCGTTACACGTTGTCGTGCCTGCAGGAAGGAAGGAGAGTTAAAGATTGTTTTGATGCAGACATGAATGGCTTTTGATCTGAAGGGTTAATTACCATTATAAACCTAAATAAGAGATTGAAATGCTTGTTTCATAGTATAATTTTGTATTTCCTTGTTCAACTATTTGTTATCTTTGCAGAGTCTCACGACAGTAACTTTCATTTTGTATTTCTATGCTAGTTCTTAATAAAGAATGCTGAATCATGAATGAAATTGTTTATTGCAGGGACGAAGTTTTTTGTCGTGTGTGAACCTGGGACACAGCACATGGAGGGTCTTCTGAAATACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGTGAGCTCTTTGACATCAACCTATCACAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGCTCGATGA

mRNA sequence

ATGGCAGCAATTTACAGTCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTGTAGCCGGTTGTTCGGGTATTGAACTCCTTGAAGCCGACACTTTCGACCTCCATTGCTTCCAGTCACTTACTGGGACGAAGTTTTTTGTCGTGTGTGAACCTGGGACACAGCACATGGAGGGTCTTCTGAAATACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGTGAGCTCTTTGACATCAACCTATCACAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGCTCGATGA

Coding sequence (CDS)

ATGGCAGCAATTTACAGTCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTGTAGCCGGTTGTTCGGGTATTGAACTCCTTGAAGCCGACACTTTCGACCTCCATTGCTTCCAGTCACTTACTGGGACGAAGTTTTTTGTCGTGTGTGAACCTGGGACACAGCACATGGAGGGTCTTCTGAAATACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGTGAGCTCTTTGACATCAACCTATCACAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGCTCGATGA

Protein sequence

MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALLAR
Homology
[Close]
BLAST of Lag0006483 vs. NCBI nr
Match: XP_022156391.1 (trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156392.1 trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156393.1 trafficking protein particle complex subunit 4 [Momordica charantia])

HSP 1 Score: 285.8 bits (730), Expect = 2.0e-73
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP++GCSGIE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVALLAR 142
           ELFDINLSQAVQKDRVAL  R
Sbjct: 121 ELFDINLSQAVQKDRVALFGR 141

[Close]
BLAST of Lag0006483 vs. NCBI nr
Match: KGN61053.2 (hypothetical protein Csa_021294 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 4.5e-73
Identity = 136/141 (96.45%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+AGCSG+E
Sbjct: 444 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 503

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 504 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 563

Query: 121 ELFDINLSQAVQKDRVALLAR 142
           ELFDINL+QAVQKDRVALL R
Sbjct: 564 ELFDINLAQAVQKDRVALLGR 584

[Close]
BLAST of Lag0006483 vs. NCBI nr
Match: XP_004144741.1 (trafficking protein particle complex subunit 4 [Cucumis sativus] >XP_038889173.1 trafficking protein particle complex subunit 4 [Benincasa hispida])

HSP 1 Score: 284.6 bits (727), Expect = 4.5e-73
Identity = 136/141 (96.45%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+AGCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVALLAR 142
           ELFDINL+QAVQKDRVALL R
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]
BLAST of Lag0006483 vs. NCBI nr
Match: XP_041018648.1 (trafficking protein particle complex subunit 4 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLK IYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKAIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVALLAR 142
           ELFDINL+QAVQKDRVALL R
Sbjct: 121 ELFDINLTQAVQKDRVALLGR 141

[Close]
BLAST of Lag0006483 vs. NCBI nr
Match: XP_008453237.1 (PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo] >KAA0048113.1 trafficking protein particle complex subunit 4 [Cucumis melo var. makuwa] >TYJ96439.1 trafficking protein particle complex subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+AGCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVALLAR 142
           ELFDINL+QAVQK+RVALL R
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]
BLAST of Lag0006483 vs. ExPASy Swiss-Prot
Match: Q54UU1 (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=trappc4 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-34
Identity = 67/127 (52.76%), Postives = 95/127 (74.80%), Query Frame = 0 

Query: 4   IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAG-CSGIELL 63
           I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSPV+G  SGIE++
Sbjct: 3   INSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVI 62

Query: 64  EADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCEL 123
           E + F L CFQ+ TG KF+V+ +P  Q +E LL  +YELYTD+VLKNPFYE+EM IRC+L
Sbjct: 63  ETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDL 122

Query: 124 FDINLSQ 130
           FD  L++
Sbjct: 123 FDYKLNR 129

[Close]
BLAST of Lag0006483 vs. ExPASy Swiss-Prot
Match: Q2TBL9 (Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-31
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 0 

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLSQAVQ 133
               ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of Lag0006483 vs. ExPASy Swiss-Prot
Match: Q9ES56 (Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-31
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 0 

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLSQAVQ 133
               ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of Lag0006483 vs. ExPASy Swiss-Prot
Match: Q69BT7 (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-31
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 0 

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLSQAVQ 133
               ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of Lag0006483 vs. ExPASy Swiss-Prot
Match: Q9Y296 (Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.4e-31
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = 0 

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query: 87  GTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLSQAVQ 133
               ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

The following BLAST results are available for this feature:
BLAST of Lag0006483 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156391.12.0e-7397.16trafficking protein particle complex subunit 4 [Momordica charantia] >XP_0221563... [more]
KGN61053.24.5e-7396.45hypothetical protein Csa_021294 [Cucumis sativus][more]
XP_004144741.14.5e-7396.45trafficking protein particle complex subunit 4 [Cucumis sativus] >XP_038889173.1... [more]
XP_041018648.11.3e-7297.16trafficking protein particle complex subunit 4 [Juglans microcarpa x Juglans reg... [more]
XP_008453237.11.3e-7295.74PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo] >KAA004... [more]
BLAST of Lag0006483 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q54UU11.9e-3452.76Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44... [more]
Q2TBL92.0e-3158.49Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 ... [more]
Q9ES562.0e-3158.49Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trapp... [more]
Q69BT72.0e-3158.49Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=... [more]
Q9Y2964.4e-3157.55Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 4..134
e-value: 2.5E-70
score: 249.7
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 4..133
e-value: 4.4E-53
score: 179.0
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNITcoord: 1..141
NoneNo IPR availableGENE3D3.30.450.70coord: 2..133
e-value: 7.7E-49
score: 167.7
NoneNo IPR availablePANTHERPTHR23249:SF17TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT-RELATEDcoord: 1..141
NoneNo IPR availableCDDcd14856TRAPPC4_synbindincoord: 5..130
e-value: 1.05731E-85
score: 244.35
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006483.1Lag0006483.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0030008 TRAPP complex