Lag0006412 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006412
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	S-adenosyl-l-methionine decarboxylase leader peptide
Location	chr6: 42179824 .. 42182259 (+)
RNA-Seq Expression	Lag0006412
Synteny	Lag0006412

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGATCAGGTGCCTAGCCGCTTTCGACATGTCGTAGTGGACCTATTTATTTTTTCACTTTTTAAATTAAATTTAAATAAAAAGTATAATATATCCCAATTCCCGAAGTGGGTTTTATTGAAATAATGCAATTCAATTCTCTTCCAAGTCTTTTTATTCTCTTATTTCATTTTTCTAAATTGTAATTATTTTCTTCTTGAAAAATAAAATGATGCATGCACGAGAAAAATATTTTTATTTCGTTTTTTTTTTTGTCCATTTTAACTTTTTTCTAATTTTTAAAAAACAACCTCTAAAAGTTATACACCAAAAATCACTCCATAATAACTTGATACTTGTAGAATTTTTTTTAGTACAATATTTATGAAAATAGAAAATTTTGAACATAGAGCTATACTTATGTTAGTCATCAATCATATGTAGCTAAATAAACTTGTAATTAATATAACTTTTTAAAACATGTAACAAAATACCTAACCGTTTTGAATGAAAACTATTTATATTAAAAGATTGTTTGAATCATTTGAAACTTTGTCTTTCTTACATGTGACTATAGATTGTAATAGGAGGACAGATTTCTTAGCAAAGAATGCATTAGCTCAACAAACCTCTGTGCTTTGGTTAGAGAACGTCCCACCAGAGCCTGAATTATTGAGTAAGTTAACTCATTGCAACTTTAATGTATCTTAAAAAAACAAGTATGATAAAGCACAAACTTATTGGTTAACATTAGAGGTAAAACAAAGAAGAAAATTTTCATATTAATAGGAAAAAAAAAGATTTTAAAGTTCTCTTCTAATTTATGTTTCTAAATTTTGCTTAACATTGATTATAATGCAAATGTTAAAATGAATCTAGAGACAAAGGTAATGATACACATTTGATTCAAACCTAGTTGAACTTGTCAAATCGTACAAATCTATGCATAATTCAATTGATTAATAAATACTCTTGATCGAGTGGTTAGAATTCGAATTCTTATTGAATTAAAAAAAAAATGGTCAAAAGGTGAAACAAGTAATAACCATACCTTAAAAAAAGTATAAGGTTAAATTATCAAGAAAACTCCCTGGATTATGGGATTGGTATCAATTATATCCCTGAGTTTTCAAAAGTTTAATTTTAACCCTTAAAGTTTGAAATTTGTTTCAAAATGACCTTTGAAGACTTATTTCGCAAAATTCATGGATGGAAAATGACGTGTTTGCATATATATATTTGCTTATGTGAATAGATTTGAACACAGGTAGAAAAACAATAAAAACACATGCAAACATGTTATTTTTTGTAAATAAATTTAACGGAAAATTTCTCCAAGGATCGTTTTGACAAACTTCAAATTTCAAATGGGCTAAAATAAAACATTTGAAAGTTAGGGGCATAATTGAAACCAACCTAATAGTTAAGGGGTATTTTTGATAATTTAACCAAAAAATAATGATATCATTTGGGTAATTTTGATAAATAAAATTTGAAAAGGGGTACATATGCAAAAGAAAAAACTATAGATTTATTCCCTGTCCCTACTCCATTTCAGGCCAAGTAAATACTCGACGTGCCAAGCTCTTCCCCTCGCTTCACTGCCACGTGGACATCCCACGTGCGGAAAATATTTGCAGAAAGCCCCTCCCACTATCACAAAATTATCGGATACAAGCACTCTGAATTCTCAAACTCACCCCTTCTCCACTCTATTCTTTATTCTTCACTCCCTTTTTTGCACTAACGCCACTCCATACGGCTGACGCAAACCTTAGGGGCACCTTCCACTTCGCCTCTATAAATAGCCTCTCTCCGATTCCCTCTCTTTCTCACAAAGCCAAAGTCCTCTGTTCGCTCTGCATCTCTCGTTCTCAACCCCAAAATCCTTCTTCATTCTCCTAATTTTCTTGTGGTTTTCTAAATCTTTCTTTCTTTGGAAATTTTCCCTATATTTATTCCGCCATCGACGAAGATTTTGCAAGTATCTGAGGTTAGGGTTCCTTTTTTGTTATTGTAATTCTTTTTCCGTTTCTTTTCTTCTTGAAAGAAAGGTATTTCTATGTTAATGCATCTTGATCTGAACTGTGTTGTGGAATTTCTGATTTCTGAATTTGGTTGTTTCGATCTCTGTTTTTTGTCTGTTTTGGTTGCAGAGAAGAAGCGTGGATGTTGTAATGGAGGCGAAAGGCGGTAAGAAGAAGTCTAGCAGTAGTAGTGGCAATAGTAGTAAAAGGCTACAATACGAAGCTCCTCTTGGTTACATTATTGAAGACGTTCGTCCCCACGGTGGCATTGAGAAGTTCCGATCTGCTGCGTATTCCAACGTAAGACTGTTCTTCGATTTCTTCTTTGAGTTCTTGAGCGACTTTGTGAATTATTGCGTTGTAATTGTGTTTTTTTTTTTTTGTGTTGATTTTTCTCTCTTTGCAGTGCGTGAGGAAGCCATCCTGA

mRNA sequence

ATGACGGATCAGAGAAGAAGCGTGGATGTTGTAATGGAGGCGAAAGGCGGTAAGAAGAAGTCTAGCAGTAGTAGTGGCAATAGTAGTAAAAGGCTACAATACGAAGCTCCTCTTGGTTACATTATTGAAGACGTTCGTCCCCACGGTGGCATTGAGAAGTTCCGATCTGCTGCGTATTCCAACTGCGTGAGGAAGCCATCCTGA

Coding sequence (CDS)

ATGACGGATCAGAGAAGAAGCGTGGATGTTGTAATGGAGGCGAAAGGCGGTAAGAAGAAGTCTAGCAGTAGTAGTGGCAATAGTAGTAAAAGGCTACAATACGAAGCTCCTCTTGGTTACATTATTGAAGACGTTCGTCCCCACGGTGGCATTGAGAAGTTCCGATCTGCTGCGTATTCCAACTGCGTGAGGAAGCCATCCTGA

Protein sequence

MTDQRRSVDVVMEAKGGKKKSSSSSGNSSKRLQYEAPLGYIIEDVRPHGGIEKFRSAAYSNCVRKPS

Homology

[Close]

BLAST of Lag0006412 vs. NCBI nr
Match: TYJ96391.1 (S-adenosylmethionine decarboxylase proenzyme-like [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 3.5e-23
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 4  QRRSVDVVMEAKGGKKKSSSSSGNSSKRLQYEAPLGYIIEDVRPHGGIEKFRSAAYSNCV 63
          +RRSVDVVME KGGKKKS+SSS  SSKR QYEAPLGYIIEDVRPHGGIEKFRSAAYSNCV
Sbjct: 12 KRRSVDVVMETKGGKKKSNSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNCV 71

Query: 64 RKPS 68
          RKPS
Sbjct: 72 RKPS 75

[Close]

BLAST of Lag0006412 vs. NCBI nr
Match: XP_038890197.1 (S-adenosylmethionine decarboxylase proenzyme-like [Benincasa hispida])

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 3   DQRRSVDVVMEAKGGKKKSSSSSGNSSKRLQYEAPLGYIIEDVRPHGGIEKFRSAAYSNC 62
           D RRSVDVVM+ +GGKKKSSSSS  SSKR QYEAPLGYIIEDVRPHGGIEKFRSAAYSNC
Sbjct: 107 DFRRSVDVVMKTEGGKKKSSSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNC 166

Query: 63  VRKPS 68
           VRKPS
Sbjct: 167 VRKPS 171

[Close]

BLAST of Lag0006412 vs. NCBI nr
Match: KAG6599133.1 (hypothetical protein SDJN03_08911, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.0 bits (284), Expect = 5.0e-22
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 3  DQRRSVDVVMEAKGGKKKSSSSS-GNSSKRLQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 62
          D RRSVDVVMEAKGGKKKSSSSS   SSKR QYEAPLGYIIEDVRPHGGI+KFRSAAYSN
Sbjct: 26 DFRRSVDVVMEAKGGKKKSSSSSCSKSSKRQQYEAPLGYIIEDVRPHGGIQKFRSAAYSN 85

Query: 63 CVRKPS 68
          C+RKPS
Sbjct: 86 CMRKPS 91

[Close]

BLAST of Lag0006412 vs. NCBI nr
Match: KAG7030075.1 (hypothetical protein SDJN02_08422, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 8.5e-22
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 5  RRSVDVVMEAKGGKKKSSSSS-GNSSKRLQYEAPLGYIIEDVRPHGGIEKFRSAAYSNCV 64
          RRSVDVVMEAKGGKKKSSSSS   SSKR QYEAPLGYIIEDVRPHGGI+KFRSAAYSNC+
Sbjct: 12 RRSVDVVMEAKGGKKKSSSSSCSKSSKRQQYEAPLGYIIEDVRPHGGIQKFRSAAYSNCM 71

Query: 65 RKPS 68
          RKPS
Sbjct: 72 RKPS 75

[Close]

BLAST of Lag0006412 vs. NCBI nr
Match: KAG6586035.1 (hypothetical protein SDJN03_18768, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-21
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 5  RRSVDVVMEAKGGKKKSSSSSGNSSKRLQYEAPLGYIIEDVRPHGGIEKFRSAAYSNCVR 64
          RRSV+VVMEAK G KKS S S NSSKR QYEAPLGYIIEDVRPHGGIEKFRSAAYSNCVR
Sbjct: 10 RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNCVR 69

Query: 65 KPS 68
          KPS
Sbjct: 70 KPS 72

The following BLAST results are available for this feature:

BLAST of Lag0006412 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96391.1	3.5e-23	90.63	S-adenosylmethionine decarboxylase proenzyme-like [Cucumis melo var. makuwa]	[more]
XP_038890197.1	1.0e-22	89.23	S-adenosylmethionine decarboxylase proenzyme-like [Benincasa hispida]	[more]
KAG6599133.1	5.0e-22	89.39	hypothetical protein SDJN03_08911, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7030075.1	8.5e-22	90.63	hypothetical protein SDJN02_08422, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6586035.1	2.5e-21	88.89	hypothetical protein SDJN03_18768, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0006412 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012511	S-adenosyl-l-methionine decarboxylase leader peptide	PFAM	PF08132	AdoMetDC_leader	coord: 12..67 e-value: 7.3E-30 score: 102.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR35727	BNAA05G33520D PROTEIN	coord: 12..67
None	No IPR available	PANTHER	PTHR35727:SF2	SUBFAMILY NOT NAMED	coord: 12..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006412.1	Lag0006412.1	mRNA