Lag0006381 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006381
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ISWI chromatin-remodeling complex ATPase CHR11
Location	chr6: 41862485 .. 41864402 (+)
RNA-Seq Expression	Lag0006381
Synteny	Lag0006381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTTTTTCGTGCTTAGATCTGAGGTCGTGGTGGTCGTAGGTTCGTGAGTTTGTGGGTTTATTCCATTGTGATCACAAAACTCACTCTCAACCGGTGAGTGCTTTCGAATCGATGCCAAAACAGAGTCATTGTCATTGGTACGATCTTATTCTTGTGTGATTTTGTTTTCTGGGTAGGAGCGAATGTGAGCTATGATATGTCGTGCTGAAGATATATATTTTTGCAAAATTTAGGTGTTTGTATCCAGTGAAAAGTGATATCATCATGCGCTGATTTATAGCATTATTATTTGAAGAACTATTGTAAAATTTCAAAGACAACTTTCTTTATCTTTCTTAGGTACTTTTTGTGGCTGTATATAGCCATTACAAATGAATATATCATTCTTCCTTGGAAAAAAATGTTAGTTTTCCTATAACATTTGCATTTAAAATATAACATTTGCATCAGAATTGTTATTTGGTAAAAATATTTTCCTTCAGTCCATGTCCATAACTAGTTGTTACTGATATTGTGGATTCATGTAGCAGGTCAGGAACTGAATCAGGAACCCATCAGTATGCAATATTGATTTGCATTTAAAAGAAATTGGCAAGTAGTTTTAACTAATGTTTATATGGTTTTGACAGCTGCTGAATTGTATGATTTTGATGATGAAAAGGTAAATAATGATTAGACAAGATTCTTGCTATCCACTTCGAGAATTTCATTCCAATATTATTCTTATGTTTATCATTCAAATGCTATTAAAGAAAGTGTTCTGACAGTTTACTTTGTTTGTATCTTGATGAAGGATGAGAATAAATTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAGCAGAAGCGCAAGTAATGACTTCAATTTCTTTTCCTCTTTTACTACATGAATTTCATACTTAATTTTATAATTTTTGGAAAGCCTGACACTTGTTTTCTCCCTCCTATAAGTTACTCGGAATCAGAATACTTTAAGCAAACGATGCGGCAGGGTGGTCCAACAAAACCAAAAGAGCCTAGGATTCCTCGCATGCCTCAGTTGTAAGGCTCTGAAATTGGTTGATTTATCTAGGAGCTCCAGTTTTTTCCCCTCTTATTATTATATGCTGCTTACATGTATGTATTTTTCCAATTTTGTATCGTTTTATTTACATCTTTTAAATGGATATATTGCACTTTTGTTTATAGGCACGATTTCCAGTTTTTTAACACACAAAGGTTGAGTGAACTCTATGAAAAAGAAGTACGGTATCTCATGGTGAGTGTAAGATTCTTTAGTATTCTTTTCTGTTTTAACATTAATTGCTTGTGTTTATTCAACATTTTTACTTTATCTTTTTTCAATTCTCATTGGATTGTATGGCCCAGCAAACACATCAAAAGAATCAGTTGAAGGACACAATAGATGTTGAGGAGACTGAAGGTATGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGATCCCGACACCAGGCTTCCCCATATGTTTCTAGGAGGTTAGGCTAACTTTATTTTGTTTTCATGGACAATCTGGTTTTCTGTAAGAAATATGAATGAACCTGGTTTAGTGCAGTCTTGTTCACTTATTCGATGCATTTCTAGCTTCCGGAGATAATTAAAATGTTTTCTCTTTGGCATTGATTGGCTCATCCCGATGTTTGACCCAGTTTAGTGGATTATGACTGATAGTTAATTTAGCTTCTAATATTTCCAGGCAATGCTTTGATTATTAATTTTCCGGAGGCTGCTTCCTTTGGGCAATTTTTGCTGTCTTTTAAAGGACATGGTTGGAACAAGACAAGAGCCATGGTGACCAAACAGCTATGTTGTTGGATATCTTTGGTTGAAGATTGTCATCAAACATTTACATTGAAGCTTAGACCATTGTTTTAA

mRNA sequence

ATGTGGTTTTTCGTGCTTAGATCTGAGGTCGTGGTGGTCGTAGGTCAGGAACTGAATCAGGAACCCATCACTGCTGAATTGTATGATTTTGATGATGAAAAGGATGAGAATAAATTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAGCAGAAGCGCAATTACTCGGAATCAGAATACTTTAAGCAAACGATGCGGCAGGGTGGTCCAACAAAACCAAAAGAGCCTAGGATTCCTCGCATGCCTCAGTTGCACGATTTCCAGTTTTTTAACACACAAAGGTTGAGTGAACTCTATGAAAAAGAAGTACGGTATCTCATGCAAACACATCAAAAGAATCAGTTGAAGGACACAATAGATGTTGAGGAGACTGAAGGCAATGCTTTGATTATTAATTTTCCGGAGGCTGCTTCCTTTGGGCAATTTTTGCTGTCTTTTAAAGGACATGGTTGGAACAAGACAAGAGCCATGGTGACCAAACAGCTATGTTGTTGGATATCTTTGGTTGAAGATTGTCATCAAACATTTACATTGAAGCTTAGACCATTGTTTTAA

Coding sequence (CDS)

ATGTGGTTTTTCGTGCTTAGATCTGAGGTCGTGGTGGTCGTAGGTCAGGAACTGAATCAGGAACCCATCACTGCTGAATTGTATGATTTTGATGATGAAAAGGATGAGAATAAATTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAGCAGAAGCGCAATTACTCGGAATCAGAATACTTTAAGCAAACGATGCGGCAGGGTGGTCCAACAAAACCAAAAGAGCCTAGGATTCCTCGCATGCCTCAGTTGCACGATTTCCAGTTTTTTAACACACAAAGGTTGAGTGAACTCTATGAAAAAGAAGTACGGTATCTCATGCAAACACATCAAAAGAATCAGTTGAAGGACACAATAGATGTTGAGGAGACTGAAGGCAATGCTTTGATTATTAATTTTCCGGAGGCTGCTTCCTTTGGGCAATTTTTGCTGTCTTTTAAAGGACATGGTTGGAACAAGACAAGAGCCATGGTGACCAAACAGCTATGTTGTTGGATATCTTTGGTTGAAGATTGTCATCAAACATTTACATTGAAGCTTAGACCATTGTTTTAA

Protein sequence

MWFFVLRSEVVVVVGQELNQEPITAELYDFDDEKDENKFDFKKIVSENWIEPPKREQKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEETEGNALIINFPEAASFGQFLLSFKGHGWNKTRAMVTKQLCCWISLVEDCHQTFTLKLRPLF

Homology

[Close]

BLAST of Lag0006381 vs. NCBI nr
Match: XP_008458481.1 (PREDICTED: ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 [Cucumis melo])

HSP 1 Score: 216.1 bits (549), Expect = 2.6e-52
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 24  TAELYDFDDEKDENKFDFKKIVSENWIEPPKREQKRNYSESEYFKQTMRQGGPTKPKEPR 83
           TAELYDFDDEKDENKFDFKKIVSENWIEPPKRE+KRNYSESEYFKQTMRQGGPTKPKEPR
Sbjct: 721 TAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPR 780

Query: 84  IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEETE 132
           IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEE E
Sbjct: 781 IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPE 828

[Close]

BLAST of Lag0006381 vs. NCBI nr
Match: XP_022138478.1 (ISWI chromatin-remodeling complex ATPase CHR11 isoform X2 [Momordica charantia])

HSP 1 Score: 216.1 bits (549), Expect = 2.6e-52
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 24  TAELYDFDDEKDENKFDFKKIVSENWIEPPKREQKRNYSESEYFKQTMRQGGPTKPKEPR 83
           TAELYDFDDEKDENKFDFKKIVSENWIEPPKRE+KRNYSESEYFKQTMRQGGPTKPKEPR
Sbjct: 721 TAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPR 780

Query: 84  IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEETE 132
           IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEE E
Sbjct: 781 IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPE 828

[Close]

BLAST of Lag0006381 vs. NCBI nr
Match: KAA0033470.1 (ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 2.6e-52
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 24  TAELYDFDDEKDENKFDFKKIVSENWIEPPKREQKRNYSESEYFKQTMRQGGPTKPKEPR 83
           TAELYDFDDEKDENKFDFKKIVSENWIEPPKRE+KRNYSESEYFKQTMRQGGPTKPKEPR
Sbjct: 727 TAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPR 786

Query: 84  IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEETE 132
           IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEE E
Sbjct: 787 IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPE 834

[Close]

BLAST of Lag0006381 vs. NCBI nr
Match: XP_022138477.1 (ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 [Momordica charantia])

HSP 1 Score: 216.1 bits (549), Expect = 2.6e-52
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 24  TAELYDFDDEKDENKFDFKKIVSENWIEPPKREQKRNYSESEYFKQTMRQGGPTKPKEPR 83
           TAELYDFDDEKDENKFDFKKIVSENWIEPPKRE+KRNYSESEYFKQTMRQGGPTKPKEPR
Sbjct: 721 TAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPR 780

Query: 84  IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEETE 132
           IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEE E
Sbjct: 781 IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPE 828

[Close]

BLAST of Lag0006381 vs. NCBI nr
Match: XP_038874770.1 (ISWI chromatin-remodeling complex ATPase CHR11 isoform X2 [Benincasa hispida])

HSP 1 Score: 216.1 bits (549), Expect = 2.6e-52
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 24  TAELYDFDDEKDENKFDFKKIVSENWIEPPKREQKRNYSESEYFKQTMRQGGPTKPKEPR 83
           TAELYDFDDEKDENKFDFKKIVSENWIEPPKRE+KRNYSESEYFKQTMRQGGPTKPKEPR
Sbjct: 721 TAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPR 780

Query: 84  IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEETE 132
           IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEE E
Sbjct: 781 IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPE 828

[Close]

BLAST of Lag0006381 vs. ExPASy Swiss-Prot
Match: Q8RWY3 (ISWI chromatin-remodeling complex ATPase CHR11 OS=Arabidopsis thaliana OX=3702 GN=CHR11 PE=1 SV=4)

HSP 1 Score: 189.9 bits (481), Expect = 2.7e-47
Identity = 93/109 (85.32%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 24  TAELYDFDDE-KDENKFDFKKIVSENWIEPPKREQKRNYSESEYFKQTMRQGGPTKPKEP 83
           +A+ YDFDD+ KDENK DFKKIVS+NW +PPKRE+KRNYSESEYFKQT+RQG P KPKEP
Sbjct: 712 SADFYDFDDDNKDENKLDFKKIVSDNWNDPPKRERKRNYSESEYFKQTLRQGAPAKPKEP 771

Query: 84  RIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEETE 132
           RIPRMPQLHDFQFFN QRL+ELYEKEVRYLMQTHQKNQLKDTIDVEE E
Sbjct: 772 RIPRMPQLHDFQFFNIQRLTELYEKEVRYLMQTHQKNQLKDTIDVEEPE 820

[Close]

BLAST of Lag0006381 vs. ExPASy Swiss-Prot
Match: F4JY24 (ISWI chromatin-remodeling complex ATPase CHR17 OS=Arabidopsis thaliana OX=3702 GN=CHR17 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.1e-44
Identity = 87/109 (79.82%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 24  TAELYDFDDE-KDENKFDFKKIVSENWIEPPKREQKRNYSESEYFKQTMRQGGPTKPKEP 83
           +A+ YDFDD+ KDE+K DFKKIVSENW +PPKRE+KRNYSE EYFKQT+RQG P KPKEP
Sbjct: 717 SADFYDFDDDNKDESKVDFKKIVSENWNDPPKRERKRNYSEVEYFKQTLRQGAPAKPKEP 776

Query: 84  RIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEETE 132
           RIPRMPQLHDFQFFN QRL+ELYEKEVRYLMQ HQK Q+KDTI+V+E E
Sbjct: 777 RIPRMPQLHDFQFFNIQRLTELYEKEVRYLMQAHQKTQMKDTIEVDEPE 825

[Close]

BLAST of Lag0006381 vs. ExPASy Swiss-Prot
Match: Q7G8Y3 (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 173.7 bits (439), Expect = 2.0e-42
Identity = 84/108 (77.78%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 24  TAELYDFDDEKDENKFDFKKIVSENWIEPPKREQKRNYSESEYFKQTMRQGGPTKPKEPR 83
           TAELYDFDD+K+ENK DFKK+VS+NWIEPP+RE+KRNYSESEYFKQ +RQG P KP+EPR
Sbjct: 754 TAELYDFDDDKEENKLDFKKLVSDNWIEPPRRERKRNYSESEYFKQALRQGAPAKPREPR 813

Query: 84  IPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEETE 132
           IPRMP LHDFQFFN QRL+ELYEKEVRYLMQ +QK   KDTID E+ +
Sbjct: 814 IPRMPHLHDFQFFNNQRLNELYEKEVRYLMQANQK---KDTIDGEDED 858

[Close]

BLAST of Lag0006381 vs. ExPASy Swiss-Prot
Match: Q91ZW3 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus OX=10090 GN=Smarca5 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 25  AELYDFDDEKDENKFDFKKIVSENWIEPPKREQKRNYSESEYFKQTMRQGGPTKPKEPRI 84
           + +Y+F+ E    K   +KI    WIEPPKRE+K NY+   YF++ +R   P  PK PR 
Sbjct: 708 SSVYNFEGEDYREK---QKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRP 767

Query: 85  PRMPQLHDFQFFNTQRLSELYEKEVRYLMQT 116
           P+ P + DFQFF   RL EL EKE+ Y  +T
Sbjct: 768 PKQPNVQDFQFF-PPRLFELLEKEILYYRKT 794

[Close]

BLAST of Lag0006381 vs. ExPASy Swiss-Prot
Match: O60264 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens OX=9606 GN=SMARCA5 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-12
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 25  AELYDFDDEKDENKFDFKKIVSENWIEPPKREQKRNYSESEYFKQTMRQGGPTKPKEPRI 84
           + +Y+F+ E    K   +KI    WIEPPKRE+K NY+   YF++ +R   P  PK PR 
Sbjct: 709 SSVYNFEGEDYREK---QKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRP 768

Query: 85  PRMPQLHDFQFFNTQRLSELYEKEVRYLMQT 116
           P+ P + DFQFF   RL EL EKE+ +  +T
Sbjct: 769 PKQPNVQDFQFF-PPRLFELLEKEILFYRKT 795

The following BLAST results are available for this feature:

BLAST of Lag0006381 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458481.1	2.6e-52	98.15	PREDICTED: ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 [Cucumis me...	[more]
XP_022138478.1	2.6e-52	98.15	ISWI chromatin-remodeling complex ATPase CHR11 isoform X2 [Momordica charantia]	[more]
KAA0033470.1	2.6e-52	98.15	ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 [Cucumis melo var. mak...	[more]
XP_022138477.1	2.6e-52	98.15	ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 [Momordica charantia]	[more]
XP_038874770.1	2.6e-52	98.15	ISWI chromatin-remodeling complex ATPase CHR11 isoform X2 [Benincasa hispida]	[more]

BLAST of Lag0006381 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWY3	2.7e-47	85.32	ISWI chromatin-remodeling complex ATPase CHR11 OS=Arabidopsis thaliana OX=3702 G...	[more]
F4JY24	6.1e-44	79.82	ISWI chromatin-remodeling complex ATPase CHR17 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q7G8Y3	2.0e-42	77.78	Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japoni...	[more]
Q91ZW3	1.6e-12	45.05	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
O60264	4.7e-12	43.96	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036306	ISWI, HAND domain superfamily	GENE3D	1.10.1040.30	ISWI, HAND domain	coord: 53..144 e-value: 1.2E-19 score: 73.0
IPR036306	ISWI, HAND domain superfamily	SUPERFAMILY	101224	HAND domain of the nucleosome remodeling ATPase ISWI	coord: 64..131
IPR015194	ISWI, HAND domain	PFAM	PF09110	HAND	coord: 65..116 e-value: 2.2E-10 score: 41.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..83
None	No IPR available	PANTHER	PTHR10799	SNF2/RAD54 HELICASE FAMILY	coord: 24..131
None	No IPR available	PANTHER	PTHR10799:SF985	REMODELING FACTOR, PUTATIVE-RELATED	coord: 24..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006381.1	Lag0006381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016584	nucleosome positioning
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0031491	nucleosome binding