Lag0006372 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006372
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RING-type domain-containing protein
Location	chr6: 41737670 .. 41738813 (-)
RNA-Seq Expression	Lag0006372
Synteny	Lag0006372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCTTCAAGCCTCCGCCGCCCCCCACGGCGGCGACTCGGCGCTGCAGCCGAAGCCAGAGACCAGAGTCCTGTCTCTGCTTCTCAAGGTCACCATCATGATCCTCCTAACCACCCTCTTCTTCGTCTTCCTCGGCCTCGCCACCGCCCTCCTCCTCATCCACCTCTGCGTCGCCAGCGCCCTCCACCGCCGCCGCCGCCGCCATCGCCGCCATTCCCAATTCCCCGATTCCTCATCTGGGTTCTCCCCTCGTGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCACTCGCAAATTGACTGCCCTATTTGCCTCGATGGCTTTAGAAAGGGCCAGTGGTGTAGAAAACTCGGTGGGTGCGGCCATGTTTATCACCGGAAGTGCATCGATTCGTGGTTGGTTAGGGTTTCTGCTTGCCCCCTTTGCCGGAGCTGCGTTCGATTGGATATGGAAGAAGATCATATTGATCGTGTAAGTTCCACGAATTATGAGATTTTGTATGCTCTGTAACTGTAACTCTAGTTTAGTTTCTTTTTCTTTTGGTTTCTTTTCCCTTCTTAGATGTATATATAGTTTAAGCAATGTTTGAAATAAAGCTTTCTTTTAGTTATGTTTTGATATTGTAGTTTTGTTTTGCTGCTGCCACAATGCCTCTGCCTTTTGTTTTGATTTTTGATCATTACTTTTGAGTTGACCAACACGAGGATTGGAGATTTGGACGATATAATGTCTTAATTATTTGAGCTATGAAGTTCATTATCTTGAATTCAATGTAAGGGGGAGTTTTTTTGAAAGTTTAGAGATGGGTAAGGGGAAAGGAGAACAGGGGTTTCAAAGTTTATGGATTTGGAGAGGATATAATGTTCTAGTGTTCATTCAATTGTGTTGATTTTTAGCTGGGTTTATGGATTATTAGATGGAGCAAAAACTTCTTGTTCAAGGACTTGTATGGATGATGATTTGGTGTAAATATAGCATGGTCGGACGGTTGTGTCGAGAATCGTGCAGGTCATTTGAACACTCACAGGATATCGTCAATGTTTTAAAAGACTATTGCGGCTTATGCTTTGAGGCAGACAAAGCTCTAACTTTTAGGCTCGAGACTTACGCCTTCTTTGGACCATAA

mRNA sequence

ATGCCCCTTCAAGCCTCCGCCGCCCCCCACGGCGGCGACTCGGCGCTGCAGCCGAAGCCAGAGACCAGAGTCCTGTCTCTGCTTCTCAAGGTCACCATCATGATCCTCCTAACCACCCTCTTCTTCGTCTTCCTCGGCCTCGCCACCGCCCTCCTCCTCATCCACCTCTGCGTCGCCAGCGCCCTCCACCGCCGCCGCCGCCGCCATCGCCGCCATTCCCAATTCCCCGATTCCTCATCTGGGTTCTCCCCTCGTGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCACTCGCAAATTGACTGCCCTATTTGCCTCGATGGCTTTAGAAAGGGCCAGTGGTGTAGAAAACTCGGTGGGTGCGGCCATGTTTATCACCGGAAGTGCATCGATTCGTGGTTGGTTAGGGTTTCTGCTTGCCCCCTTTGCCGGAGCTGCGTTCGATTGGATATGGAAGAAGATCATATTGATCGTATGGAGCAAAAACTTCTTGTTCAAGGACTTGTATGGATGATGATTTGGTGTAAATATAGCATGGTCGGACGGTTGTGTCGAGAATCGTGCAGGTCATTTGAACACTCACAGGATATCGTCAATGTTTTAAAAGACTATTGCGGCTTATGCTTTGAGGCAGACAAAGCTCTAACTTTTAGGCTCGAGACTTACGCCTTCTTTGGACCATAA

Coding sequence (CDS)

ATGCCCCTTCAAGCCTCCGCCGCCCCCCACGGCGGCGACTCGGCGCTGCAGCCGAAGCCAGAGACCAGAGTCCTGTCTCTGCTTCTCAAGGTCACCATCATGATCCTCCTAACCACCCTCTTCTTCGTCTTCCTCGGCCTCGCCACCGCCCTCCTCCTCATCCACCTCTGCGTCGCCAGCGCCCTCCACCGCCGCCGCCGCCGCCATCGCCGCCATTCCCAATTCCCCGATTCCTCATCTGGGTTCTCCCCTCGTGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCACTCGCAAATTGACTGCCCTATTTGCCTCGATGGCTTTAGAAAGGGCCAGTGGTGTAGAAAACTCGGTGGGTGCGGCCATGTTTATCACCGGAAGTGCATCGATTCGTGGTTGGTTAGGGTTTCTGCTTGCCCCCTTTGCCGGAGCTGCGTTCGATTGGATATGGAAGAAGATCATATTGATCGTATGGAGCAAAAACTTCTTGTTCAAGGACTTGTATGGATGATGATTTGGTGTAAATATAGCATGGTCGGACGGTTGTGTCGAGAATCGTGCAGGTCATTTGAACACTCACAGGATATCGTCAATGTTTTAAAAGACTATTGCGGCTTATGCTTTGAGGCAGACAAAGCTCTAACTTTTAGGCTCGAGACTTACGCCTTCTTTGGACCATAA

Protein sequence

MPLQASAAPHGGDSALQPKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVASALHRRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKGQWCRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCVRLDMEEDHIDRMEQKLLVQGLVWMMIWCKYSMVGRLCRESCRSFEHSQDIVNVLKDYCGLCFEADKALTFRLETYAFFGP

Homology

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BLAST of Lag0006372 vs. NCBI nr
Match: XP_004149098.1 (RING-H2 finger protein ATL56 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 7.7e-70
Identity = 138/165 (83.64%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MPLQASAAPHG---GDSALQPKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA  G         PKPET++LSLLLK+ IMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKG 120
           VASALHRRRR H RHSQ+ DSSSGFS RDLKKLLQFRFSNWVNPHSQIDC ICLDGFRKG
Sbjct: 61  VASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCVRLDMEEDHID 163
           QWCR+LGGCGHVYHRKCIDSWLVRVSACPLCR CVRLDMEE  ID
Sbjct: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEID 165

[Close]

BLAST of Lag0006372 vs. NCBI nr
Match: XP_008452306.1 (PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo] >KAA0048646.1 RING-H2 finger protein ATL56 [Cucumis melo var. makuwa] >TYK10847.1 RING-H2 finger protein ATL56 [Cucumis melo var. makuwa])

HSP 1 Score: 271.6 bits (693), Expect = 6.5e-69
Identity = 137/165 (83.03%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 1   MPLQASAAPHGG---DSALQPKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA  G         PKPET++LSLLLK+ IMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQHSAAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKG 120
           VASALHRRRR H R SQ+ DSSSGFS RDLKKLLQFRFSNWVNPHSQIDC ICLDGFRKG
Sbjct: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCVRLDMEEDHID 163
           QWCR+LGGCGHVYHRKCIDSWLVRVSACPLCR CVRLDMEE  ID
Sbjct: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEID 165

[Close]

BLAST of Lag0006372 vs. NCBI nr
Match: XP_023538017.1 (RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.6 bits (688), Expect = 2.5e-68
Identity = 137/163 (84.05%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MPLQASAAPHGGDSALQPKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVAS 60
           MPLQ S A   GD    PKPE +VLSLLLKV+IMI+LTTLFFVFLGLATALLLI+ CVAS
Sbjct: 1   MPLQDSTAAIAGDPP-PPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVAS 60

Query: 61  ALH-RRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKGQW 120
            LH RRRRRHRR SQF DSSSGFS RDLKKLLQFRFSNWVNPHSQIDCPICL GFRKGQW
Sbjct: 61  VLHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQW 120

Query: 121 CRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCVRLDMEEDHID 163
           CRKLGGCGH+YHRKCIDSWLVRVSACPLCRS VRLDMEE+ +D
Sbjct: 121 CRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMD 162

[Close]

BLAST of Lag0006372 vs. NCBI nr
Match: KAG6586190.1 (RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021021.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.6 bits (688), Expect = 2.5e-68
Identity = 137/163 (84.05%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MPLQASAAPHGGDSALQPKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVAS 60
           MPLQ S A   GD    PKPE +VLSLLLKV+IMI+LTTLFFVFLGLATALLLI+ CVAS
Sbjct: 1   MPLQDSTAALAGDPP-PPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVAS 60

Query: 61  ALH-RRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKGQW 120
            LH RRRRRHRR SQF DSSSGFS RDLKKLLQFRFSNWVNPHSQIDCPICL GFRKGQW
Sbjct: 61  VLHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQW 120

Query: 121 CRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCVRLDMEEDHID 163
           CRKLGGCGH+YHRKCIDSWLVRVSACPLCRS VRLDMEE+ +D
Sbjct: 121 CRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMD 162

[Close]

BLAST of Lag0006372 vs. NCBI nr
Match: XP_022938060.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata])

HSP 1 Score: 269.6 bits (688), Expect = 2.5e-68
Identity = 137/163 (84.05%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MPLQASAAPHGGDSALQPKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVAS 60
           MPLQ S A   GD    PKPE +VLSLLLKV+IMI+LTTLFFVFLGLATALLLI+ CVAS
Sbjct: 1   MPLQDSTAALAGDPP-PPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVAS 60

Query: 61  ALH-RRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKGQW 120
            LH RRRRRHRR SQF DSSSGFS RDLKKLLQFRFSNWVNPHSQIDCPICL GFRKGQW
Sbjct: 61  VLHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQW 120

Query: 121 CRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCVRLDMEEDHID 163
           CRKLGGCGH+YHRKCIDSWLVRVSACPLCRS VRLDMEE+ +D
Sbjct: 121 CRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMD 162

[Close]

BLAST of Lag0006372 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.1e-31
Identity = 75/143 (52.45%), Postives = 98/143 (68.53%), Query Frame = 0


Query: 18  PKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVASALHRRRRRHRRHSQFPD 77
           PKP+TR+LSL L   IM  +  LF V +G+A+ L+L  L   S+LHR  RR RR+ +  +
Sbjct: 23  PKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPLL--LSSLHRHHRRRRRNRR-QE 82

Query: 78  SSSGFSPRDLKKLLQFRFSN-WVNPHSQIDCPICLDGFRKGQWCRKLGGCGHVYHRKCID 137
           SS G S R +KKL QF+FS        + DC +C DGFR+GQWCR L GCGHV+HRKC+D
Sbjct: 83  SSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVD 142

Query: 138 SWLVRVSACPLCRSCVRLDMEED 160
           +WL++ S CP+CR+ VRL  EED
Sbjct: 143 TWLLKASTCPICRARVRL-WEED 161

[Close]

BLAST of Lag0006372 vs. ExPASy Swiss-Prot
Match: Q9M0C3 (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-23
Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 0


Query: 9   PHGGDSALQPKPE------------TRVLS--LLLKVTIMILLTTLFFVFLGLA-TALLL 68
           P+ G  + +P P             T++LS  L+  + I + +T   F+   L  T    
Sbjct: 6   PYDGSISREPSPSPPPPKANTKNLPTKILSNFLIGLIMIPVAITAFIFILTSLGFTFFFA 65

Query: 69  IHLCVASALHRRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDG 128
            +  +      R RRHRRH    + S G SPR +K+L QF++    + +   DC +C+DG
Sbjct: 66  FYWFLQRNYRHRLRRHRRH----EYSDGLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDG 125

Query: 129 FRKGQWCRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCV 153
           FR+GQWCRKL  CGHV+HRKC+D WL++VS CP+CR  V
Sbjct: 126 FRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICRDRV 160

[Close]

BLAST of Lag0006372 vs. ExPASy Swiss-Prot
Match: Q8LBA0 (NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-09
Identity = 26/73 (35.62%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 81  GFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKGQWCRKLGGCGHVYHRKCIDSWLV 140
           G S   L+KL  +  S+ +       C ICL   + G+  R L  C H +H  C+D WL+
Sbjct: 150 GLSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLI 209

Query: 141 RVSACPLCRSCVR 154
           R  +CP+CR  V+
Sbjct: 210 RHGSCPICRQAVK 222

[Close]

BLAST of Lag0006372 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08
Identity = 27/70 (38.57%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 80  SGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKGQWCRKLGGCGHVYHRKCIDSWL 139
           +G   R+LKK     + +     +  +C ICL  F  G+  R L  C H +H  CID+WL
Sbjct: 78  AGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWL 137

Query: 140 VRVSACPLCR 150
           V  S+CP CR
Sbjct: 138 VSHSSCPNCR 147

[Close]

BLAST of Lag0006372 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-08
Identity = 28/75 (37.33%), Postives = 38/75 (50.67%), Query Frame = 0


Query: 79  SSGFSPRDLKKLLQFRFSNWVN-PHSQIDCPICLDGFRKGQWCRKLGGCGHVYHRKCIDS 138
           + G   + LK L    +S  +N P    +C ICL  F  G+  R L  C H +H +CID 
Sbjct: 101 NKGIKKKALKMLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDK 160

Query: 139 WLVRVSACPLCRSCV 153
           WL +   CP CR C+
Sbjct: 161 WLTQHMTCPKCRHCL 175

[Close]

BLAST of Lag0006372 vs. ExPASy TrEMBL
Match: A0A0A0LJ61 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.7e-70
Identity = 138/165 (83.64%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MPLQASAAPHG---GDSALQPKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA  G         PKPET++LSLLLK+ IMILLTTLFFVFLGLATALLLIHLC
Sbjct: 56  MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 115

Query: 61  VASALHRRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKG 120
           VASALHRRRR H RHSQ+ DSSSGFS RDLKKLLQFRFSNWVNPHSQIDC ICLDGFRKG
Sbjct: 116 VASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 175

Query: 121 QWCRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCVRLDMEEDHID 163
           QWCR+LGGCGHVYHRKCIDSWLVRVSACPLCR CVRLDMEE  ID
Sbjct: 176 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEID 220

[Close]

BLAST of Lag0006372 vs. ExPASy TrEMBL
Match: A0A5D3CFV1 (RING-H2 finger protein ATL56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00160 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 3.1e-69
Identity = 137/165 (83.03%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 1   MPLQASAAPHGG---DSALQPKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA  G         PKPET++LSLLLK+ IMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQHSAAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKG 120
           VASALHRRRR H R SQ+ DSSSGFS RDLKKLLQFRFSNWVNPHSQIDC ICLDGFRKG
Sbjct: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCVRLDMEEDHID 163
           QWCR+LGGCGHVYHRKCIDSWLVRVSACPLCR CVRLDMEE  ID
Sbjct: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEID 165

[Close]

BLAST of Lag0006372 vs. ExPASy TrEMBL
Match: A0A1S3BTK8 (RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 3.1e-69
Identity = 137/165 (83.03%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 1   MPLQASAAPHGG---DSALQPKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA  G         PKPET++LSLLLK+ IMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQHSAAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKG 120
           VASALHRRRR H R SQ+ DSSSGFS RDLKKLLQFRFSNWVNPHSQIDC ICLDGFRKG
Sbjct: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCVRLDMEEDHID 163
           QWCR+LGGCGHVYHRKCIDSWLVRVSACPLCR CVRLDMEE  ID
Sbjct: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEID 165

[Close]

BLAST of Lag0006372 vs. ExPASy TrEMBL
Match: A0A6J1FIL3 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111444262 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.2e-68
Identity = 137/163 (84.05%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MPLQASAAPHGGDSALQPKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVAS 60
           MPLQ S A   GD    PKPE +VLSLLLKV+IMI+LTTLFFVFLGLATALLLI+ CVAS
Sbjct: 1   MPLQDSTAALAGDPP-PPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVAS 60

Query: 61  ALH-RRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKGQW 120
            LH RRRRRHRR SQF DSSSGFS RDLKKLLQFRFSNWVNPHSQIDCPICL GFRKGQW
Sbjct: 61  VLHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQW 120

Query: 121 CRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCVRLDMEEDHID 163
           CRKLGGCGH+YHRKCIDSWLVRVSACPLCRS VRLDMEE+ +D
Sbjct: 121 CRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMD 162

[Close]

BLAST of Lag0006372 vs. ExPASy TrEMBL
Match: A0A6J1HSE6 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111465699 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.0e-68
Identity = 137/163 (84.05%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MPLQASAAPHGGDSALQPKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVAS 60
           MPLQ S A + GD    PKPE +VLSLLLKV+IMI+LTTLFFVFLGLATALLLI+ CVAS
Sbjct: 1   MPLQDSTAANAGDPP-PPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVAS 60

Query: 61  ALH-RRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKGQW 120
            LH RRRRRHR  SQF DSSSGFS RDLKKLLQFRFSNWVNPHSQIDCPICL GFRKGQW
Sbjct: 61  VLHRRRRRRHRHRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQW 120

Query: 121 CRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCVRLDMEEDHID 163
           CRKLGGCGHVYHRKCIDSWLVRVSACPLCRS VRLDMEE+ +D
Sbjct: 121 CRKLGGCGHVYHRKCIDSWLVRVSACPLCRSPVRLDMEENQMD 162

[Close]

BLAST of Lag0006372 vs. TAIR 10
Match: AT2G18670.1 (RING/U-box superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 8.0e-33
Identity = 75/143 (52.45%), Postives = 98/143 (68.53%), Query Frame = 0


Query: 18  PKPETRVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVASALHRRRRRHRRHSQFPD 77
           PKP+TR+LSL L   IM  +  LF V +G+A+ L+L  L   S+LHR  RR RR+ +  +
Sbjct: 23  PKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPLL--LSSLHRHHRRRRRNRR-QE 82

Query: 78  SSSGFSPRDLKKLLQFRFSN-WVNPHSQIDCPICLDGFRKGQWCRKLGGCGHVYHRKCID 137
           SS G S R +KKL QF+FS        + DC +C DGFR+GQWCR L GCGHV+HRKC+D
Sbjct: 83  SSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVD 142

Query: 138 SWLVRVSACPLCRSCVRLDMEED 160
           +WL++ S CP+CR+ VRL  EED
Sbjct: 143 TWLLKASTCPICRARVRL-WEED 161

[Close]

BLAST of Lag0006372 vs. TAIR 10
Match: AT4G30370.1 (RING/U-box superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 8.0e-25
Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 0


Query: 9   PHGGDSALQPKPE------------TRVLS--LLLKVTIMILLTTLFFVFLGLA-TALLL 68
           P+ G  + +P P             T++LS  L+  + I + +T   F+   L  T    
Sbjct: 6   PYDGSISREPSPSPPPPKANTKNLPTKILSNFLIGLIMIPVAITAFIFILTSLGFTFFFA 65

Query: 69  IHLCVASALHRRRRRHRRHSQFPDSSSGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDG 128
            +  +      R RRHRRH    + S G SPR +K+L QF++    + +   DC +C+DG
Sbjct: 66  FYWFLQRNYRHRLRRHRRH----EYSDGLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDG 125

Query: 129 FRKGQWCRKLGGCGHVYHRKCIDSWLVRVSACPLCRSCV 153
           FR+GQWCRKL  CGHV+HRKC+D WL++VS CP+CR  V
Sbjct: 126 FRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICRDRV 160

[Close]

BLAST of Lag0006372 vs. TAIR 10
Match: AT3G20395.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-10
Identity = 24/55 (43.64%), Postives = 32/55 (58.18%), Query Frame = 0


Query: 95  FSNWVNPHSQIDCPICLDGFRKGQWCRKLGGCGHVYHRKCIDSWLVRVSACPLCR 150
           F N     ++  C ICL  + +G+  RKL  CGH +H  CID WL+R   CP+CR
Sbjct: 159 FYNRSEHQTKSSCSICLQDWEEGEVGRKLARCGHTFHMNCIDEWLLRQETCPICR 213

[Close]

BLAST of Lag0006372 vs. TAIR 10
Match: AT1G74410.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-10
Identity = 26/73 (35.62%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 81  GFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKGQWCRKLGGCGHVYHRKCIDSWLV 140
           G S   L+KL  +  S+ +       C ICL   + G+  R L  C H +H  C+D WL+
Sbjct: 150 GLSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLI 209

Query: 141 RVSACPLCRSCVR 154
           R  +CP+CR  V+
Sbjct: 210 RHGSCPICRQAVK 222

[Close]

BLAST of Lag0006372 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 9.5e-10
Identity = 27/70 (38.57%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 80  SGFSPRDLKKLLQFRFSNWVNPHSQIDCPICLDGFRKGQWCRKLGGCGHVYHRKCIDSWL 139
           +G   R+LKK     + +     +  +C ICL  F  G+  R L  C H +H  CID+WL
Sbjct: 78  AGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWL 137

Query: 140 VRVSACPLCR 150
           V  S+CP CR
Sbjct: 138 VSHSSCPNCR 147

The following BLAST results are available for this feature:

BLAST of Lag0006372 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149098.1	7.7e-70	83.64	RING-H2 finger protein ATL56 [Cucumis sativus]	[more]
XP_008452306.1	6.5e-69	83.03	PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo] >KAA0048646.1 RING-H2 fin...	[more]
XP_023538017.1	2.5e-68	84.05	RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]	[more]
KAG6586190.1	2.5e-68	84.05	RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022938060.1	2.5e-68	84.05	RING-H2 finger protein ATL56-like [Cucurbita moschata]	[more]

BLAST of Lag0006372 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZV51	1.1e-31	52.45	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]
Q9M0C3	1.1e-23	38.36	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]
Q8LBA0	4.6e-09	35.62	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV...	[more]
Q9LZV8	1.3e-08	38.57	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q9LS99	2.3e-08	37.33	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]

BLAST of Lag0006372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ61	3.7e-70	83.64	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 P...	[more]
A0A5D3CFV1	3.1e-69	83.03	RING-H2 finger protein ATL56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BTK8	3.1e-69	83.03	RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1	[more]
A0A6J1FIL3	1.2e-68	84.05	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111444262 ...	[more]
A0A6J1HSE6	2.0e-68	84.05	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111465699 PE...	[more]

BLAST of Lag0006372 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18670.1	8.0e-33	52.45	RING/U-box superfamily protein	[more]
AT4G30370.1	8.0e-25	38.36	RING/U-box superfamily protein	[more]
AT3G20395.1	1.9e-10	43.64	RING/U-box superfamily protein	[more]
AT1G74410.1	3.3e-10	35.62	RING/U-box superfamily protein	[more]
AT5G01880.1	9.5e-10	38.57	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 3.7E-7 score: 39.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..149 e-value: 2.2E-12 score: 47.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 12.341748
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 83..157 e-value: 5.1E-18 score: 66.1
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 12..163
None	No IPR available	PANTHER	PTHR46539:SF9	RING-H2 FINGER PROTEIN ATL56	coord: 12..163
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 87..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006372.1	Lag0006372.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane