Lag0006360 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006360
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein UPSTREAM OF FLC
Location	chr6: 41596827 .. 41597646 (+)
RNA-Seq Expression	Lag0006360
Synteny	Lag0006360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTCACGTTGCCCTCCTTTCTGTTTTTAAAAGTGAAACCCACGCCGCCTCTCCATCCATCTCAATCGCTCGTGTTTGGCCGGCAGCAAGGAAGCCCACATCGCCCTCATTTCCATTTTTCTTCTTCTCCAGTCGAGATCCCAACCCACGTCGGTCTGAAACCCATGCCCACTGCTTTTCGTTCTTCTCTTCTCCTCTATGCGACAACAACCCTCACCCATGACCCCTTTTGTTTTAGATCTGAAACGAAATCGAAACCCAGATCTGGGTTGGGTTTCGTTTCAAATCTGAAACTCCCAATTAGACTGCTTTCTTTTTCATTTGTTGCAGAGCCCTTAGTTGTGTTTATGACTGCCCTCCATCTGTTTGATTCTACGTCCCAAAGAGAAGGAAATTTCAAGAGTAACCCAGTTGCCAATTTAACTTTGACATCCCCAAATGAGCTTTTTTAATCCATTTCTTTTCCTCAATCTGTTTGTTTGTGCTGCTTCCTTTGTATGGCTGGTTATAAATATCCTATATACTACCAATGTCATTGCCATTATCATTTTTCACAAGTTGTGAATGATTGGATAATGGAAGAGAATGTTCAAAATCTCTGAAATGAAACGAATGTATTTGAATTTCAGGGGTTCACAGCTGCAACTGTCGGAGAAGGAGATCGACGTAGCGCGAGCAAAATGCATACCAAGAAAGCACAAGGCAACAACAGCCCAACCAACGAAGAAGGACACCAACAACATCGGCGACGACCCCTCTCTCACAACCAGCAATAGCCAATATGGAAGCAAAAGACTCGACACAGAGCAACAATGA

mRNA sequence

ATGAAACTCACGTTGCCCTCCTTTCTGTTTTTAAAAGTGAAACCCACGCCGCCTCTCCATCCATCTCAATCGCTCGTGTTTGGCCGGCAGCAAGGAAGCCCACATCGCCCTCATTTCCATTTTTCTTCTTCTCCAGTCGAGATCCCAACCCACGTCGGTCTGAAACCCATGCCCACTGCTTTTCGTTCTTCTCTTCTCCTCTATGCGACAACAACCCTCACCCATGACCCCTTTTGTTTTAGATCTGAAACGAAATCGAAACCCAGATCTGGGTTGGGTTTCGTTTCAAATCTGAAACTCCCAATTAGACTGCTTTCTTTTTCATTTGTTGCAGAGCCCTTAGTTGTGTTTATGACTGCCCTCCATCTGGGTTCACAGCTGCAACTGTCGGAGAAGGAGATCGACGTAGCGCGAGCAAAATGCATACCAAGAAAGCACAAGGCAACAACAGCCCAACCAACGAAGAAGGACACCAACAACATCGGCGACGACCCCTCTCTCACAACCAGCAATAGCCAATATGGAAGCAAAAGACTCGACACAGAGCAACAATGA

Coding sequence (CDS)

ATGAAACTCACGTTGCCCTCCTTTCTGTTTTTAAAAGTGAAACCCACGCCGCCTCTCCATCCATCTCAATCGCTCGTGTTTGGCCGGCAGCAAGGAAGCCCACATCGCCCTCATTTCCATTTTTCTTCTTCTCCAGTCGAGATCCCAACCCACGTCGGTCTGAAACCCATGCCCACTGCTTTTCGTTCTTCTCTTCTCCTCTATGCGACAACAACCCTCACCCATGACCCCTTTTGTTTTAGATCTGAAACGAAATCGAAACCCAGATCTGGGTTGGGTTTCGTTTCAAATCTGAAACTCCCAATTAGACTGCTTTCTTTTTCATTTGTTGCAGAGCCCTTAGTTGTGTTTATGACTGCCCTCCATCTGGGTTCACAGCTGCAACTGTCGGAGAAGGAGATCGACGTAGCGCGAGCAAAATGCATACCAAGAAAGCACAAGGCAACAACAGCCCAACCAACGAAGAAGGACACCAACAACATCGGCGACGACCCCTCTCTCACAACCAGCAATAGCCAATATGGAAGCAAAAGACTCGACACAGAGCAACAATGA

Protein sequence

MKLTLPSFLFLKVKPTPPLHPSQSLVFGRQQGSPHRPHFHFSSSPVEIPTHVGLKPMPTAFRSSLLLYATTTLTHDPFCFRSETKSKPRSGLGFVSNLKLPIRLLSFSFVAEPLVVFMTALHLGSQLQLSEKEIDVARAKCIPRKHKATTAQPTKKDTNNIGDDPSLTTSNSQYGSKRLDTEQQ

Homology

[Close]

BLAST of Lag0006360 vs. NCBI nr
Match: KAE8653231.1 (hypothetical protein Csa_019901 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 8.9e-13
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 124 GSQLQLSEKEIDVARAKCIPRKHKATTAQPTKKDTNNIGDDPSLTTSNSQYGSKRLDTEQ 183
           GSQL++SEKEI+ A AKCIPRKHK+  A P KK  NNI D PS+T SNSQ+GSKR+D EQ
Sbjct: 452 GSQLEMSEKEIEAALAKCIPRKHKSGVANPIKKGINNISDGPSITASNSQHGSKRVDIEQ 511

Query: 184 Q 185
           Q
Sbjct: 512 Q 512

[Close]

BLAST of Lag0006360 vs. NCBI nr
Match: XP_004149057.2 (protein UPSTREAM OF FLC [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 8.9e-13
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 124 GSQLQLSEKEIDVARAKCIPRKHKATTAQPTKKDTNNIGDDPSLTTSNSQYGSKRLDTEQ 183
           GSQL++SEKEI+ A AKCIPRKHK+  A P KK  NNI D PS+T SNSQ+GSKR+D EQ
Sbjct: 380 GSQLEMSEKEIEAALAKCIPRKHKSGVANPIKKGINNISDGPSITASNSQHGSKRVDIEQ 439

Query: 184 Q 185
           Q
Sbjct: 440 Q 440

[Close]

BLAST of Lag0006360 vs. NCBI nr
Match: XP_038893572.1 (protein UPSTREAM OF FLC [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 9.9e-12
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 124 GSQLQLSEKEIDVARAKCIPRKHKATTAQPTKKDTNNIGDDPSLTTSNSQYGSKRLDTEQ 183
           G QLQ+SEKE+D ARAKCIPRK K TT   TK+  NNI D PS+TTSNSQ+GSKRLD E+
Sbjct: 381 GLQLQMSEKELDAARAKCIPRKQKTTT---TKETNNNISDGPSITTSNSQHGSKRLDIER 438

Query: 184 Q 185
           Q
Sbjct: 441 Q 438

[Close]

BLAST of Lag0006360 vs. NCBI nr
Match: XP_008457538.1 (PREDICTED: protein UPSTREAM OF FLC [Cucumis melo] >KAA0033907.1 protein UPSTREAM OF FLC [Cucumis melo var. makuwa] >TYK01289.1 protein UPSTREAM OF FLC [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-10
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 124 GSQLQLSEKEIDVARAKCIPRKHKATTAQPTKKDTNNIGDDPSLTTSNSQYGSKRLDTEQ 183
           GSQL++SEKEI+VARAKCIPRKHK+  A P KK+     D PS+T SNSQ+GSKR+D EQ
Sbjct: 380 GSQLEMSEKEIEVARAKCIPRKHKSGIANPIKKEI----DGPSITASNSQHGSKRVDIEQ 436

Query: 184 Q 185
           Q
Sbjct: 440 Q 436

[Close]

BLAST of Lag0006360 vs. NCBI nr
Match: XP_023519054.1 (protein UPSTREAM OF FLC-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-10
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 125 SQLQLSEKEID-VARAKCIPRKHKATTAQPTKKDTNNIGDDPSLTTSNSQYGSKRL 180
           SQLQ+SEKEID  ARAKCIPRKH+ ++ Q TKK+TNNI D PS+TTSN+Q+GSKRL
Sbjct: 389 SQLQMSEKEIDAAARAKCIPRKHR-SSGQATKKETNNITDGPSITTSNTQHGSKRL 443

The following BLAST results are available for this feature:

BLAST of Lag0006360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653231.1	8.9e-13	68.85	hypothetical protein Csa_019901 [Cucumis sativus]	[more]
XP_004149057.2	8.9e-13	68.85	protein UPSTREAM OF FLC [Cucumis sativus]	[more]
XP_038893572.1	9.9e-12	70.49	protein UPSTREAM OF FLC [Benincasa hispida]	[more]
XP_008457538.1	1.1e-10	67.21	PREDICTED: protein UPSTREAM OF FLC [Cucumis melo] >KAA0033907.1 protein UPSTREAM...	[more]
XP_023519054.1	4.1e-10	73.21	protein UPSTREAM OF FLC-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0006360 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006360.1	Lag0006360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051258	protein polymerization
biological_process	GO:0051302	regulation of cell division
biological_process	GO:2000067	regulation of root morphogenesis
biological_process	GO:0090708	specification of plant organ axis polarity
cellular_component	GO:0031234	extrinsic component of cytoplasmic side of plasma membrane