Lag0006305 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006305
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionChlorophyll A-B binding protein
Locationchr6: 40925473 .. 40929233 (+)
RNA-Seq ExpressionLag0006305
SyntenyLag0006305
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACTGCGCTGATTCTCCCCATCAAAGGACCAAACCTTCCGTCTTCCCAATACCTCTCTTTCCGCCATAGCCATCCTTCTGCAACTCTCTCCAGGTAATTTCACCTTCTTCCTCAAATACCCATTTCTCCAATCGCTCTAATTTGTAGGTTTTACTTACTTTTATCTCATGTGATTCTATTAGTATGATGGGATGTTCTGAGATACAGAGTGATGCAATTGACTGTTTTCTTGCGCTGGTCATCGGTTTCTCTTCTTGTCTTTCTTCTTTTTCAACGATGATTTTCTTTGTTAAATTGGGGCTCTGTGTCTAAACTTCGTATGTTGTAGAGTTACGAGCTACAGAGTGATATATAAAAGCTTCTCTTTCCCTCTTTTGGATTGATTAGAGTTTGAACTGCTCTAAGATGTCTTTGAAATTTTGTGTTCCATGGTCTGATTAATAGTTAAGCCATTTAGATTTTCTTCATTCTGATTTAGTTCGTCATGCTTTGAGAGGTTTGGTGCTAATGCCTAAGCTTCTATATTATATAGTATTTGCAATCTAATATGTCTGATTGTGAAGTTCTCTTTTTATTAATCGGGTGATGAAGCGAGCTGCGACTTTGCCCGGATGGTTTGGAGTTTTTTTTTTTTGGAGAAGCGTATGCCTTTCAATTTGCCAGGCATAGAGGTTACAGAGATGACTGATGAGTTACTTCTCTATTTGCCGTTTTGAGAGAATGAAAGGTTTTTGTGGCAAGCGGGTATATGTTGGGGGAGAGGAATAATAGGACCCTTTAGAGGGGTTGATATTTGTTAGTTTCTATGTTTCTTTTGAGCGTTGATGACAACTTTCCTGTAATTACTTTTTAGGTCTCATTTTACTTGATTCAGCCATTTTCTTTAGTTTGGTTCTCTTTTTATAGGCTTGGTTTTTTTGGATACTCTTGTATTTTTTCATTTTTTTTTTCTGAATGAGAGTTTGATTCTTTATAAAAGAAAAAATAACTAGGTGATGTGATGGGGCTTCACTCCTTGCCTCTAAGACTAGCTCCAGCCAAAAACAAGGATTTTTAGTCATTAAGTTTTCATACCAGGGAGTTGAACCCTAAACTTCGGAGGGTATCTCTAAACATTTCCAGAAACTACTAATTATTGTTGCGCTAAACATGTTTGAAACATGCCCGCTTGTTACAACGTTTTCTCTTCAATCTTGATCTACAAGAGATACTAAAACTTAGGTGGTTGTTCCACTTTTATCAGAAAGAACATGACCTCATTAAATTTGCAAATAGGATCAAATAAGAATTCTAGTCACCAAAACACCTATATAAAAGAACTAAATGAGTGTTAAAAACCAGTACAGCTAGCTTGGTCGTCTCCTATTCTGGGCCTTCTTCATAGCTGTGCCTTACTGTAACCCTTTCATTATTCATTTATTTTTTTATACCTCTCTTTGCCCTTTGTATATTCCTTATGTGAAAGGATCCCTTTTGTTCCCTAGTTGGTGGTTATGAATACAAAGCATAATAAAGAAGGCTCTCCAGAGTTTTGAATTGAACTCACAAATGTTCTACACTTACCTTGGAAAAAAAGATGAGGATACCCCAGCGTTTTCAGGTACAACCCAAATTGGCAAAATCCAAATATAAGGAACTCCCCTTAAAATTTTATAATAGCAAAGACCAATATAGCCATGTCTCCAAAAATATGTCTATGAAATTTTAACTAAAATGTCCCAAATTATAGCCTAATAGCTGAATTGTATAGATTTTTTGCTCTTCCCAGTTAGTTGATGACTAGCAAAAAGCTTAAATAGTTAGATCCGAGTTGTGCCTGATATTGTAGTCATAATTTCGGTCATGGGAAATGTTAGAACTCTATTTTTTGAAGTGTCGTTTAACAAATAGTTAGAAGTCGAGACCTACAAAGGAACTGAAACGATGTTCAATGAAGTTGTTTAGTTTATTTTCCATCTTGATCGTTGGGTATTCTTTTTAATCACGAAACAGTAATTCATCCATGCTAATTGCTGCATCATTTTTGATAGTTCCTTTCCCTTCCAGGTGGGGTTGGAGTAGGGACCAAGTTGCAGGCAAAAGTACACACAGAACGAGGGGTCAAGCATTTCGAATCTTGGCTAACCCTAATGTACGCTTCAACTCAAGGCTTCTACATGTTTAATGGCAATATATTTGGTTTGAATATGGTCAAAGATTTTGTAGGTATGTCATTAGAAATTAATTAGTGGGTGCTTTATAGCAACAAACTGTCTACTTCCTAGATTCATCCATAGAAATCTACCCTTTTCCCACTCGGATTTGAATAGAATGATCAGCATCTCTTATGATTAACATGAAATTTGAAACATGAAACTTGAAGTTATCTGTCTGGTTCCTTACATTTTAAGTGCATTGACGTTTGATATAGTGCTGTTCAGTTTCTTGTTTATCCTATGCTACTAAATTTTTCTACTTTGGAGAATCTGTGATTGATTGCTTTTTTCTAACTTCTGGATCATTTTTCGTCAAGCTGCATTGTATTCTTCATTTCATTCATGTAATCTAATAAAGCTGGATAGTATAGTAAGTAGTAACCCCTTCATTATAATTAACTTGAATGGTTTTCTTCTTGTTCTCTCAATAAAAGTCATTTTCTAAGTTGTTTATGGGATTTTGTTCTGCAACAAACACATATCGTGTAAATTATTTAGGTCTCTAGTGGGAAAGGTGGCTTAATTAAGGAGGTTATTATGGTCGATCCTTTGGAAGCCAAACGTATGGCTGCGAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGGTAAATGAATTGACCATCATATGTGAAACTTGTTTATAAACCATATGGATAATTTCCCCCAAGTTCTTTTTGGAGAAGAGAGAATGACTATGCAAATAATGTTGTGAAATGTGAATGCAGAGAAGACGTCAAATAGAAGCGATAAATGGAGCATGGGCAATGATTGGTCTCACGGCAGGGCTCGTCATGGAAGGTCAAACTGGAAAAGGCATTCTAGCACAGGTGAAAAGTTATTTTCTTTTATGTTTGTGGCATTTATTTAACTGCTCTGATGTTTAGATAGGTTATTAACTACCAAATTTATAAGGTTATAATGTAGTCACCATTTTTCATGAGTGAACATGGAGGTGAAAGCTTCATCATAGCCATAGGTTGAAAGGTTGGACAAAAAATGACCAAGTTTATAGCTTCTCAACTTTGACCAGTACCTCTTGTGTCTTTGAGTTTTAATCTCTCAAAACTATGTAGGACCAAATATTCTCAAACTTCACCTCTTTCTCTTTCTGTTTGTTTTGAAATTTTAGAAATTAAGCTGCTAGCGATTTCTTTGTTCTAATTTATTTTTTTAAAAAAATGTCTTAAGATCCTAGCTGAATCTTAAAGGAGAGTAGTTATCATTTGGCTAAGCTTTCAAAAAAGTTTTCAAAGAGTGAAAAAATAAAAACAAAATAGTTGTTAGTAAACAAACTTAATTTCTACAGATGAGGATACTATGAATAGAATGGTACAGGACCCTTAAATATAGACCCTTAAATATAGACATGAGACGACTAACATGAACATACCTCAAAAGTTAAGGAGTGATGTTGCTTTCTCCGAAAAGTGTTGTACAATGTACATTGGATTACAACTATATTTTCTTTAACGTCTTACACAACGTTTTTCCTCATTTATTTTCCAGTTGGCTGGCTACTTTGGTGCCGTTGTCGACTTCTTTGTACAATAG

mRNA sequence

ATGGCTTCCACTGCGCTGATTCTCCCCATCAAAGGACCAAACCTTCCGTCTTCCCAATACCTCTCTTTCCGCCATAGCCATCCTTCTGCAACTCTCTCCAGGTGGGGTTGGAGTAGGGACCAAGTTGCAGGCAAAAGTACACACAGAACGAGGGGTCAAGCATTTCGAATCTTGGCTAACCCTAATGTCTCTAGTGGGAAAGGTGGCTTAATTAAGGAGGTTATTATGGTCGATCCTTTGGAAGCCAAACGTATGGCTGCGAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGAGAAGACGTCAAATAGAAGCGATAAATGGAGCATGGGCAATGATTGGTCTCACGGCAGGGCTCGTCATGGAAGGTCAAACTGGAAAAGGCATTCTAGCACAGTTGGCTGGCTACTTTGGTGCCGTTGTCGACTTCTTTGTACAATAG

Coding sequence (CDS)

ATGGCTTCCACTGCGCTGATTCTCCCCATCAAAGGACCAAACCTTCCGTCTTCCCAATACCTCTCTTTCCGCCATAGCCATCCTTCTGCAACTCTCTCCAGGTGGGGTTGGAGTAGGGACCAAGTTGCAGGCAAAAGTACACACAGAACGAGGGGTCAAGCATTTCGAATCTTGGCTAACCCTAATGTCTCTAGTGGGAAAGGTGGCTTAATTAAGGAGGTTATTATGGTCGATCCTTTGGAAGCCAAACGTATGGCTGCGAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGAGAAGACGTCAAATAGAAGCGATAAATGGAGCATGGGCAATGATTGGTCTCACGGCAGGGCTCGTCATGGAAGGTCAAACTGGAAAAGGCATTCTAGCACAGTTGGCTGGCTACTTTGGTGCCGTTGTCGACTTCTTTGTACAATAG

Protein sequence

MASTALILPIKGPNLPSSQYLSFRHSHPSATLSRWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKGGLIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVMEGQTGKGILAQLAGYFGAVVDFFVQ
Homology
[Close]
BLAST of Lag0006305 vs. NCBI nr
Match: XP_022969695.1 (uncharacterized protein LOC111468645 isoform X1 [Cucurbita maxima])

HSP 1 Score: 240.4 bits (612), Expect = 1.0e-59
Identity = 125/148 (84.46%), Postives = 133/148 (89.86%), Query Frame = 0 

Query: 1   MASTALILPIKGPNLPSSQYLSFRHSHPSATLSRWGWSRDQVAGKSTHRTRGQAFRILAN 60
           MASTALILPI G N  SSQ LSFRH+H SAT SRWGWSRD+  G STHRTRGQAFRILAN
Sbjct: 1   MASTALILPIHGGNRTSSQCLSFRHTHSSATFSRWGWSRDRDVGNSTHRTRGQAFRILAN 60

Query: 61  PNVSSGKGGLIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 120
           PNVS GK  LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG
Sbjct: 61  PNVSPGKDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 120

Query: 121 LVMEGQTGKGILAQLAGYFGAVVDFFVQ 149
           L++EGQTGKGILAQLAGY  AVV+FFV+
Sbjct: 121 LIVEGQTGKGILAQLAGYLAAVVNFFVR 148

[Close]
BLAST of Lag0006305 vs. NCBI nr
Match: XP_023538319.1 (uncharacterized protein LOC111799137 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 8.6e-59
Identity = 124/148 (83.78%), Postives = 132/148 (89.19%), Query Frame = 0 

Query: 1   MASTALILPIKGPNLPSSQYLSFRHSHPSATLSRWGWSRDQVAGKSTHRTRGQAFRILAN 60
           MASTALILPI G N      LSFRH+HPSAT SRWGW+RDQ  GKSTHRTRGQAFRILAN
Sbjct: 1   MASTALILPIHGGN------LSFRHTHPSATFSRWGWNRDQDVGKSTHRTRGQAFRILAN 60

Query: 61  PNVSSGKGGLIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 120
           PNVS GK  LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG
Sbjct: 61  PNVSPGKDNLIKQVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 120

Query: 121 LVMEGQTGKGILAQLAGYFGAVVDFFVQ 149
           L++EGQTGKGILAQLAGY  AVV+FFV+
Sbjct: 121 LIVEGQTGKGILAQLAGYLAAVVNFFVR 142

[Close]
BLAST of Lag0006305 vs. NCBI nr
Match: XP_022937783.1 (uncharacterized protein LOC111444076 isoform X1 [Cucurbita moschata] >XP_022937784.1 uncharacterized protein LOC111444076 isoform X1 [Cucurbita moschata] >KAG6586074.1 hypothetical protein SDJN03_18807, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020898.1 hypothetical protein SDJN02_17586 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.5 bits (602), Expect = 1.5e-58
Identity = 124/148 (83.78%), Postives = 132/148 (89.19%), Query Frame = 0 

Query: 1   MASTALILPIKGPNLPSSQYLSFRHSHPSATLSRWGWSRDQVAGKSTHRTRGQAFRILAN 60
           MASTALILPI G N      LSFRH+HPSAT SRWGW+RDQ  GKSTHRTRGQAFRILAN
Sbjct: 1   MASTALILPIHGGN------LSFRHTHPSATFSRWGWNRDQDVGKSTHRTRGQAFRILAN 60

Query: 61  PNVSSGKGGLIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 120
           PNVS GK  LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG
Sbjct: 61  PNVSPGKDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 120

Query: 121 LVMEGQTGKGILAQLAGYFGAVVDFFVQ 149
           L++EGQTGKGILAQLAGY  AVV+FFV+
Sbjct: 121 LIVEGQTGKGILAQLAGYLAAVVNFFVR 142

[Close]
BLAST of Lag0006305 vs. NCBI nr
Match: XP_038889814.1 (uncharacterized protein LOC120079625 [Benincasa hispida])

HSP 1 Score: 229.9 bits (585), Expect = 1.4e-56
Identity = 120/147 (81.63%), Postives = 131/147 (89.12%), Query Frame = 0 

Query: 1   MASTALILPIKGPNLPSSQYLSFRHSHPSATLSRWGWSRDQVAGKSTHRTRGQAFRILAN 60
           MAST+LILPIKG NLP SQYLSFRH+HPSAT SR GWSRDQ  G+STHRTRGQAF+I   
Sbjct: 1   MASTSLILPIKGGNLPPSQYLSFRHTHPSATFSRSGWSRDQDVGRSTHRTRGQAFQI--- 60

Query: 61  PNVSSGKGGLIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 120
            NVS GK  LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKR+RQIEAINGAWAMIGLTAG
Sbjct: 61  SNVSPGKDDLIKQVIMVDPLEAKRIAAKEMEKIKAKEKFKRKRQIEAINGAWAMIGLTAG 120

Query: 121 LVMEGQTGKGILAQLAGYFGAVVDFFV 148
           LV+EGQTGKGILAQL GYF  V++FF+
Sbjct: 121 LVIEGQTGKGILAQLGGYFSTVINFFI 144

[Close]
BLAST of Lag0006305 vs. NCBI nr
Match: XP_008451793.1 (PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo] >XP_008451800.1 PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo] >XP_008451808.1 PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 4.0e-56
Identity = 120/147 (81.63%), Postives = 129/147 (87.76%), Query Frame = 0 

Query: 2   ASTALILPIKGPNLPSSQYLSFRHSHPSATLSRWGWSRDQVAGKSTHRTRGQAFRILANP 61
           AS +LILPI G NLP SQYLSFRHSHPSAT SR GWSRDQ  G+STHRTRGQAFRI    
Sbjct: 25  ASASLILPINGGNLPPSQYLSFRHSHPSATFSRLGWSRDQDVGRSTHRTRGQAFRI---S 84

Query: 62  NVSSGKGGLIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL 121
           NVS  K GLIK+VIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL
Sbjct: 85  NVSPAKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL 144

Query: 122 VMEGQTGKGILAQLAGYFGAVVDFFVQ 149
           V+EGQTGKGILAQLA YF  +++FF++
Sbjct: 145 VIEGQTGKGILAQLADYFSILINFFIR 168

The following BLAST results are available for this feature:
BLAST of Lag0006305 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022969695.11.0e-5984.46uncharacterized protein LOC111468645 isoform X1 [Cucurbita maxima][more]
XP_023538319.18.6e-5983.78uncharacterized protein LOC111799137 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022937783.11.5e-5883.78uncharacterized protein LOC111444076 isoform X1 [Cucurbita moschata] >XP_0229377... [more]
XP_038889814.11.4e-5681.63uncharacterized protein LOC120079625 [Benincasa hispida][more]
XP_008451793.14.0e-5681.63PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo] >XP_00... [more]
BLAST of Lag0006305 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 77..128
e-value: 9.7E-5
score: 22.9
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 38..145
e-value: 2.6E-5
score: 26.2
NoneNo IPR availablePANTHERPTHR37752:SF1OS02G0610700 PROTEINcoord: 7..148
NoneNo IPR availablePANTHERPTHR37752OS02G0610700 PROTEINcoord: 7..148
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 70..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006305.1Lag0006305.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009579 thylakoid
molecular_function GO:0046872 metal ion binding